Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ARHGEF9 0 genome.wustl.edu 37 X 62875545 62875545 + Missense_Mutation SNP C C T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 X 62875545 62875545 C T SNP ARHGEF9 ENST00000253401 human ensembl 69_37n -1 known missense c.1129 p.E377K 1.000 pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain - no_errors ARHGEF9 HGNC ENSG00000131089 331 0 0.00 373 46 10.98 - - - DDX21 0 genome.wustl.edu 37 10 70737326 70737326 + Missense_Mutation SNP A A G TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 10 70737326 70737326 A G SNP DDX21 ENST00000354185 human ensembl 69_37n +1 known missense c.1784 p.K595R 1.000 NULL pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors DDX21 HGNC ENSG00000165732 134 0 0.00 122 43 26.06 - - - DPM1 0 genome.wustl.edu 37 20 49575041 49575041 + Missense_Mutation SNP C C T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 20 49575041 49575041 C T SNP DPM1 ENST00000371582 human ensembl 69_37n -1 known missense c.20 p.S7N 0.000 NULL pfam_Glyco_trans_2 - no_errors DPM1 HGNC ENSG00000000419 67 0 0.00 65 27 29.35 - - - GOLGA6L2 0 genome.wustl.edu 37 15 23685826 23685828 + In_Frame_Del DEL TCT TCT - TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 TCT TCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 15 23685826 23685828 TCT - DEL GOLGA6L2 ENST00000567107 human ensembl 69_37n -1 putative in_frame_del c.1796_1794 p.E598in_frame_del 0.000:0.000:0.000 NULL NULL - no_errors GOLGA6L2 HGNC ENSG00000174450 26 0 0.00 34 6 15.00 - - - GPR55 0 genome.wustl.edu 37 2 231775625 231775625 + Missense_Mutation SNP A A G TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 2 231775625 231775625 A G SNP GPR55 ENST00000392039 human ensembl 69_37n -1 known missense c.53 p.L18P 0.528 NULL pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn - no_errors GPR55 HGNC ENSG00000135898 89 0 0.00 63 22 25.88 - - - KIAA0430 0 genome.wustl.edu 37 16 15702158 15702158 + Missense_Mutation SNP T T C TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 16 15702158 15702158 T C SNP KIAA0430 ENST00000396368 human ensembl 69_37n -1 known missense c.4172 p.H1391R 1.000 NULL pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom - no_errors KIAA0430 HGNC ENSG00000166783 62 0 0.00 52 22 29.73 - - - LAMC3 0 genome.wustl.edu 37 9 133917083 133917083 + Missense_Mutation SNP G G A TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 9 133917083 133917083 G A SNP LAMC3 ENST00000361069 human ensembl 69_37n +1 known missense c.1343 p.C448Y 1.000 pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N - no_errors LAMC3 HGNC ENSG00000050555 63 0 0.00 69 20 22.47 - - - NUP35 0 genome.wustl.edu 37 2 184023015 184023015 + Missense_Mutation SNP C C A TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 2 184023015 184023015 C A SNP NUP35 ENST00000295119 human ensembl 69_37n +1 known missense c.614 p.S205Y 1.000 pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53 pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53 - no_errors NUP35 HGNC ENSG00000163002 86 0 0.00 124 26 17.33 - - - ODZ1 0 genome.wustl.edu 37 X 123514548 123514548 + Silent SNP C C G TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 X 123514548 123514548 C G SNP ODZ1 ENST00000422452 human ensembl 69_37n -1 known silent c.8037 p.G2679 0.001 NULL pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD - no_errors ODZ1 HGNC ENSG00000009694 264 0 0.00 305 112 26.86 - - - PDZD4 0 genome.wustl.edu 37 X 153073934 153073934 + Missense_Mutation SNP G G C TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 X 153073934 153073934 G C SNP PDZD4 ENST00000164640 human ensembl 69_37n -1 known missense c.177 p.D59E 0.981 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors PDZD4 HGNC ENSG00000067840 29 0 0.00 28 7 20.00 - - - PRKX 0 genome.wustl.edu 37 X 3544506 3544506 + Missense_Mutation SNP G G T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 X 3544506 3544506 G T SNP PRKX ENST00000262848 human ensembl 69_37n -1 known missense c.769 p.L257I 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors PRKX HGNC ENSG00000183943 422 0 0.00 395 158 28.57 - - - RALBP1 0 genome.wustl.edu 37 18 9524597 9524597 + Silent SNP C C T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 18 9524597 9524597 C T SNP RALBP1 ENST00000019317 human ensembl 69_37n +1 known silent c.1059 p.S353 1.000 superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom - no_errors RALBP1 HGNC ENSG00000017797 114 0 0.00 83 48 36.64 - - - RAPGEF4-AS1 0 genome.wustl.edu 37 2 173591198 173591198 + RNA SNP A A G TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 2 173591198 173591198 A G SNP RAPGEF4-AS1 ENST00000435328 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors RAPGEF4-AS1 HGNC ENSG00000228016 9 0 0.00 1 7 87.50 - - - SF3B1 0 genome.wustl.edu 37 2 198266834 198266834 + Missense_Mutation SNP T T C TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 2 198266834 198266834 T C SNP SF3B1 ENST00000335508 human ensembl 69_37n -1 known missense c.2098 p.K700E 1.000 superfamily_ARM-type_fold pfam_SF3b_su1,superfamily_ARM-type_fold - no_errors SF3B1 HGNC ENSG00000115524 91 0 0.00 88 27 23.48 - - - SIK3 0 genome.wustl.edu 37 11 116766967 116766967 + Splice_Site SNP A A G TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 11 116766967 116766967 A G SNP SIK3 ENST00000375300 human ensembl 69_37n -1 known splice_site c.865+2 e6+2 1.000 - - - no_errors SIK3 HGNC ENSG00000160584 98 0 0 69 32 31.37 - - - TARSL2 0 genome.wustl.edu 37 15 102263346 102263346 + Missense_Mutation SNP C C T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 15 102263346 102263346 C T SNP TARSL2 ENST00000335968 human ensembl 69_37n -1 known missense c.319 p.D107N 0.618 NULL pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa - no_errors TARSL2 HGNC ENSG00000185418 330 1 0.30 329 116 26.07 - - - TNFRSF9 0 genome.wustl.edu 37 1 7980932 7980932 + Missense_Mutation SNP C C T TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 1 7980932 7980932 C T SNP TNFRSF9 ENST00000377507 human ensembl 69_37n -1 known missense c.731 p.R244Q 0.858 prints_TNFR_9 pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9,pfscan_TNFR/NGFR_Cys_rich_reg - no_errors TNFRSF9 HGNC ENSG00000049249 160 0 0.00 185 60 24.49 - - - XDH 0 genome.wustl.edu 37 2 31588379 31588379 + Missense_Mutation SNP G G A TCGA-BH-A201-01A-11D-A14K-09 TCGA-BH-A201-10A-01D-A14K-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx df6e619f-67a5-49f3-9768-4826aa2c9d1b ec9e0f5b-4363-422c-bdbd-c6eb48504a93 2 31588379 31588379 G A SNP XDH ENST00000379416 human ensembl 69_37n -1 known missense c.2488 p.R830C 1.000 pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu - no_errors XDH HGNC ENSG00000158125 115 0 0.00 96 31 24.41 - - -