Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ASF1A 0 genome.wustl.edu 37 6 119228580 119228580 + Frame_Shift_Del DEL T T - TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 6 119228580 119228580 T - DEL ASF1A ENST00000229595 human ensembl 69_37n +1 known frame_shift_del c.416 p.L140fs 1.000 pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like - no_errors ASF1A HGNC ENSG00000111875 76 0 0.00 36 13 26.53 - - - ASXL3 0 genome.wustl.edu 37 18 31325521 31325521 + Silent SNP G G A TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 18 31325521 31325521 G A SNP ASXL3 ENST00000269197 human ensembl 69_37n +1 known silent c.5709 p.S1903 0.003 NULL superfamily_Znf_FYVE_PHD - no_errors ASXL3 HGNC ENSG00000141431 52 0 0.00 31 6 16.22 - - - C1QTNF3 0 genome.wustl.edu 37 5 34024111 34024111 + Missense_Mutation SNP C C A TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 5 34024111 34024111 C A SNP C1QTNF3 ENST00000382065 human ensembl 69_37n -1 known missense c.703 p.V235L 1.000 pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q - no_errors C1QTNF3 HGNC ENSG00000082196 53 0 0.00 51 11 17.74 - - - COL4A5 0 genome.wustl.edu 37 X 107823802 107823802 + Missense_Mutation SNP A A G TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a X 107823802 107823802 A G SNP COL4A5 ENST00000328300 human ensembl 69_37n +1 known missense c.820 p.I274V 0.789 NULL pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC - no_errors COL4A5 HGNC ENSG00000188153 96 0 0.00 95 18 15.93 - - - DYRK4 0 genome.wustl.edu 37 12 4708239 4708239 + Missense_Mutation SNP C C A TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 12 4708239 4708239 C A SNP DYRK4 ENST00000010132 human ensembl 69_37n +1 known missense c.606 p.F202L 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors DYRK4 HGNC ENSG00000010219 82 0 0.00 75 10 11.76 - - - NCAPG 0 genome.wustl.edu 37 4 17819064 17819064 + Missense_Mutation SNP A A T TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 4 17819064 17819064 A T SNP NCAPG ENST00000251496 human ensembl 69_37n +1 known missense c.956 p.N319I 0.205 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors NCAPG HGNC ENSG00000109805 66 0 0.00 42 5 10.64 - - - OPLAH 0 genome.wustl.edu 37 8 145106682 145106682 + RNA DEL T T - TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 8 145106682 145106682 T - DEL OPLAH ENST00000426825 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors OPLAH HGNC ENSG00000178814 19 0 0.00 9 2 18.18 - - - PHF12 0 genome.wustl.edu 37 17 27239625 27239625 + Missense_Mutation SNP G G A TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 17 27239625 27239625 G A SNP PHF12 ENST00000332830 human ensembl 69_37n -1 known missense c.1964 p.T655I 1.000 NULL pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger - no_errors PHF12 HGNC ENSG00000109118 46 0 0.00 44 6 12.00 - - - PPP1R17 0 genome.wustl.edu 37 7 31735165 31735165 + Missense_Mutation SNP T T A TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 7 31735165 31735165 T A SNP PPP1R17 ENST00000342032 human ensembl 69_37n +1 known missense c.165 p.N55K 0.005 NULL NULL - no_errors PPP1R17 HGNC ENSG00000106341 70 0 0.00 74 10 11.90 - - - PSG1 0 genome.wustl.edu 37 19 43382212 43382212 + Missense_Mutation SNP A A G TCGA-E9-A1QZ-01A-21D-A167-09 TCGA-E9-A1QZ-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2d47b244-e5e4-4645-91cb-71de1d685a95 7258e638-3291-484b-9c13-ffed4d7e747a 19 43382212 43382212 A G SNP PSG1 ENST00000312439 human ensembl 69_37n -1 known missense c.283 p.Y95H 0.003 pfam_Ig_V-set,smart_Ig_sub pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors PSG1 HGNC ENSG00000231924 124 0 0.00 92 21 18.58 - - -