Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All C10orf12 0 genome.wustl.edu 37 10 98742433 98742433 + Missense_Mutation SNP A A T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 10 98742433 98742433 A T SNP C10orf12 ENST00000286067 human ensembl 69_37n +1 known missense c.1286 p.Q429L 0.004 NULL NULL - no_errors C10orf12 HGNC ENSG00000155640 61 0 0.00 53 16 22.86 - - - CACNA1C-AS1 0 genome.wustl.edu 37 12 2786435 2786435 + RNA SNP G G T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 12 2786435 2786435 G T SNP CACNA1C-AS1 ENST00000501371 human ensembl 69_37n -1 known rna NULL NULL 0.001 - - - no_errors CACNA1C-AS1 HGNC ENSG00000246627 12 0 0.00 14 6 30.00 - - - CYLC2 0 genome.wustl.edu 37 9 105767619 105767619 + Missense_Mutation SNP G G T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 9 105767619 105767619 G T SNP CYLC2 ENST00000374798 human ensembl 69_37n +1 putative missense c.706 p.A236S 0.001 NULL NULL - no_errors CYLC2 HGNC ENSG00000155833 175 1 0.57 116 42 26.58 - - - DCHS1 0 genome.wustl.edu 37 11 6645151 6645151 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 11 6645151 6645151 C T SNP DCHS1 ENST00000299441 human ensembl 69_37n -1 known missense c.7756 p.V2586M 0.996 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors DCHS1 HGNC ENSG00000166341 30 0 0.00 68 9 11.69 - - - DDX54 0 genome.wustl.edu 37 12 113599787 113599787 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 12 113599787 113599787 C T SNP DDX54 ENST00000546898 human ensembl 69_37n -1 putative missense c.418 p.A140T 1.000 pfam_DBP10CT pfam_DBP10CT - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region DDX54 HGNC ENSG00000123064 145 1 0.68 157 24 13.26 - - - DUSP13 0 genome.wustl.edu 37 10 76863684 76863684 + Missense_Mutation SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 10 76863684 76863684 G A SNP DUSP13 ENST00000491677 human ensembl 69_37n -1 known missense c.259 p.P87S 0.002 NULL pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA - no_errors DUSP13 HGNC ENSG00000079393 42 0 0.00 44 7 13.73 - - - GRB10 0 genome.wustl.edu 37 7 50663154 50663154 + Nonsense_Mutation SNP T T A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 7 50663154 50663154 T A SNP GRB10 ENST00000398812 human ensembl 69_37n -1 known nonsense c.1618 p.K540* 1.000 pfam_SH2,smart_SH2,pfscan_SH2 pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2 - no_errors GRB10 HGNC ENSG00000106070 237 1 0.42 141 73 33.95 - - - GTF2IRD2 0 genome.wustl.edu 37 7 74211389 74211389 + Missense_Mutation SNP T T G TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 7 74211389 74211389 T G SNP GTF2IRD2 ENST00000405086 human ensembl 69_37n -1 known missense c.2462 p.N821T 0.998 superfamily_RNaseH-like_dom pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I - no_errors GTF2IRD2 HGNC ENSG00000196275 149 0 0.00 148 77 34.22 - - - HERC2 0 genome.wustl.edu 37 15 28357017 28357017 + Silent SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 15 28357017 28357017 G A SNP HERC2 ENST00000261609 human ensembl 69_37n -1 known silent c.14397 p.I4799 1.000 smart_HECT pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens - no_errors HERC2 HGNC ENSG00000128731 144 0 0.00 116 49 29.70 - - - KIAA1024 0 genome.wustl.edu 37 15 79760670 79760670 + Missense_Mutation SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 15 79760670 79760670 G A SNP KIAA1024 ENST00000305428 human ensembl 69_37n +1 known missense c.2695 p.A899T 1.000 pfam_UPF0258 pfam_UPF0258 - no_errors KIAA1024 HGNC ENSG00000169330 93 0 0.00 107 46 30.07 - - - KRT9 0 genome.wustl.edu 37 17 39726220 39726220 + Missense_Mutation SNP T T C TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 17 39726220 39726220 T C SNP KRT9 ENST00000246662 human ensembl 69_37n -1 known missense c.773 p.N258S 0.913 pfam_F,prints_Keratin_I pfam_F,prints_Keratin_I - no_errors KRT9 HGNC ENSG00000171403 84 0 0.00 96 20 17.24 - - - LCT 0 genome.wustl.edu 37 2 136579662 136579662 + Missense_Mutation SNP T T A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 2 136579662 136579662 T A SNP LCT ENST00000264162 human ensembl 69_37n -1 known missense c.914 p.N305I 0.774 NULL pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 - no_errors LCT HGNC ENSG00000115850 299 0 0.00 275 32 10.39 - - - MAGEC3 0 genome.wustl.edu 37 X 140983081 