Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABCD1 0 genome.wustl.edu 37 X 153005554 153005554 + Missense_Mutation SNP A A G TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 X 153005554 153005554 A G SNP ABCD1 ENST00000443684 human ensembl 69_37n +1 known missense c.500 p.K167R 0.886 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region ABCD1 HGNC ENSG00000101986 37 0 0.00 48 11 18.64 - - - AP3M1 0 genome.wustl.edu 37 10 75885944 75885944 + Missense_Mutation SNP G G C TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 10 75885944 75885944 G C SNP AP3M1 ENST00000355264 human ensembl 69_37n -1 known missense c.973 p.P325A 1.000 pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu - no_errors AP3M1 HGNC ENSG00000185009 89 0 0.00 161 36 18.27 - - - ARID3B 0 genome.wustl.edu 37 15 74836605 74836605 + Missense_Mutation SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 15 74836605 74836605 G A SNP ARID3B ENST00000346246 human ensembl 69_37n +1 known missense c.328 p.V110M 0.986 NULL pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID3B HGNC ENSG00000179361 99 0 0.00 184 23 11.11 - - - BAZ2A 0 genome.wustl.edu 37 12 56997461 56997461 + Missense_Mutation SNP C C T TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 12 56997461 56997461 C T SNP BAZ2A ENST00000551812 human ensembl 69_37n -1 known missense c.3068 p.R1023Q 1.000 NULL pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain - no_errors BAZ2A HGNC ENSG00000076108 39 0 0.00 74 27 26.73 - - - COASY 0 genome.wustl.edu 37 17 40715065 40715067 + In_Frame_Del DEL GCT GCT - TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 GCT GCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 17 40715065 40715067 GCT - DEL COASY ENST00000590958 human ensembl 69_37n +1 known in_frame_del c.512_514 p.C173in_frame_del 1.000:0.998:1.000 NULL pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase - no_errors COASY HGNC ENSG00000068120 27 0 0.00 44 13 22.81 - - - DCAF6 0 genome.wustl.edu 37 1 168032951 168032951 + Missense_Mutation SNP C C T TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 1 168032951 168032951 C T SNP DCAF6 ENST00000367840 human ensembl 69_37n +1 known missense c.2393 p.P798L 1.000 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom - no_errors DCAF6 HGNC ENSG00000143164 57 0 0.00 128 23 15.23 - - - DNM1P46 0 genome.wustl.edu 37 15 100332799 100332799 + RNA SNP A A C TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 15 100332799 100332799 A C SNP DNM1P46 ENST00000341853 human ensembl 69_37n -1 known rna NULL NULL 0.961 - - - no_errors DNM1P46 HGNC ENSG00000182397 33 0 0.00 71 17 19.32 - - - GCN1L1 0 genome.wustl.edu 37 12 120593147 120593147 + Missense_Mutation SNP C C A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 12 120593147 120593147 C A SNP GCN1L1 ENST00000300648 human ensembl 69_37n -1 known missense c.3528 p.R1176S 0.998 superfamily_ARM-type_fold pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2 - no_errors GCN1L1 HGNC ENSG00000089154 43 0 0.00 94 35 27.13 - - - HERC2P4 0 genome.wustl.edu 37 16 32191941 32191941 + RNA SNP C C T TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 16 32191941 32191941 C T SNP HERC2P4 ENST00000566591 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors HERC2P4 HGNC ENSG00000230267 18 0 0.00 23 8 25.81 - - - IGSF9B 0 genome.wustl.edu 37 11 133790479 133790479 + Silent SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 11 133790479 133790479 G A SNP IGSF9B ENST00000321016 human ensembl 69_37n -1 known silent c.3141 p.F1047 0.819 NULL pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors