Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABCB1 0 genome.wustl.edu 37 7 87148753 87148753 + Missense_Mutation SNP C C G TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 7 87148753 87148753 C G SNP ABCB1 ENST00000265724 human ensembl 69_37n -1 known missense c.2816 p.G939A 1.000 pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1 pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1 - no_errors ABCB1 HGNC ENSG00000085563 236 0 0.00 218 29 11.74 - - - ACOT2 0 genome.wustl.edu 37 14 74042189 74042189 + Missense_Mutation SNP A A G TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 14 74042189 74042189 A G SNP ACOT2 ENST00000238651 human ensembl 69_37n +1 known missense c.1424 p.H475R 0.000 pirsf_Acyl-CoA_thioEstase_long-chain pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain - no_errors ACOT2 HGNC ENSG00000119673 9 0 0.00 16 9 36.00 - - - ANKRD24 0 genome.wustl.edu 37 19 4217300 4217300 + Missense_Mutation SNP G G A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 19 4217300 4217300 G A SNP ANKRD24 ENST00000262970 human ensembl 69_37n +1 known missense c.2413 p.A805T 0.232 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD24 HGNC ENSG00000089847 37 0 0.00 34 5 12.82 - - - ASXL2 0 genome.wustl.edu 37 2 25967231 25967231 + Missense_Mutation SNP C C T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 2 25967231 25967231 C T SNP ASXL2 ENST00000435504 human ensembl 69_37n -1 known missense c.1975 p.D659N 1.000 NULL superfamily_Znf_FYVE_PHD - no_errors ASXL2 HGNC ENSG00000143970 243 0 0.00 174 28 13.79 - - - BCAR3 0 genome.wustl.edu 37 1 94048116 94048116 + Missense_Mutation SNP C C G TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 1 94048116 94048116 C G SNP BCAR3 ENST00000260502 human ensembl 69_37n -1 known missense c.1428 p.L476F 1.000 NULL pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25 - no_errors BCAR3 HGNC ENSG00000137936 227 0 0.00 192 24 11.11 - - - CR1 0 genome.wustl.edu 37 1 207796386 207796386 + Missense_Mutation SNP C C A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 1 207796386 207796386 C A SNP CR1 ENST00000367049 human ensembl 69_37n +1 known missense c.7325 p.S2442Y 0.000 NULL pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CR1 HGNC ENSG00000203710 709 0 0.00 589 163 21.68 - - - CREBRF 0 genome.wustl.edu 37 5 172535710 172535710 + Missense_Mutation SNP G G C TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 5 172535710 172535710 G C SNP CREBRF ENST00000540014 human ensembl 69_37n +1 known missense c.1306 p.E436Q 1.000 NULL NULL - no_errors CREBRF HGNC ENSG00000164463 188 0 0.00 194 30 13.33 - - - ELTD1 0 genome.wustl.edu 37 1 79357327 79357327 + Nonsense_Mutation SNP C C T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 1 79357327 79357327 C T SNP ELTD1 ENST00000370742 human ensembl 69_37n -1 known nonsense c.1892 p.W631* 1.000 pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like - no_errors ELTD1 HGNC ENSG00000162618 109 0 0.00 96 32 25.00 - - - GALNT2 0 genome.wustl.edu 37 1 230384985 230384985 + Silent SNP G G A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 1 230384985 230384985 G A SNP GALNT2 ENST00000366672 human ensembl 69_37n +1 known silent c.873 p.R291 0.785 pfam_Glyco_trans_2 pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT2 HGNC ENSG00000143641 198 0 0.00 194 33 14.54 - - - GPC5 0 genome.wustl.edu 37 13 92345944 92345944 + Missense_Mutation SNP G G A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 13 92345944 92345944 G A SNP GPC5 ENST00000377067 human ensembl 69_37n +1 known missense c.829 p.V277I 0.943 pfam_Glypican pfam_Glypican - no_errors GPC5 HGNC ENSG00000179399 114 0 0.00 93 16 14.68 - - - ITGB8 0 genome.wustl.edu 37 7 20441487 20441487 + Missense_Mutation SNP A A T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 7 20441487 20441487 A T SNP ITGB8 