140983081 + Silent SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 X 140983081 140983081 G A SNP MAGEC3 ENST00000298296 human ensembl 69_37n +1 known silent c.936 p.A312 0.000 NULL pfam_MAGE,pfscan_MAGE - no_errors MAGEC3 HGNC ENSG00000165509 97 0 0.00 164 22 11.83 - - - MTM1 0 genome.wustl.edu 37 X 149814175 149814175 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 X 149814175 149814175 C T SNP MTM1 ENST00000370396 human ensembl 69_37n +1 known missense c.698 p.P233L 0.997 pfam_Myotub-related pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase - no_errors MTM1 HGNC ENSG00000171100 265 0 0.00 247 35 12.41 - - - OR1Q1 0 genome.wustl.edu 37 9 125377831 125377831 + Missense_Mutation SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 9 125377831 125377831 G A SNP OR1Q1 ENST00000297913 human ensembl 69_37n +1 known missense c.815 p.R272H 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR1Q1 HGNC ENSG00000165202 62 0 0.00 64 12 15.79 - - - PFKM 0 genome.wustl.edu 37 12 48535119 48535119 + Missense_Mutation SNP T T C TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 12 48535119 48535119 T C SNP PFKM ENST00000312352 human ensembl 69_37n +1 known missense c.1367 p.V456A 1.000 pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk - no_errors PFKM HGNC ENSG00000152556 125 0 0.00 87 37 29.60 - - - RFX3 0 genome.wustl.edu 37 9 3346744 3346745 + Frame_Shift_Del DEL CA CA - TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 9 3346744 3346745 CA - DEL RFX3 ENST00000382004 human ensembl 69_37n -1 known frame_shift_del c.138_137 p.V46fs 0.999:1.000 pfam_RFX1_trans_act pfam_RFX1_trans_act,pfam_DNA-bd_RFX - no_errors RFX3 HGNC ENSG00000080298 187 0 0.00 208 26 11.02 - - - RMI1 0 genome.wustl.edu 37 9 86617271 86617271 + Missense_Mutation SNP A A G TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 9 86617271 86617271 A G SNP RMI1 ENST00000325875 human ensembl 69_37n +1 known missense c.1370 p.Q457R 0.479 NULL pfam_DUF1767 - no_errors RMI1 HGNC ENSG00000178966 72 0 0.00 39 10 20.41 - - - RUNX1 0 genome.wustl.edu 37 21 36206716 36206716 + Nonsense_Mutation SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 21 36206716 36206716 G A SNP RUNX1 ENST00000300305 human ensembl 69_37n -1 known nonsense c.796 p.Q266* 1.000 pirsf_TF_Runt-rel_RUNX pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt - no_errors RUNX1 HGNC ENSG00000159216 158 0 0.00 263 84 24.21 - - - SDK2 0 genome.wustl.edu 37 17 71364597 71364597 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 17 71364597 71364597 C T SNP SDK2 ENST00000392650 human ensembl 69_37n -1 known missense c.5116 p.A1706T 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors SDK2 HGNC ENSG00000069188 33 0 0.00 61 9 12.86 - - - SLC22A14 0 genome.wustl.edu 37 3 38347837 38347837 + Missense_Mutation SNP G G A TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 3 38347837 38347837 G A SNP SLC22A14 ENST00000273173 human ensembl 69_37n +1 known missense c.320 p.G107D 0.001 NULL pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC22A14 HGNC ENSG00000144671 100 0 0.00 112 21 15.56 - - - TANC2 0 genome.wustl.edu 37 17 61498693 61498693 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 17 61498693 61498693 C T SNP TANC2 ENST00000424789 human ensembl 69_37n +1 known missense c.5350 p.P1784S 1.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt - no_errors TANC2 HGNC ENSG00000170921 162 0 0.00 119 30 20.13 - - - XPO6 0 genome.wustl.edu 37 16 28157469 28157469 + Missense_Mutation SNP T T C TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 16 28157469 28157469 T C SNP XPO6 ENST00000304658 human ensembl 69_37n -1 known missense c.1280 p.Y427C 1.000 superfamily_ARM-type_fold pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N - no_errors XPO6 HGNC ENSG00000169180 336 0 0.00 280 42 13.00 - - - ZDHHC21 0 genome.wustl.edu 37 9 14658806 14658806 + Missense_Mutation SNP C C T TCGA-B6-A0IH-01A-11D-A10Y-09 TCGA-B6-A0IH-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4a4488b9-74d9-4eb1-a7ef-c894c32db942 348ca096-ee86-4a96-9a09-a90b24e84060 9 14658806 14658806 C T SNP ZDHHC21 ENST00000380916 human ensembl 69_37n -1 known missense c.445 p.A149T 1.000 NULL pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase - no_errors ZDHHC21 HGNC ENSG00000175893 128 0 0.00 80 50 38.46 - - -