Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAMTS10 0 genome.wustl.edu 37 19 8651269 8651269 + Missense_Mutation SNP T T G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 19 8651269 8651269 T G SNP ADAMTS10 ENST00000270328 human ensembl 69_37n -1 known missense c.2489 p.H830P 1.000 superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS10 HGNC ENSG00000142303 22 0 0.00 36 9 20.00 - - - CALN1 0 genome.wustl.edu 37 7 71743768 71743768 + Missense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 7 71743768 71743768 G A SNP CALN1 ENST00000433253 human ensembl 69_37n -1 known missense c.151 p.R51C 0.609 NULL NULL - no_errors CALN1 HGNC ENSG00000183166 42 0 0.00 79 12 13.19 - - - CALN1 0 genome.wustl.edu 37 7 71743768 71743768 + Missense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 7 71743768 71743768 G A SNP CALN1 ENST00000433253 human ensembl 69_37n -1 known missense c.151 p.R51C 0.609 NULL NULL - no_errors CALN1 HGNC ENSG00000183166 89 0 0.00 79 12 13.19 - - - CDK20 0 genome.wustl.edu 37 9 90582257 90582257 + RNA SNP T T G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 9 90582257 90582257 T G SNP CDK20 ENST00000459720 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors CDK20 HGNC ENSG00000156345 53 0 0.00 36 6 13.64 - - - COL17A1 0 genome.wustl.edu 37 10 105796340 105796340 + Missense_Mutation SNP G G T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 10 105796340 105796340 G T SNP COL17A1 ENST00000353479 human ensembl 69_37n -1 known missense c.3328 p.P1110T 0.214 NULL pfam_Collagen - no_errors COL17A1 HGNC ENSG00000065618 38 0 0.00 37 6 13.95 - - - CTSF 0 genome.wustl.edu 37 11 66335548 66335548 + Silent SNP A A G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 11 66335548 66335548 A G SNP CTSF ENST00000310325 human ensembl 69_37n -1 known silent c.219 p.G73 0.030 NULL pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C - no_errors CTSF HGNC ENSG00000174080 8 0 0.00 18 9 27.27 - - - HRNR 0 genome.wustl.edu 37 1 152191571 152191571 + Missense_Mutation SNP C C G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 1 152191571 152191571 C G SNP HRNR ENST00000368801 human ensembl 69_37n -1 known missense c.2534 p.G845A 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2 - no_errors HRNR HGNC ENSG00000197915 298 0 0.00 194 30 13.39 - - - HRNR 0 genome.wustl.edu 37 1 152191571 152191571 + Missense_Mutation SNP C C G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 1 152191571 152191571 C G SNP HRNR ENST00000368801 human ensembl 69_37n -1 known missense c.2534 p.G845A 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2 - no_errors HRNR HGNC ENSG00000197915 179 0 0.00 194 30 13.39 - - - IGSF10 0 genome.wustl.edu 37 3 151161292 151161292 + Missense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 3 151161292 151161292 G A SNP IGSF10 ENST00000282466 human ensembl 69_37n -1 known missense c.5443 p.R1815C 0.999 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like - no_errors IGSF10 HGNC ENSG00000152580 87 0 0.00 73 11 13.10 - - - IGSF10 0 genome.wustl.edu 37 3 151161292 151161292 + Missense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 3 151161292 151161292 G A SNP IGSF10 ENST00000282466 human ensembl 69_37n -1 known missense c.5443 p.R1815C 0.999 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like - no_errors IGSF10 HGNC ENSG00000152580 103 0 0.00 73 11 13.10 - - - PCDHGA12 0 genome.wustl.edu 37 5 140810665 140810665 + Missense_Mutation SNP A A C TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 5 140810665 140810665 A C SNP PCDHGA12 ENST00000252085 human ensembl 69_37n +1 known missense c.339 p.K113N 0.910 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA12 HGNC ENSG00000253159 77 0 0.00 56 14 20.00 - - - PCDHGA12 0 genome.wustl.edu 37 5 140810665 140810665 + Missense_Mutation SNP A A C TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 5 140810665 140810665 A C SNP PCDHGA12 ENST00000252085 human ensembl 69_37n +1 known missense c.339 p.K113N 0.910 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA12 HGNC ENSG00000253159 48 0 0.00 56 14 20.00 - - - ROR1 0 genome.wustl.edu 37 1 64624790 64624790 + Missense_Mutation SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 1 64624790 64624790 C T SNP ROR1 ENST00000371079 human ensembl 69_37n +1 known missense c.1301 p.S434L 1.000 pirsf_Tyr_kinase_rcpt_ROR pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors