Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABCB11 0 genome.wustl.edu 37 2 169780189 169780189 + Silent SNP C C T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 2 169780189 169780189 C T SNP ABCB11 ENST00000263817 human ensembl 69_37n -1 known silent c.3909 p.L1303 1.000 pfscan_ABC_transporter-like pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1 - no_errors ABCB11 HGNC ENSG00000073734 115 0 0.00 122 16 11.59 - - - ABI3BP 0 genome.wustl.edu 37 3 100569509 100569509 + Missense_Mutation SNP G G A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 3 100569509 100569509 G A SNP ABI3BP ENST00000284322 human ensembl 69_37n -1 known missense c.1295 p.T432I 1.000 NULL pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors ABI3BP HGNC ENSG00000154175 79 0 0.00 93 11 10.58 - - - COL20A1 0 genome.wustl.edu 37 20 61939943 61939943 + Silent SNP C C G TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 20 61939943 61939943 C G SNP COL20A1 ENST00000326996 human ensembl 69_37n +1 known silent c.825 p.G275 0.006 pfam_VWF_A,smart_VWF_A,pfscan_VWF_A pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A - no_errors COL20A1 HGNC ENSG00000101203 9 0 0.00 10 4 28.57 - - - DAXX 0 genome.wustl.edu 37 6 33288266 33288266 + Missense_Mutation SNP A A C TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 6 33288266 33288266 A C SNP DAXX ENST00000266000 human ensembl 69_37n -1 known missense c.1142 p.M381R 0.967 pfam_Daxx pfam_Daxx - no_errors DAXX HGNC ENSG00000204209 36 0 0.00 36 7 16.28 - - - FGGY 0 genome.wustl.edu 37 1 60073504 60073504 + Silent SNP C C T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 1 60073504 60073504 C T SNP FGGY ENST00000303721 human ensembl 69_37n +1 known silent c.933 p.G311 0.002 pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel - no_errors FGGY HGNC ENSG00000172456 94 0 0.00 61 15 19.74 - - - GSTM3 0 genome.wustl.edu 37 1 110279617 110279617 + RNA SNP G G A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 1 110279617 110279617 G A SNP GSTM3 ENST00000476321 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors GSTM3 HGNC ENSG00000134202 21 0 0.00 22 7 24.14 - - - KLHL4 0 genome.wustl.edu 37 X 86772968 86772968 + Missense_Mutation SNP T T A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b X 86772968 86772968 T A SNP KLHL4 ENST00000373114 human ensembl 69_37n +1 known missense c.72 p.H24Q 1.000 NULL pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like - no_errors KLHL4 HGNC ENSG00000102271 49 0 0.00 32 5 13.51 - - - LCE1C 0 genome.wustl.edu 37 1 152777633 152777633 + Missense_Mutation SNP C C T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 1 152777633 152777633 C T SNP LCE1C ENST00000368768 human ensembl 69_37n -1 known missense c.322 p.G108R 0.032 NULL NULL - no_errors LCE1C HGNC ENSG00000197084 22 0 0.00 26 6 18.75 - - - LIPE 0 genome.wustl.edu 37 19 42911525 42911525 + Silent SNP C C T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 19 42911525 42911525 C T SNP LIPE ENST00000244289 human ensembl 69_37n -1 known silent c.1938 p.L646 0.574 pfam_Steryl_acetyl_hydrolase pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase - no_errors LIPE HGNC ENSG00000079435 24 0 0.00 24 9 27.27 - - - MAGEA12 0 genome.wustl.edu 37 X 151900087 151900087 + Silent SNP G G C TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b X 151900087 151900087 G C SNP MAGEA12 ENST00000357916 human ensembl 69_37n -1 known silent c.714 p.V238 0.000 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEA12 HGNC ENSG00000213401 98 0 0.00 90 13 12.62 - - - NCF4 0 genome.wustl.edu 37 22 37266473 37266473 + Missense_Mutation SNP C C G TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 22 37266473 37266473 C G SNP NCF4 ENST00000397147 human ensembl 69_37n +1 known missense c.359 p.P120R 0.994 pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain - no_errors NCF4 HGNC ENSG00000100365 49 0 0.00 32 11 25.58 - - - NCOA5 0 genome.wustl.edu 37 20 44693794 44693794 + Missense_Mutation SNP C C G TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 20 44693794 44693794 C G SNP NCOA5 ENST00000290231 human ensembl 69_37n -1 known missense c.703 p.E235Q 1.000 superfamily_Anticodon-bd superfamily_Anticodon-bd - no_errors NCOA5 HGNC ENSG00000124160 61 0 0.00 70 10 12.50 - - - OTOGL 0 genome.wustl.edu 37 12 80765807 80765807 + Missense_Mutation SNP G G A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 12 80765807 80765807 G A SNP OTOGL ENST00000298820 human ensembl 69_37n +1 novel missense c.1940 p.G647E 0.000 NULL pfam_VWF_type-D,superfamily_TIL_dom,smart_Unchr_dom_Cys-rich,smart_Cys_knot_C,pfscan_Cys_knot_C - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region OTOGL HGNC ENSG00000165899 91 0 0.00 83 15 15.15 - - - PDCD10 0 genome.wustl.edu 37 3 167437925 167437925 + Missense_Mutation SNP C C G TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 3 167437925 167437925 C G SNP PDCD10 ENST00000392750 human ensembl 69_37n -1 known missense c.21 p.E7D 1.000 NULL pfam_DUF1241 - no_errors PDCD10 HGNC ENSG00000114209 120 0 0.00 95 13 12.04 - - - POTEE 0 genome.wustl.edu 37 2 132021946 132021946 + Missense_Mutation SNP G G A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 2 132021946 132021946 G A SNP POTEE ENST00000356920 human ensembl 69_37n +1 known missense c.2918 p.G973D 1.000 pfam_Actin-like,smart_Actin-like pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like - no_errors AC131180.1 Clone_based_ensembl_gene ENSG00000188219 22 0 0.00 12 6 33.33 - - - PRKAR1A 0 genome.wustl.edu 37 17 66526498 66526498 + Nonsense_Mutation SNP C C T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 17 66526498 66526498 C T SNP PRKAR1A ENST00000358598 human ensembl 69_37n +1 known nonsense c.1054 p.R352* 1.000 pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin - no_errors PRKAR1A HGNC ENSG00000108946 76 0 0.00 71 12 14.46 - - - TM4SF19 0 genome.wustl.edu 37 3 196054386 196054386 + Missense_Mutation SNP C C A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 3 196054386 196054386 C A SNP TM4SF19 ENST00000273695 human ensembl 69_37n -1 known missense c.76 p.A26S 0.828 pfam_L6_membrane pfam_L6_membrane - no_errors TM4SF19 HGNC ENSG00000145107 21 0 0.00 13 8 38.10 - - - TNFRSF11A 0 genome.wustl.edu 37 18 60036105 60036105 + Missense_Mutation SNP G G A TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 18 60036105 60036105 G A SNP TNFRSF11A ENST00000586569 human ensembl 69_37n +1 known missense c.955 p.A319T 0.000 NULL pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg - no_errors TNFRSF11A HGNC ENSG00000141655 46 0 0.00 36 13 26.53 - - - TNPO3 0 genome.wustl.edu 37 7 128658078 128658078 + Missense_Mutation SNP G G C TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 7 128658078 128658078 G C SNP TNPO3 ENST00000393245 human ensembl 69_37n -1 known missense c.254 p.S85C 1.000 superfamily_ARM-type_fold pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold - no_errors TNPO3 HGNC ENSG00000064419 65 0 0.00 86 13 13.00 - - - TTN 0 genome.wustl.edu 37 2 179438786 179438786 + Missense_Mutation SNP C C G TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 2 179438786 179438786 C G SNP TTN ENST00000342992 human ensembl 69_37n -1 known missense c.64369 p.E21457Q 1.000 superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors TTN HGNC ENSG00000155657 64 0 0.00 45 7 13.21 - - - UGP2 0 genome.wustl.edu 37 2 64117287 64117287 + Missense_Mutation SNP G G T TCGA-AR-A24U-01A-11D-A167-09 TCGA-AR-A24U-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 567cdc6c-df03-4642-8cbc-a269769ce1a1 12e573ba-3762-4877-b0c4-3631afa3c30b 2 64117287 64117287 G T SNP UGP2 ENST00000337130 human ensembl 69_37n +1 known missense c.1387 p.D463Y 1.000 pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr - no_errors UGP2 HGNC ENSG00000169764 78 0 0.00 32 5 13.16 - - -