Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ASB10 0 genome.wustl.edu 37 7 150884267 150884268 + Frame_Shift_Del DEL AG AG - TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 7 150884267 150884268 AG - DEL ASB10 ENST00000422024 human ensembl 69_37n -1 known frame_shift_del c.86_85 p.L29fs 0.003:0.000 NULL pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C - no_errors ASB10 HGNC ENSG00000146926 41 0 0.00 34 5 12.82 - - - C17orf49 0 genome.wustl.edu 37 17 6920583 6920583 + Silent SNP G G A TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 17 6920583 6920583 G A SNP C17orf49 ENST00000546495 human ensembl 69_37n +1 known silent c.522 p.L174 1.000 NULL superfamily_Homeodomain-like - no_errors C17orf49 Clone_based_vega_gene ENSG00000258315 385 0 0.00 169 65 27.66 - - - CDS1 0 genome.wustl.edu 37 4 85530598 85530598 + Missense_Mutation SNP A A G TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 4 85530598 85530598 A G SNP CDS1 ENST00000295887 human ensembl 69_37n +1 known missense c.262 p.I88V 1.000 pfam_PC_trans,pirsf_PC_Trfase_euk pfam_PC_trans,pirsf_PC_Trfase_euk - no_errors CDS1 HGNC ENSG00000163624 619 0 0.00 347 250 41.88 - - - COTL1 0 genome.wustl.edu 37 16 84600388 84600388 + RNA SNP G G A TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 16 84600388 84600388 G A SNP COTL1 ENST00000567278 human ensembl 69_37n -1 known rna NULL NULL 0.001 - - - no_errors COTL1 HGNC ENSG00000103187 74 0 0.00 64 14 17.95 - - - CRNKL1 0 genome.wustl.edu 37 20 20023120 20023120 + Missense_Mutation SNP C C T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 20 20023120 20023120 C T SNP CRNKL1 ENST00000377340 human ensembl 69_37n -1 known missense c.1496 p.R499H 1.000 NULL pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom - no_errors CRNKL1 HGNC ENSG00000101343 203 0 0.00 188 25 11.68 - - - FDFT1 0 genome.wustl.edu 37 8 11679310 11679310 + Missense_Mutation SNP G G A TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 8 11679310 11679310 G A SNP FDFT1 ENST00000220584 human ensembl 69_37n +1 known missense c.433 p.D145N 1.000 pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth - no_errors FDFT1 HGNC ENSG00000079459 472 0 0.00 254 44 14.72 - - - GPR144 0 genome.wustl.edu 37 9 127230042 127230042 + Missense_Mutation SNP G G T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 9 127230042 127230042 G T SNP GPR144 ENST00000334810 human ensembl 69_37n +1 known missense c.1990 p.V664L 0.962 pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like pfam_GPCR_2_secretin-like,pfam_Pentaxin,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_C-type_lectin_fold,smart_Pentaxin,smart_GPS_dom,prints_Pentaxin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like - no_errors GPR144 HGNC ENSG00000180264 145 0 0.00 73 14 16.09 - - - IGSF3 0 genome.wustl.edu 37 1 117127361 117127361 + Nonsense_Mutation SNP G G T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 1 117127361 117127361 G T SNP IGSF3 ENST00000318837 human ensembl 69_37n -1 known nonsense c.2814 p.C938* 1.000 pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like - no_errors IGSF3 HGNC ENSG00000143061 51 0 0.00 39 14 26.42 - - - IQCH 0 genome.wustl.edu 37 15 67664804 67664804 + Missense_Mutation SNP C C T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 15 67664804 67664804 C T SNP IQCH ENST00000335894 human ensembl 69_37n +1 known missense c.1109 p.S370L 0.000 pfscan_IQ_motif_EF-hand-BS