Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANO1 0 genome.wustl.edu 37 11 70007819 70007819 + Silent SNP C C T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 11 70007819 70007819 C T SNP ANO1 ENST00000355303 human ensembl 69_37n +1 known silent c.1872 p.Y624 1.000 pfam_Anoctamin pfam_Anoctamin - no_errors ANO1 HGNC ENSG00000131620 94 0 0.00 103 50 32.26 - - - APOBEC3A 0 genome.wustl.edu 37 22 39357391 39357391 + Splice_Site SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 22 39357391 39357391 G A SNP APOBEC3A ENST00000249116 human ensembl 69_37n +1 known splice_site c.175-1 e3-1 0.000 - - - no_errors APOBEC3A HGNC ENSG00000128383 18 0 0.00 6 11 64.71 - - - CACNA1G 0 genome.wustl.edu 37 17 48703503 48703503 + Silent SNP C C G TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 17 48703503 48703503 C G SNP CACNA1G ENST00000359106 human ensembl 69_37n +1 known silent c.6525 p.T2175 0.958 NULL pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1 - no_errors CACNA1G HGNC ENSG00000006283 28 0 0.00 18 16 47.06 - - - CACNA1G 0 genome.wustl.edu 37 17 48703604 48703604 + Missense_Mutation SNP C C T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 17 48703604 48703604 C T SNP CACNA1G ENST00000359106 human ensembl 69_37n +1 known missense c.6626 p.P2209L 0.014 NULL pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1 - no_errors CACNA1G HGNC ENSG00000006283 22 0 0.00 26 17 39.53 - - - CROCCP2 0 genome.wustl.edu 37 1 16950687 16950687 + RNA SNP G G T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 1 16950687 16950687 G T SNP CROCCP2 ENST00000421700 human ensembl 69_37n -1 known rna NULL NULL 0.003 - - - no_errors CROCCP2 HGNC ENSG00000215908 11 0 0.00 18 6 25.00 - - - DNA2 0 genome.wustl.edu 37 10 70231706 70231706 + Silent SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 10 70231706 70231706 G A SNP DNA2 ENST00000399180 human ensembl 69_37n -1 known silent c.174 p.R58 0.012 NULL pfam_DNA_replication_fac_Dna2 - no_errors DNA2 HGNC ENSG00000138346 33 0 0.00 16 9 36.00 - - - EP400 0 genome.wustl.edu 37 12 132562209 132562209 + Silent SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 12 132562209 132562209 G A SNP EP400 ENST00000333577 human ensembl 69_37n +1 known silent c.9471 p.P3157 0.737 NULL pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors EP400 HGNC ENSG00000183495 18 0 0.00 15 8 34.78 - - - FAM78B 0 genome.wustl.edu 37 1 166039779 166039779 + Missense_Mutation SNP C C A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 1 166039779 166039779 C A SNP FAM78B ENST00000338353 human ensembl 69_37n -1 known missense c.485 p.R162I 0.997 NULL NULL - no_errors FAM78B HGNC ENSG00000188859 72 0 0.00 121 27 18.24 - - - GATA3 0 genome.wustl.edu 37 10 8111513 8111514 + Frame_Shift_Ins INS - - G TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 10 8111513 8111514 - G INS GATA3 ENST00000379328 human ensembl 69_37n +1 known frame_shift_ins c.1002_1003 p.D335fs 0.859:1.000 pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA - no_errors GATA3 HGNC ENSG00000107485 62 0 0.00 96 34 26.15 - - - GRM6 0 genome.wustl.edu 37 5 178418554 178418555 + Frame_Shift_Ins INS - - C TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 5 178418554 178418555 - C INS GRM6 ENST00000231188 human ensembl 69_37n -1 known frame_shift_ins c.728_727 p.V243fs 1.000:0.986 pfam_ANF_lig-bd_rcpt,prints_GPCR_3_mtglu_rcpt pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C - no_errors GRM6 HGNC ENSG00000113262 44 0 0.00 43 13 23.21 - - - NACA2 0 genome.wustl.edu 37 17 59668404 59668404 + Silent SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 17 59668404 