Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AKR1C4 0 genome.wustl.edu 37 10 5254676 5254676 + Missense_Mutation SNP G G A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 10 5254676 5254676 G A SNP AKR1C4 ENST00000263126 human ensembl 69_37n +1 known missense c.668 p.R223Q 0.155 pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr - no_errors AKR1C4 HGNC ENSG00000198610 101 0 0.00 57 9 13.64 - - - GPR98 0 genome.wustl.edu 37 5 89986809 89986809 + Missense_Mutation SNP A A T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 5 89986809 89986809 A T SNP GPR98 ENST00000405460 human ensembl 69_37n +1 known missense c.6902 p.Q2301L 1.000 smart_Calx_beta pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like - no_errors GPR98 HGNC ENSG00000164199 122 0 0.00 45 29 39.19 - - - KHDC3L 0 genome.wustl.edu 37 6 74072569 74072569 + Silent SNP G G T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 6 74072569 74072569 G T SNP KHDC3L ENST00000370367 human ensembl 69_37n +1 known silent c.117 p.L39 0.003 NULL NULL - no_errors KHDC3L HGNC ENSG00000203908 76 0 0.00 33 4 10.81 - - - LILRA4 0 genome.wustl.edu 37 19 54849483 54849483 + Missense_Mutation SNP C C T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 19 54849483 54849483 C T SNP LILRA4 ENST00000291759 human ensembl 69_37n -1 known missense c.379 p.A127T 0.035 pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like - no_errors LILRA4 HGNC ENSG00000239961 42 0 0.00 13 10 43.48 - - - MAMLD1 0 genome.wustl.edu 37 X 149613879 149613879 + Splice_Site SNP G G A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 X 149613879 149613879 G A SNP MAMLD1 ENST00000432680 human ensembl 69_37n +1 known splice_site c.96+1 e1+1 1.000 - - - no_errors MAMLD1 HGNC ENSG00000013619 98 0 0.00 32 25 43.86 - - - NBEA 0 genome.wustl.edu 37 13 35785239 35785239 + Silent SNP G G C TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 13 35785239 35785239 G C SNP NBEA ENST00000310336 human ensembl 69_37n +1 known silent c.5571 p.V1857 1.000 NULL pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom - no_errors NBEA HGNC ENSG00000172915 147 0 0.00 70 44 38.60 - - - PPP2R2A 0 genome.wustl.edu 37 8 26227655 26227655 + Missense_Mutation SNP T T A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 8 26227655 26227655 T A SNP PPP2R2A ENST00000380737 human ensembl 69_37n +1 known missense c.1070 p.V357D 1.000 superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55 - no_errors PPP2R2A HGNC ENSG00000221914 62 0 0.00 11 24 68.57 - - - PRDM16 0 genome.wustl.edu 37 1 3328646 3328646 + Missense_Mutation SNP G G A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 1 3328646 3328646 G A SNP PRDM16 ENST00000270722 human ensembl 69_37n +1 known missense c.1885 p.V629M 1.000 NULL pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors PRDM16 HGNC ENSG00000142611 13 0 0.00 3 5 62.50 - - - RAB40A 0 genome.wustl.edu 37 X 102755501 102755501 + Missense_Mutation SNP G G A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 X 102755501 102755501 G A SNP RAB40A ENST00000304236 human ensembl 69_37n -1 known missense c.184 p.R62W 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom - no_errors RAB40A HGNC ENSG00000172476 101 0 0.00 54 8 12.90 - - - RASAL1 0 genome.wustl.edu 37 12 113553739 113553739 + Missense_Mutation SNP C C A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 12 113553739 113553739 C A SNP RASAL1 ENST00000546530 human ensembl 69_37n -1 known missense c.849 