pfscan_IQ_motif_EF-hand-BS - no_errors IQCH HGNC ENSG00000103599 61 0 0.00 44 15 24.19 - - - MAPKAP1 0 genome.wustl.edu 37 9 128347966 128347966 + Missense_Mutation SNP T T C TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 9 128347966 128347966 T C SNP MAPKAP1 ENST00000265960 human ensembl 69_37n -1 known missense c.539 p.Y180C 1.000 pfam_SIN1 pfam_SIN1 - no_errors MAPKAP1 HGNC ENSG00000119487 124 0 0.00 63 11 14.67 - - - MAST1 0 genome.wustl.edu 37 19 12976829 12976829 + Nonsense_Mutation SNP C C T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 19 12976829 12976829 C T SNP MAST1 ENST00000251472 human ensembl 69_37n +1 known nonsense c.1942 p.R648* 0.595 superfamily_Kinase-like_dom pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom - no_errors MAST1 HGNC ENSG00000105613 122 0 0.00 81 13 13.83 - - - MLL3 0 genome.wustl.edu 37 7 151859912 151859912 + Missense_Mutation SNP C C T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 7 151859912 151859912 C T SNP MLL3 ENST00000355193 human ensembl 69_37n -1 known missense c.10750 p.G3584R 0.963 NULL pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING - no_errors MLL3 HGNC ENSG00000055609 226 0 0.00 163 49 23.11 - - - NASP 0 genome.wustl.edu 37 1 46073222 46073222 + Frame_Shift_Del DEL A A - TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 1 46073222 46073222 A - DEL NASP ENST00000402363 human ensembl 69_37n +1 known frame_shift_del c.645 p.G217fs 0.076 NULL pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors NASP HGNC ENSG00000132780 77 0 0.00 61 34 35.79 - - - PLA2G4E 0 genome.wustl.edu 37 15 42292345 42292345 + Missense_Mutation SNP G G T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 15 42292345 42292345 G T SNP PLA2G4E ENST00000413860 human ensembl 69_37n -1 known missense c.722 p.S241Y 0.978 NULL pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom - no_errors PLA2G4E HGNC ENSG00000188089 202 0 0.00 119 25 17.36 - - - PRAMEF7 0 genome.wustl.edu 37 1 12980075 12980075 + Missense_Mutation SNP G G T TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 1 12980075 12980075 G T SNP PRAMEF7 ENST00000330881 human ensembl 69_37n +1 known missense c.1267 p.A423S 0.000 NULL NULL - no_errors PRAMEF7 HGNC ENSG00000204510 135 0 0.00 80 68 45.95 - - - TM9SF2 0 genome.wustl.edu 37 13 100190011 100190011 + Missense_Mutation SNP G G C TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 13 100190011 100190011 G C SNP TM9SF2 ENST00000376387 human ensembl 69_37n +1 known missense c.610 p.D204H 1.000 pfam_EMP70 pfam_EMP70 - no_errors TM9SF2 HGNC ENSG00000125304 170 0 0.00 169 31 15.50 - - - VDAC2 0 genome.wustl.edu 37 10 76979101 76979101 + Missense_Mutation SNP T T A TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 10 76979101 76979101 T A SNP VDAC2 ENST00000313132 human ensembl 69_37n +1 known missense c.388 p.S130T 1.000 pfam_Porin_Euk pfam_Porin_Euk,prints_Porin_Euk - no_errors VDAC2 HGNC ENSG00000165637 212 0 0.00 120 40 25.00 - - - ZC3H13 0 genome.wustl.edu 37 13 46616352 46616352 + Missense_Mutation SNP C C A TCGA-BH-A1ES-01A-11D-A135-09 TCGA-BH-A1ES-11A-33D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7ecda44b-e942-4077-9d18-2a844ec53c9d b281f983-29fc-4389-bea2-cabf4c90b3df 13 46616352 46616352 C A SNP ZC3H13 ENST00000242848 human ensembl 69_37n -1 known missense c.286 p.V96L 1.000 NULL pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZC3H13 HGNC ENSG00000123200 309 0 0.00 341 123 26.51 - - -