Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ACE 0 genome.wustl.edu 37 17 61570872 61570872 + Silent SNP C C T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 17 61570872 61570872 C T SNP ACE ENST00000290866 human ensembl 69_37n +1 known silent c.2988 p.F996 1.000 pfam_Peptidase_M2,prints_Peptidase_M2 pfam_Peptidase_M2,prints_Peptidase_M2 - no_errors ACE HGNC ENSG00000159640 118 0 0.00 79 32 28.83 - - - ARCN1 0 genome.wustl.edu 37 11 118468587 118468587 + Silent SNP A A G TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 11 118468587 118468587 A G SNP ARCN1 ENST00000264028 human ensembl 69_37n +1 known silent c.1407 p.Q469 1.000 pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C - no_errors ARCN1 HGNC ENSG00000095139 277 0 0.00 94 100 51.55 - - - ARNT 0 genome.wustl.edu 37 1 150807078 150807078 + Nonsense_Mutation SNP C C A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 1 150807078 150807078 C A SNP ARNT ENST00000358595 human ensembl 69_37n -1 known nonsense c.739 p.E247* 1.000 pfam_PAS_fold pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS - no_errors ARNT HGNC ENSG00000143437 322 0 0.00 248 32 11.43 - - - CCNG2 0 genome.wustl.edu 37 4 78082828 78082828 + Silent SNP C C G TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 4 78082828 78082828 C G SNP CCNG2 ENST00000316355 human ensembl 69_37n +1 known silent c.633 p.L211 1.000 NULL pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like - no_errors CCNG2 HGNC ENSG00000138764 280 1 0.36 153 47 23.38 - - - CNN2 0 genome.wustl.edu 37 19 1032430 1032430 + Missense_Mutation SNP C C G TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 19 1032430 1032430 C G SNP CNN2 ENST00000263097 human ensembl 69_37n +1 known missense c.225 p.I75M 1.000 pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_Calponin pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin - no_errors CNN2 HGNC ENSG00000064666 138 0 0.00 97 46 32.17 - - - CNTD2 0 genome.wustl.edu 37 19 40729202 40729202 + Missense_Mutation SNP T T A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 19 40729202 40729202 T A SNP CNTD2 ENST00000430325 human ensembl 69_37n -1 known missense c.681 p.L227F 0.000 superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E - no_errors CNTD2 HGNC ENSG00000105219 10 0 0.00 9 8 47.06 - - - FAM212B 0 genome.wustl.edu 37 1 112270149 112270149 + Missense_Mutation SNP C C A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 1 112270149 112270149 C A SNP FAM212B ENST00000357260 human ensembl 69_37n -1 known missense c.335 p.C112F 0.029 NULL NULL - no_errors FAM212B HGNC ENSG00000197852 51 0 0.00 42 9 17.65 - - - FRMPD4 0 genome.wustl.edu 37 X 12736089 12736089 + Missense_Mutation SNP A A T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 X 12736089 12736089 A T SNP FRMPD4 ENST00000380682 human ensembl 69_37n +1 known missense c.3144 p.K1048N 0.998 NULL pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP - no_errors FRMPD4 HGNC ENSG00000169933 159 0 0.00 106 37 25.87 - - - HDAC11 0 genome.wustl.edu 37 3 13545616 13545616 + Missense_Mutation SNP G G T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 3 13545616 13545616 G T SNP HDAC11 ENST00000295757 human ensembl 69_37n +1 known missense c.672 p.E224D 1.000 pfam_His_deacetylse_dom pfam_His_deacetylse_dom,prints_His_deacetylse - no_errors HDAC11 HGNC ENSG00000163517 249 0 0.00 164 74 31.09 - - - IFT122 0 genome.wustl.edu 37 3 129207207 129207207 + Silent SNP G G A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 3 129207207 129207207 G A SNP IFT122 ENST00000296266 human ensembl 69_37n +1 known silent c.2112 p.A704 0.517 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT122 HGNC ENSG00000163913 160 0 0.00 140 31 18.13 - - - ITGB4 0 genome.wustl.edu 37 17 73745040 