IGSF9B HGNC ENSG00000080854 14 0 0.00 13 4 23.53 - - - IL27RA 0 genome.wustl.edu 37 19 14150592 14150592 + Missense_Mutation SNP C C G TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 19 14150592 14150592 C G SNP IL27RA ENST00000263379 human ensembl 69_37n +1 known missense c.404 p.P135R 0.005 superfamily_Fibronectin_type3,smart_Fibronectin_type3 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors IL27RA HGNC ENSG00000104998 15 0 0.00 37 20 35.09 - - - KCNK16 0 genome.wustl.edu 37 6 39283076 39283076 + Missense_Mutation SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 6 39283076 39283076 G A SNP KCNK16 ENST00000425054 human ensembl 69_37n -1 known missense c.793 p.P265S 0.000 NULL pfam_Ion_trans_2,prints_2pore_dom_K_chnl - no_errors KCNK16 HGNC ENSG00000095981 60 0 0.00 86 31 26.50 - - - NEDD4L 0 genome.wustl.edu 37 18 56018246 56018246 + Silent SNP C C T TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 18 56018246 56018246 C T SNP NEDD4L ENST00000400345 human ensembl 69_37n +1 known silent c.1677 p.H559 0.889 pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom - no_errors NEDD4L HGNC ENSG00000049759 57 0 0.00 114 30 20.83 - - - PER3 0 genome.wustl.edu 37 1 7890055 7890055 + Silent SNP T T A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 1 7890055 7890055 T A SNP PER3 ENST00000361923 human ensembl 69_37n +1 known silent c.3021 p.A1007 0.063 pfam_Period_circadian-like_C pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS - no_errors PER3 HGNC ENSG00000049246 17 0 0.00 58 17 22.37 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 40 0 0.00 73 13 15.12 - - - PKD1L1 0 genome.wustl.edu 37 7 47969011 47969011 + Nonsense_Mutation SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 7 47969011 47969011 G A SNP PKD1L1 ENST00000289672 human ensembl 69_37n -1 known nonsense c.850 p.R284* 0.000 NULL pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like - no_errors PKD1L1 HGNC ENSG00000158683 59 0 0.00 118 28 19.18 - - - RP1L1 0 genome.wustl.edu 37 8 10469694 10469696 + In_Frame_Del DEL CTG CTG - TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 CTG CTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 8 10469694 10469696 CTG - DEL RP1L1 ENST00000382483 human ensembl 69_37n -1 known in_frame_del c.1914_1912 p.Q638in_frame_del 0.000:0.000:0.000 NULL pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom - no_errors RP1L1 HGNC ENSG00000183638 14 0 0.00 10 5 31.25 - - - SERPINB8 0 genome.wustl.edu 37 18 61650836 61650836 + Missense_Mutation SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 18 61650836 61650836 G A SNP SERPINB8 ENST00000353706 human ensembl 69_37n +1 known missense c.448 p.A150T 0.000 pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPINB8 HGNC ENSG00000166401 35 0 0.00 74 25 25.25 - - - TMEM26 0 genome.wustl.edu 37 10 63191081 63191081 + Missense_Mutation SNP T T C TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 10 63191081 63191081 T C SNP TMEM26 ENST00000399298 human ensembl 69_37n -1 known missense c.280 p.I94V 0.034 pfam_Transmembrane_26 pfam_Transmembrane_26 - no_errors TMEM26 HGNC ENSG00000196932 89 0 0.00 193 59 23.41 - - - TPPP2 0 genome.wustl.edu 37 14 21500170 21500170 + Missense_Mutation SNP G G A TCGA-E2-A1L6-01A-11D-A13L-09 TCGA-E2-A1L6-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f610239f-5610-4d7b-bc31-ae3ccb9c425d 3388c646-ffac-43bf-b8a6-c5f216b17af0 14 21500170 21500170 G A SNP TPPP2 ENST00000321760 human ensembl 69_37n +1 known missense c.447 p.M149I 0.001 pfam_P25-alpha pfam_P25-alpha - no_errors TPPP2 HGNC ENSG00000179636 43 0 0.00 106 26 19.55 - - -