59668404 G A SNP NACA2 ENST00000521764 human ensembl 69_37n -1 known silent c.138 p.T46 0.976 pirsf_Nas_poly-pep-assoc_cplx_asu pfam_Nas_poly-pep-assoc_cplx,superfamily_UBA-like,pirsf_Nas_poly-pep-assoc_cplx_asu,pfscan_Nas_poly-pep-assoc_cplx - no_errors NACA2 HGNC ENSG00000253506 96 0 0.00 480 58 10.78 - - - NPAS4 0 genome.wustl.edu 37 11 66191476 66191476 + Missense_Mutation SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 11 66191476 66191476 G A SNP NPAS4 ENST00000311034 human ensembl 69_37n +1 known missense c.1115 p.S372N 1.000 NULL pfam_PAS_fold_3,smart_PAS,pfscan_PAS - no_errors NPAS4 HGNC ENSG00000174576 24 0 0.00 36 20 35.71 - - - OR8H1 0 genome.wustl.edu 37 11 56058034 56058034 + Missense_Mutation SNP C C T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 11 56058034 56058034 C T SNP OR8H1 ENST00000313022 human ensembl 69_37n -1 known missense c.505 p.D169N 0.000 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR8H1 HGNC ENSG00000181693 49 0 0.00 59 30 33.71 - - - PCDHB6 0 genome.wustl.edu 37 5 140530373 140530373 + Missense_Mutation SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 5 140530373 140530373 G A SNP PCDHB6 ENST00000231136 human ensembl 69_37n +1 known missense c.535 p.V179I 0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB6 HGNC ENSG00000113211 56 0 0.00 42 20 32.26 - - - SCN3A 0 genome.wustl.edu 37 2 165952146 165952146 + Missense_Mutation SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 2 165952146 165952146 G A SNP SCN3A ENST00000283254 human ensembl 69_37n -1 known missense c.4306 p.P1436S 1.000 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS - no_errors SCN3A HGNC ENSG00000153253 65 0 0.00 60 35 36.84 - - - SIRPB1 0 genome.wustl.edu 37 20 1551639 1551639 + Missense_Mutation SNP G G A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 20 1551639 1551639 G A SNP SIRPB1 ENST00000381605 human ensembl 69_37n -1 known missense c.896 p.S299L 0.000 pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like - no_errors SIRPB1 HGNC ENSG00000101307 139 0 0.00 165 96 36.64 - - - SLC24A3 0 genome.wustl.edu 37 20 19662508 19662508 + Silent SNP C C T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 20 19662508 19662508 C T SNP SLC24A3 ENST00000328041 human ensembl 69_37n +1 known silent c.774 p.N258 0.619 tigrfam_K-dep_Na/Ca-exchanger-like pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like - no_errors SLC24A3 HGNC ENSG00000185052 49 0 0.00 42 25 37.31 - - - SNUPN 0 genome.wustl.edu 37 15 75901960 75901960 + Nonsense_Mutation SNP G G T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 15 75901960 75901960 G T SNP SNUPN ENST00000371091 human ensembl 69_37n -1 known nonsense c.567 p.Y189* 1.000 pirsf_Snurportin-1 pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB - no_errors SNUPN HGNC ENSG00000169371 62 0 0.00 72 19 20.88 - - - TTC7B 0 genome.wustl.edu 37 14 91077095 91077095 + Missense_Mutation SNP G G T TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 14 91077095 91077095 G T SNP TTC7B ENST00000357056 human ensembl 69_37n -1 known missense c.1957 p.P653T 1.000 NULL pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC7B HGNC ENSG00000165914 92 0 0.00 117 50 29.94 - - - UBN2 0 genome.wustl.edu 37 7 138968233 138968233 + Missense_Mutation SNP C C A TCGA-C8-A273-01A-11D-A16D-09 TCGA-C8-A273-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c5e6f325-5fd0-4cff-8eaf-6e23e016f605 938d7d67-f5e1-4fce-aacd-9224ed1a882f 7 138968233 138968233 C A SNP UBN2 ENST00000473989 human ensembl 69_37n +1 known missense c.2582 p.S861Y 1.000 NULL NULL - no_errors UBN2 HGNC ENSG00000157741 41 0 0.00 176 32 15.38 - - -