73745040 + Missense_Mutation SNP G G A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 17 73745040 73745040 G A SNP ITGB4 ENST00000200181 human ensembl 69_37n +1 known missense c.3230 p.R1077H 1.000 pirsf_Integrin_bsu-4,pfam_Calx_beta,smart_Calx_beta pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu - no_errors ITGB4 HGNC ENSG00000132470 44 0 0.00 55 22 28.21 - - - KCNMA1 0 genome.wustl.edu 37 10 79397263 79397264 + In_Frame_Ins INS - - GAG TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 10 79397263 79397264 - GAG INS KCNMA1 ENST00000406533 human ensembl 69_37n -1 known in_frame_ins c.138_137 p.50in_frame_insS 0.506:0.437 NULL pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl - no_errors KCNMA1 HGNC ENSG00000156113 16 0 0.00 34 10 22.73 - - - MAP2 0 genome.wustl.edu 37 2 210557446 210557446 + Missense_Mutation SNP G G T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 2 210557446 210557446 G T SNP MAP2 ENST00000360351 human ensembl 69_37n +1 known missense c.552 p.K184N 0.000 NULL pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt - no_errors MAP2 HGNC ENSG00000078018 89 0 0.00 47 26 35.14 - - - MICAL3 0 genome.wustl.edu 37 22 18300541 18300541 + Missense_Mutation SNP G G A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 22 18300541 18300541 G A SNP MICAL3 ENST00000441493 human ensembl 69_37n -1 known missense c.4886 p.A1629V 0.949 NULL pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like - no_errors MICAL3 HGNC ENSG00000243156 11 0 0.00 2 9 81.82 - - - PCDH9 0 genome.wustl.edu 37 13 67802338 67802338 + Frame_Shift_Del DEL A A - TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 13 67802338 67802338 A - DEL PCDH9 ENST00000377865 human ensembl 69_37n -1 known frame_shift_del c.235 p.S79fs 1.000 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH9 HGNC ENSG00000184226 140 0 0.00 82 17 17.17 - - - PCDHA4 0 genome.wustl.edu 37 5 140188734 140188734 + Silent SNP C C T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 5 140188734 140188734 C T SNP PCDHA4 ENST00000530339 human ensembl 69_37n +1 known silent c.1962 p.H654 0.983 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA4 HGNC ENSG00000204967 37 0 0.00 25 21 43.75 - - - RFX4 0 genome.wustl.edu 37 12 107141268 107141268 + Missense_Mutation SNP G G T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 12 107141268 107141268 G T SNP RFX4 ENST00000357881 human ensembl 69_37n +1 known missense c.1714 p.G572W 1.000 NULL pfam_DNA-bd_RFX - no_errors RFX4 HGNC ENSG00000111783 73 0 0.00 65 32 32.99 - - - TIMELESS 0 genome.wustl.edu 37 12 56817648 56817648 + Silent SNP G G A TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 12 56817648 56817648 G A SNP TIMELESS ENST00000553532 human ensembl 69_37n -1 known silent c.1899 p.G633 0.986 NULL pfam_TIMELESS_C,pfam_Timeless - no_errors TIMELESS HGNC ENSG00000111602 308 0 0.00 182 88 32.47 - - - TSC1 0 genome.wustl.edu 37 9 135798857 135798857 + Missense_Mutation SNP A A T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 9 135798857 135798857 A T SNP TSC1 ENST00000298552 human ensembl 69_37n -1 known missense c.386 p.L129H 1.000 pfam_Hamartin,superfamily_ARM-type_fold pfam_Hamartin,superfamily_ARM-type_fold - no_errors TSC1 HGNC ENSG00000165699 154 0 0.00 52 51 49.04 - - - ZNF207 0 genome.wustl.edu 37 17 30678929 30678929 + Nonsense_Mutation SNP C C T TCGA-BH-A0AU-01A-11D-A12Q-09 TCGA-BH-A0AU-11A-11D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d06209b8-8aba-44d8-b94a-990861c2324a 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 17 30678929 30678929 C T SNP ZNF207 ENST00000394670 human ensembl 69_37n +1 known nonsense c.166 p.Q56* 1.000 smart_Znf_C2H2-like smart_Znf_C2H2-like - no_errors ZNF207 HGNC ENSG00000010244 254 0 0.00 161 63 28.12 - - -