p.E283D 1.000 superfamily_Rho_GTPase_activation_prot,smart_RasGAP pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP - no_errors RASAL1 HGNC ENSG00000111344 27 0 0.00 10 8 44.44 - - - RNA5-8SP6 0 genome.wustl.edu 37 Y 10037843 10037843 + RNA SNP C C T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 Y 10037843 10037843 C T SNP RNA5-8SP6 ENST00000515896 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors RNA5-8SP6 HGNC ENSG00000251705 29 0 0.00 22 4 15.38 - - - RPLP0 0 genome.wustl.edu 37 12 120635133 120635133 + Missense_Mutation SNP C C T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 12 120635133 120635133 C T SNP RPLP0 ENST00000228306 human ensembl 69_37n -1 known missense c.784 p.A262T 1.000 pfam_Ribosomal_60S pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S - no_errors RPLP0 HGNC ENSG00000089157 53 0 0.00 29 15 34.09 - - - SPDYE1 0 genome.wustl.edu 37 7 44043475 44043475 + Silent SNP C C T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 7 44043475 44043475 C T SNP SPDYE1 ENST00000258704 human ensembl 69_37n +1 known silent c.511 p.L171 0.412 pfam_Cell_cycle_regulatory_Spy1 pfam_Cell_cycle_regulatory_Spy1 - no_errors SPDYE1 HGNC ENSG00000136206 46 0 0.00 33 5 13.16 - - - TMEM214 0 genome.wustl.edu 37 2 27262671 27262671 + Missense_Mutation SNP G G A TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 2 27262671 27262671 G A SNP TMEM214 ENST00000238788 human ensembl 69_37n +1 known missense c.1588 p.A530T 0.041 pfam_DUF2359_TMEM214 pfam_DUF2359_TMEM214 - no_errors TMEM214 HGNC ENSG00000119777 106 0 0.00 44 15 25.42 - - - TNFSF4 0 genome.wustl.edu 37 1 173155705 173155705 + Missense_Mutation SNP C C T TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 1 173155705 173155705 C T SNP TNFSF4 ENST00000281834 human ensembl 69_37n -1 known missense c.502 p.G168R 0.930 pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF - no_errors TNFSF4 HGNC ENSG00000117586 48 0 0.00 23 7 23.33 - - - TRIP12 0 genome.wustl.edu 37 2 230663600 230663601 + Frame_Shift_Del DEL GA GA - TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 2 230663600 230663601 GA - DEL TRIP12 ENST00000283943 human ensembl 69_37n -1 known frame_shift_del c.3248_3247 p.S1083fs 1.000:1.000 NULL pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom - no_errors TRIP12 HGNC ENSG00000153827 127 0 0.00 72 19 20.65 - - - WDR47 0 genome.wustl.edu 37 1 109553818 109553818 + Missense_Mutation SNP A A C TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 1 109553818 109553818 A C SNP WDR47 ENST00000400794 human ensembl 69_37n -1 known missense c.871 p.L291V 0.995 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR47 HGNC ENSG00000085433 78 0 0.00 62 9 12.68 - - - WDR54 0 genome.wustl.edu 37 2 74652076 74652076 + Silent SNP A A G TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 2 74652076 74652076 A G SNP WDR54 ENST00000348227 human ensembl 69_37n +1 known silent c.609 p.T203 0.420 superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR54 HGNC ENSG00000005448 70 0 0.00 50 17 25.00 - - - YIPF6 0 genome.wustl.edu 37 X 67741223 67741223 + Silent SNP A A G TCGA-BH-A1FG-01A-11D-A13L-09 TCGA-BH-A1FG-11B-12D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 311f2f1a-75c8-4fee-b31d-0815d71a3173 e0c48952-a56b-4c97-89b7-7bc9d7acde38 X 67741223 67741223 A G SNP YIPF6 ENST00000462683 human ensembl 69_37n +1 known silent c.318 p.Q106 0.981 pfam_Yip1 pfam_Yip1 - no_errors YIPF6 HGNC ENSG00000181704 170 0 0.00 89 67 42.95 - - -