ENST00000222573 human ensembl 69_37n +1 known missense c.1425 p.R475S 0.012 pirsf_Integrin_bsu pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu - no_errors ITGB8 HGNC ENSG00000105855 463 0 0.00 401 64 13.76 - - - NT5E 0 genome.wustl.edu 37 6 86201888 86201888 + Silent SNP T T C TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 6 86201888 86201888 T C SNP NT5E ENST00000257770 human ensembl 69_37n +1 known silent c.1554 p.H518 0.971 superfamily_5'-Nucleotdase_C pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase - no_errors NT5E HGNC ENSG00000135318 164 0 0.00 167 23 12.11 - - - OPN1LW 0 genome.wustl.edu 37 X 153416306 153416306 + Silent SNP C C T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b X 153416306 153416306 C T SNP OPN1LW ENST00000369951 human ensembl 69_37n +1 known silent c.291 p.V97 0.003 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin - no_errors OPN1LW HGNC ENSG00000102076 188 0 0.00 166 19 10.22 - - - PRR14L 0 genome.wustl.edu 37 22 32112726 32112726 + Missense_Mutation SNP C C T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 22 32112726 32112726 C T SNP PRR14L ENST00000397493 human ensembl 69_37n -1 known missense c.1099 p.G367S 0.000 NULL NULL - no_errors PRR14L HGNC ENSG00000183530 377 0 0.00 385 47 10.85 - - - SGK1 0 genome.wustl.edu 37 6 134492799 134492799 + Silent SNP G G C TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 6 134492799 134492799 G C SNP SGK1 ENST00000367858 human ensembl 69_37n -1 known silent c.1143 p.V381 0.992 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom - no_errors SGK1 HGNC ENSG00000118515 159 1 0.62 895 173 16.15 - - - SGK1 0 genome.wustl.edu 37 6 134493422 134493422 + Nonsense_Mutation SNP G G T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 6 134493422 134493422 G T SNP SGK1 ENST00000367858 human ensembl 69_37n -1 known nonsense c.980 p.S327* 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom - no_errors SGK1 HGNC ENSG00000118515 415 3 0.72 2301 408 15.04 - - - SYMPK 0 genome.wustl.edu 37 19 46319770 46319770 + Silent SNP G G A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 19 46319770 46319770 G A SNP SYMPK ENST00000245934 human ensembl 69_37n -1 known silent c.3324 p.A1108 1.000 NULL pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold - no_errors SYMPK HGNC ENSG00000125755 92 0 0.00 76 22 22.45 - - - TBC1D3 0 genome.wustl.edu 37 17 36340138 36340138 + Silent SNP A A G TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 17 36340138 36340138 A G SNP TBC1D3 ENST00000354664 human ensembl 69_37n -1 known silent c.889 p.L297 0.353 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D3 HGNC ENSG00000197681 26 0 0.00 32 7 17.50 - - - TP53 0 genome.wustl.edu 37 17 7578491 7578491 + Frame_Shift_Del DEL C C - TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 17 7578491 7578491 C - DEL TP53 ENST00000269305 human ensembl 69_37n -1 known frame_shift_del c.439 p.V147fs 1.000 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 128 0 0.00 112 36 23.84 - - - TSHZ2 0 genome.wustl.edu 37 20 51870526 51870526 + Missense_Mutation SNP C C A TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 20 51870526 51870526 C A SNP TSHZ2 ENST00000371497 human ensembl 69_37n +1 known missense c.529 p.L177M 1.000 NULL superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2 - no_errors TSHZ2 HGNC ENSG00000182463 106 0 0.00 118 29 19.73 - - - ZDBF2 0 genome.wustl.edu 37 2 207170990 207170990 + Nonsense_Mutation SNP G G T TCGA-BH-A1F0-01A-11D-A135-09 TCGA-BH-A1F0-11B-23D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3903b485-366d-4318-b17d-a0194f032bd8 64613d52-ad24-4f06-8668-3e058043911b 2 207170990 207170990 G T SNP ZDBF2 ENST00000374423 human ensembl 69_37n +1 known nonsense c.1738 p.E580* 0.900 NULL pfam_Znf_DBF,smart_Znf_DBF - no_errors ZDBF2 HGNC ENSG00000204186 340 0 0.00 359 72 16.71 - - -