Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AR 0 genome.wustl.edu 37 X 66765081 66765081 + Silent SNP C C T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 X 66765081 66765081 C T SNP AR ENST00000374690 human ensembl 69_37n +1 known silent c.93 p.R31 1.000 pfam_Andrgn_rcpt,prints_Andrgn_rcpt pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt - no_errors AR HGNC ENSG00000169083 31 0 0.00 27 9 25.00 - - - ATM 0 genome.wustl.edu 37 11 108121488 108121488 + Silent SNP G G T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 11 108121488 108121488 G T SNP ATM ENST00000278616 human ensembl 69_37n +1 known silent c.1296 p.L432 0.015 superfamily_ARM-type_fold pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors ATM HGNC ENSG00000149311 29 0 0.00 24 11 31.43 - - - CDH1 0 genome.wustl.edu 37 16 68772218 68772218 + Nonsense_Mutation SNP C C T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 16 68772218 68772218 C T SNP CDH1 ENST00000261769 human ensembl 69_37n +1 known nonsense c.67 p.Q23* 0.982 superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 29 0 0.00 7 10 58.82 - - - FAT2 0 genome.wustl.edu 37 5 150924228 150924228 + Nonsense_Mutation SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 5 150924228 150924228 G A SNP FAT2 ENST00000261800 human ensembl 69_37n -1 known nonsense c.6460 p.Q2154* 0.020 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT2 HGNC ENSG00000086570 22 0 0.00 22 11 33.33 - - - FKBP8 0 genome.wustl.edu 37 19 18650372 18650372 + Missense_Mutation SNP C C A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 19 18650372 18650372 C A SNP FKBP8 ENST00000453489 human ensembl 69_37n -1 known missense c.538 p.D180Y 1.000 pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom pfam_PPIase_FKBP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom - no_errors FKBP8 HGNC ENSG00000105701 13 0 0.00 14 8 36.36 - - - ITGB3BP 0 genome.wustl.edu 37 1 63920077 63920077 + Missense_Mutation SNP C C G TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 1 63920077 63920077 C G SNP ITGB3BP ENST00000371092 human ensembl 69_37n -1 known missense c.518 p.R173T 0.995 pfam_NRIF3_coact_rcpt pfam_NRIF3_coact_rcpt - no_errors ITGB3BP HGNC ENSG00000142856 140 1 0.71 115 35 23.33 - - - KCNMA1 0 genome.wustl.edu 37 10 78943191 78943191 + Nonsense_Mutation SNP T T A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 10 78943191 78943191 T A SNP KCNMA1 ENST00000406533 human ensembl 69_37n -1 known nonsense c.796 p.R266* 1.000 pfam_Ion_trans_dom pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl - no_errors KCNMA1 HGNC ENSG00000156113 29 0 0.00 28 11 28.21 - - - MCL1 0 genome.wustl.edu 37 1 150551359 150551359 + Silent SNP A A T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 1 150551359 150551359 A T SNP MCL1 ENST00000369026 human ensembl 69_37n -1 known silent c.648 p.V216 0.600 pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Apop_reg_Mc1,prints_Bcl2_BH - no_errors MCL1 HGNC ENSG00000143384 24 0 0.00 26 9 25.71 - - - MLL5 0 genome.wustl.edu 37 7 104719345 104719345 + Missense_Mutation SNP G G T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 7 104719345 104719345 G T SNP MLL5 ENST00000257745 human ensembl 69_37n +1 known missense c.1183 p.V395F 1.000 pfam_SET_dom,smart_SET_dom,pfscan_SET_dom pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger - no_errors MLL5 HGNC ENSG00000005483 156 0 0.00 160 75 31.91 - - - NPHS1 0 genome.wustl.edu 37 19 36321761 36321761 + Silent SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 19 36321761 36321761 G A SNP NPHS1 ENST00000378910 human ensembl 69_37n -1 known silent c.3579 p.Y1193 0.121 NULL pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors NPHS1 HGNC ENSG00000161270 46 0 0.00 50 12 19.35 - - - NXF5 0 genome.wustl.edu 37 X 101096721 101096721 + Silent SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 X 101096721 101096721 G A SNP NXF5 ENST00000263032 human ensembl 69_37n -1 known silent c.165 p.F55 0.987 pfam_Tap_RNA-bd pfam_Tap_RNA-bd - no_errors NXF5 HGNC ENSG00000126952 170 0 0.00 143 48 25.00 - - - OR2T34 0 genome.wustl.edu 37 1 248737167 248737167 + Missense_Mutation SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 1 248737167 248737167 G A SNP OR2T34 ENST00000328782 human ensembl 69_37n -1 known missense c.892 p.R298C 0.000 pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR2T34 HGNC ENSG00000183310 26 0 0.00 37 10 21.28 - - - PIK3CA 0 genome.wustl.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 3 178936082 178936082 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1624 p.E542K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 80 0 0.00 55 33 37.50 - - - PPM1B 0 genome.wustl.edu 37 2 44429052 44429052 + Silent SNP C C T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 2 44429052 44429052 C T SNP PPM1B ENST00000282412 human ensembl 69_37n +1 known silent c.714 p.I238 0.985 pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like - no_errors PPM1B HGNC ENSG00000138032 75 0 0.00 83 28 25.23 - - - RNF215 0 genome.wustl.edu 37 22 30775744 30775744 + Missense_Mutation SNP A A T TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 22 30775744 30775744 A T SNP RNF215 ENST00000382363 human ensembl 69_37n -1 known missense c.1067 p.L356Q 1.000 pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF215 HGNC ENSG00000099999 48 0 0.00 26 21 44.68 - - - SAT2 0 genome.wustl.edu 37 17 7531048 7531048 + RNA SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 17 7531048 7531048 G A SNP SAT2 ENST00000380466 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors SAT2 HGNC ENSG00000141504 11 0 0.00 5 7 58.33 - - - STK31 0 genome.wustl.edu 37 7 23792363 23792363 + Missense_Mutation SNP A A G TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 7 23792363 23792363 A G SNP STK31 ENST00000355870 human ensembl 69_37n +1 known missense c.1045 p.T349A 0.999 NULL pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom - no_errors STK31 HGNC ENSG00000196335 80 0 0.00 75 32 29.91 - - - ZFHX3 0 genome.wustl.edu 37 16 72832413 72832413 + Nonsense_Mutation SNP G G A TCGA-D8-A1XO-01A-11D-A14K-09 TCGA-D8-A1XO-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5ff68a2-da74-4608-941e-dbac40153077 19f00cd8-b25b-4b38-a55d-b6360c693945 16 72832413 72832413 G A SNP ZFHX3 ENST00000268489 human ensembl 69_37n -1 known nonsense c.4168 p.Q1390* 1.000 pfscan_Znf_C2H2 pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors ZFHX3 HGNC ENSG00000140836 100 0 0.00 40 51 56.04 - - -