Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAM21P1 0 genome.wustl.edu 37 14 70714144 70714144 + RNA SNP A A G TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 14 70714144 70714144 A G SNP ADAM21P1 ENST00000530196 human ensembl 69_37n -1 known rna NULL NULL 0.121 - - - no_errors ADAM21P1 HGNC ENSG00000235812 18 0 0.00 15 6 28.57 - - - CNTN1 0 genome.wustl.edu 37 12 41330620 41330620 + Missense_Mutation SNP G G T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 12 41330620 41330620 G T SNP CNTN1 ENST00000347616 human ensembl 69_37n +1 known missense c.1023 p.E341D 0.997 pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors CNTN1 HGNC ENSG00000018236 29 0 0.00 21 3 12.50 - - - FAM182B 0 genome.wustl.edu 37 20 25848629 25848629 + RNA SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 20 25848629 25848629 C T SNP FAM182B ENST00000478164 human ensembl 69_37n -1 known rna NULL NULL 0.002 - - - no_errors FAM182B HGNC ENSG00000175170 31 0 0.00 15 4 21.05 - - - FAM86B2 0 genome.wustl.edu 37 8 12285146 12285146 + Frame_Shift_Del DEL G G - TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 8 12285146 12285146 G - DEL FAM86B2 ENST00000393715 human ensembl 69_37n -1 known frame_shift_del c.228 p.P78fs 0.002 NULL NULL - no_errors FAM86B2 HGNC ENSG00000145002 8 0 0.00 4 3 42.86 - - - FBXO42 0 genome.wustl.edu 37 1 16641842 16641842 + Silent SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 1 16641842 16641842 C T SNP FBXO42 ENST00000375592 human ensembl 69_37n -1 known silent c.72 p.G24 1.000 NULL pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like - no_errors FBXO42 HGNC ENSG00000037637 25 0 0.00 31 4 11.43 - - - GGH 0 genome.wustl.edu 37 8 63927746 63927746 + RNA SNP T T C TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 8 63927746 63927746 T C SNP GGH ENST00000518466 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors GGH HGNC ENSG00000137563 10 0 0.00 11 11 50.00 - - - GOLGA8G 0 genome.wustl.edu 37 15 28776254 28776254 + Silent SNP T T C TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 15 28776254 28776254 T C SNP GOLGA8G ENST00000416855 human ensembl 69_37n -1 known silent c.105 p.R35 0.041 NULL NULL - no_errors GOLGA8G HGNC ENSG00000183629 12 0 0.00 0 3 100.00 - - - HMGCR 0 genome.wustl.edu 37 5 74650339 74650339 + Missense_Mutation SNP A A T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 5 74650339 74650339 A T SNP HMGCR ENST00000287936 human ensembl 69_37n +1 known missense c.1380 p.K460N 0.993 superfamily_HMG_CoA_Rdtase_sub-bd,tigrfam_HMG_CoA_Rdtase_metazoan pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc - no_errors HMGCR HGNC ENSG00000113161 26 0 0.00 35 4 10.26 - - - HSD17B3 0 genome.wustl.edu 37 9 99012066 99012066 + Missense_Mutation SNP G G T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 9 99012066 99012066 G T SNP HSD17B3 ENST00000375263 human ensembl 69_37n -1 known missense c.456 p.S152R 0.066 pfam_DH_sc/Rdtase_SDR pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR - no_errors HSD17B3 HGNC ENSG00000130948 32 0 0.00 25 4 13.79 - - - INPP4B 0 genome.wustl.edu 37 4 143181718 143181718 + Splice_Site SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 4 143181718 143181718 C T SNP INPP4B ENST00000509777 human ensembl 69_37n -1 known splice_site c.616-1 e8-1 1.000 - - - no_errors INPP4B HGNC ENSG00000109452 36 0 0.00 35 4 10.26 - - - ITIH2 0 genome.wustl.edu 37 10 7745330 7745330 + RNA SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 10 7745330 7745330 C T SNP ITIH2 ENST00000476165 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors ITIH2 HGNC ENSG00000151655 30 0 0.00 27 4 12.90 - - - KRTAP5-5 0 genome.wustl.edu 37 11 1651241 1651241 + Silent SNP A A C TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 11 1651241 1651241 A C SNP KRTAP5-5 ENST00000399676 human ensembl 69_37n +1 known silent c.171 p.G57 0.753 NULL NULL - no_errors KRTAP5-5 HGNC ENSG00000185940 51 0 0.00 42 7 14.29 - - - LARS 0 genome.wustl.edu 37 5 145522520 145522520 + Missense_Mutation SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 5 145522520 145522520 C T SNP LARS ENST00000394434 human ensembl 69_37n -1 known missense c.2005 p.D669N 1.000 pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,tigrfam_Leu-tRNA-synth_Ia_arc/euk - no_errors LARS HGNC ENSG00000133706 21 0 0.00 22 4 15.38 - - - MUC16 0 genome.wustl.edu 37 19 8994489 8994489 + Silent SNP G G A TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 19 