ROR1 HGNC ENSG00000185483 226 0 0.00 209 25 10.68 - - - ROR1 0 genome.wustl.edu 37 1 64624790 64624790 + Missense_Mutation SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 1 64624790 64624790 C T SNP ROR1 ENST00000371079 human ensembl 69_37n +1 known missense c.1301 p.S434L 1.000 pirsf_Tyr_kinase_rcpt_ROR pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors ROR1 HGNC ENSG00000185483 174 0 0.00 209 25 10.68 - - - SACS 0 genome.wustl.edu 37 13 23910597 23910597 + Missense_Mutation SNP C C G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 13 23910597 23910597 C G SNP SACS ENST00000382292 human ensembl 69_37n -1 known missense c.7418 p.W2473S 1.000 NULL pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup - no_errors SACS HGNC ENSG00000151835 221 0 0.00 116 18 13.33 - - - SACS 0 genome.wustl.edu 37 13 23910597 23910597 + Missense_Mutation SNP C C G TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 13 23910597 23910597 C G SNP SACS ENST00000382292 human ensembl 69_37n -1 known missense c.7418 p.W2473S 1.000 NULL pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup - no_errors SACS HGNC ENSG00000151835 133 0 0.00 116 18 13.33 - - - TCF4 0 genome.wustl.edu 37 18 52928746 52928746 + Nonsense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 18 52928746 52928746 G A SNP TCF4 ENST00000570146 human ensembl 69_37n -1 putative nonsense c.205 p.Q69* 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region TCF4 HGNC ENSG00000196628 47 0 0.00 57 9 13.64 - - - TCF4 0 genome.wustl.edu 37 18 52928746 52928746 + Nonsense_Mutation SNP G G A TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 18 52928746 52928746 G A SNP TCF4 ENST00000570146 human ensembl 69_37n -1 putative nonsense c.205 p.Q69* 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region TCF4 HGNC ENSG00000196628 47 0 0.00 57 9 13.64 - - - TP53 0 genome.wustl.edu 37 17 7578290 7578290 + Splice_Site SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 17 7578290 7578290 C T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known splice_site c.560-1 e5-1 1.000 - - - no_errors TP53 HGNC ENSG00000141510 136 0 0.00 95 44 31.65 - - - TP53 0 genome.wustl.edu 37 17 7578290 7578290 + Splice_Site SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 17 7578290 7578290 C T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known splice_site c.560-1 e5-1 1.000 - - - no_errors TP53 HGNC ENSG00000141510 152 0 0.00 95 44 31.65 - - - TPST1 0 genome.wustl.edu 37 7 65705728 65705728 + Nonsense_Mutation SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 7 65705728 65705728 C T SNP TPST1 ENST00000304842 human ensembl 69_37n +1 known nonsense c.316 p.R106* 1.000 pfam_Sulfotransferase_dom pfam_Sulfotransferase_dom - no_errors TPST1 HGNC ENSG00000169902 93 0 0.00 120 22 15.49 - - - TPST1 0 genome.wustl.edu 37 7 65705728 65705728 + Nonsense_Mutation SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 7 65705728 65705728 C T SNP TPST1 ENST00000304842 human ensembl 69_37n +1 known nonsense c.316 p.R106* 1.000 pfam_Sulfotransferase_dom pfam_Sulfotransferase_dom - no_errors TPST1 HGNC ENSG00000169902 106 0 0.00 120 22 15.49 - - - VPS53 0 genome.wustl.edu 37 17 505056 505056 + Silent SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 17 505056 505056 C T SNP VPS53 ENST00000437048 human ensembl 69_37n -1 known silent c.1197 p.T399 0.005 pfam_Vps53_N pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54 - no_errors VPS53 HGNC ENSG00000141252 350 0 0.00 315 43 12.01 - - - VPS53 0 genome.wustl.edu 37 17 505056 505056 + Silent SNP C C T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 17 505056 505056 C T SNP VPS53 ENST00000437048 human ensembl 69_37n -1 known silent c.1197 p.T399 0.005 pfam_Vps53_N pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54 - no_errors VPS53 HGNC ENSG00000141252 356 0 0.00 315 43 12.01 - - - WNT7A 0 genome.wustl.edu 37 3 13860453 13860453 + Nonsense_Mutation SNP G G T TCGA-BH-A0B7-01A-12D-A10Y-09 TCGA-BH-A0B7-11A-34D-A10Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2627cdc1-dc02-4816-8628-cab8c8e79139 5fcc5f15-40eb-496a-9224-b945b471c43e 3 13860453 13860453 G T SNP WNT7A ENST00000285018 human ensembl 69_37n -1 known nonsense c.1038 p.Y346* 1.000 pfam_Wnt,smart_Wnt pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7 - no_errors WNT7A HGNC ENSG00000154764 53 0 0.00 36 4 10.00 - - -