8994489 8994489 G A SNP MUC16 ENST00000397910 human ensembl 69_37n -1 known silent c.41403 p.N13801 0.429 pfam_SEA pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC16 HGNC ENSG00000181143 48 0 0.00 53 14 20.90 - - - MUC20 0 genome.wustl.edu 37 3 195452814 195452814 + Missense_Mutation SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 3 195452814 195452814 C T SNP MUC20 ENST00000447234 human ensembl 69_37n +1 known missense c.1340 p.T447M 0.002 NULL NULL - no_errors MUC20 HGNC ENSG00000176945 30 0 0.00 38 8 17.39 - - - PIK3CG 0 genome.wustl.edu 37 7 106523363 106523364 + RNA DEL AA AA - TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 AA AA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 7 106523363 106523364 AA - DEL PIK3CG ENST00000466738 human ensembl 69_37n +1 putative rna NULL NULL 0.000:0.001 - - - no_errors PIK3CG HGNC ENSG00000105851 10 0 0.00 9 2 13.33 - - - RTTN 0 genome.wustl.edu 37 18 67741218 67741218 + Missense_Mutation SNP G G A TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 18 67741218 67741218 G A SNP RTTN ENST00000255674 human ensembl 69_37n -1 known missense c.4577 p.S1526L 1.000 NULL superfamily_ARM-type_fold - no_errors RTTN HGNC ENSG00000176225 37 0 0.00 17 4 19.05 - - - TBC1D3P5 0 genome.wustl.edu 37 17 25748765 25748765 + RNA SNP C C A TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 17 25748765 25748765 C A SNP TBC1D3P5 ENST00000586223 human ensembl 69_37n +1 known rna NULL NULL 0.187 - - - no_errors TBC1D3P5 HGNC ENSG00000266433 27 0 0.00 31 8 20.51 - - - TBL1XR1 0 genome.wustl.edu 37 3 176769296 176769297 + Frame_Shift_Del DEL TA TA - TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 TA TA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 3 176769296 176769297 TA - DEL TBL1XR1 ENST00000430069 human ensembl 69_37n -1 known frame_shift_del c.423_422 p.I141fs 1.000:1.000 NULL pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TBL1XR1 HGNC ENSG00000177565 13 0 0.00 18 9 33.33 - - - TCAM1P 0 genome.wustl.edu 37 17 61938248 61938248 + RNA SNP G G T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 17 61938248 61938248 G T SNP TCAM1P ENST00000478379 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors TCAM1P HGNC ENSG00000240280 19 0 0.00 13 3 18.75 - - - TPTE 0 genome.wustl.edu 37 21 11026767 11026767 + RNA SNP T T C TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 21 11026767 11026767 T C SNP TPTE ENST00000415664 human ensembl 69_37n -1 known rna NULL NULL 0.997 - - - no_errors TPTE HGNC ENSG00000166157 45 0 0.00 53 8 13.11 - - - TPTE2 0 genome.wustl.edu 37 13 20006620 20006620 + Silent SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 13 20006620 20006620 C T SNP TPTE2 ENST00000382977 human ensembl 69_37n -1 known silent c.1215 p.S405 0.023 pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors TPTE2 HGNC ENSG00000132958 43 0 0.00 75 10 11.76 - - - TRIM66 0 genome.wustl.edu 37 11 8662623 8662623 + Silent SNP G G T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 11 8662623 8662623 G T SNP TRIM66 ENST00000299550 human ensembl 69_37n -1 known silent c.864 p.P288 0.338 NULL pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_B-box,smart_Znf_PHD,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Bromodomain - no_errors TRIM66 HGNC ENSG00000166436 33 0 0.00 27 4 12.90 - - - UBC 0 genome.wustl.edu 37 12 125396902 125396902 + Silent SNP T T C TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 12 125396902 125396902 T C SNP UBC ENST00000339647 human ensembl 69_37n -1 known silent c.1416 p.E472 1.000 pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr - no_errors UBC HGNC ENSG00000150991 14 0 0.00 5 4 44.44 - - - WDR19 0 genome.wustl.edu 37 4 39245931 39245931 + Silent SNP C C A TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 4 39245931 39245931 C A SNP WDR19 ENST00000399820 human ensembl 69_37n +1 known silent c.2485 p.R829 0.993 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR19 HGNC ENSG00000157796 22 0 0.00 31 5 13.89 - - - ZNF101 0 genome.wustl.edu 37 19 19790603 19790603 + Missense_Mutation SNP C C T TCGA-E2-A3DX-01A-21D-A20S-09 TCGA-E2-A3DX-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7a89a261-0177-4378-b89a-b1ead9e093bf 1ab484a1-6e7d-485f-938a-6d1d2f74cf40 19 19790603 19790603 C T SNP ZNF101 ENST00000318110 human ensembl 69_37n +1 known missense c.805 p.R269W 0.151 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF101 HGNC ENSG00000181896 22 0 0.00 20 6 23.08 - - -