Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CACNA2D3 0 genome.wustl.edu 37 3 55107522 55107522 + Missense_Mutation SNP T T C TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 3 55107522 55107522 T C SNP CACNA2D3 ENST00000288197 human ensembl 69_37n +1 known missense c.3038 p.V1013A 1.000 NULL pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A - no_errors CACNA2D3 HGNC ENSG00000157445 106 0 0.00 90 16 14.95 - - - E2F2 0 genome.wustl.edu 37 1 23847527 23847527 + Silent SNP C C T TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 1 23847527 23847527 C T SNP E2F2 ENST00000361729 human ensembl 69_37n -1 known silent c.615 p.G205 1.000 NULL pfam_E2F_TDP - no_errors E2F2 HGNC ENSG00000007968 73 0 0.00 47 23 32.86 - - - FAM122C 0 genome.wustl.edu 37 X 133955536 133955536 + RNA SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a X 133955536 133955536 G A SNP FAM122C ENST00000495147 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors FAM122C HGNC ENSG00000156500 505 1 0.20 214 49 18.63 - - - FBXO40 0 genome.wustl.edu 37 3 121342188 121342188 + Missense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 3 121342188 121342188 G A SNP FBXO40 ENST00000338040 human ensembl 69_37n +1 known missense c.1912 p.E638K 0.962 superfamily_F-box_dom_cyclin-like superfamily_F-box_dom_cyclin-like,superfamily_TRAF-like,pfscan_F-box_dom_cyclin-like,pfscan_Znf_TRAF - no_errors FBXO40 HGNC ENSG00000163833 40 0 0.00 23 6 20.69 - - - GPS2 0 genome.wustl.edu 37 17 7217447 7217447 + Nonsense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 17 7217447 7217447 G A SNP GPS2 ENST00000380728 human ensembl 69_37n -1 known nonsense c.349 p.Q117* 1.000 NULL NULL - no_errors GPS2 HGNC ENSG00000132522 423 0 0.00 112 66 37.08 - - - LLGL1 0 genome.wustl.edu 37 17 18145296 18145296 + Silent SNP C C T TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 17 18145296 18145296 C T SNP LLGL1 ENST00000316843 human ensembl 69_37n +1 known silent c.2865 p.R955 0.000 NULL pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant,pfscan_WD40_repeat - no_errors LLGL1 HGNC ENSG00000131899 72 0 0.00 28 16 36.36 - - - MAP2K4 0 genome.wustl.edu 37 17 12032570 12032571 + Frame_Shift_Ins INS - - TC TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 17 12032570 12032571 - TC INS MAP2K4 ENST00000415385 human ensembl 69_37n +1 known frame_shift_ins c.1039_1040 p.S350fs 1.000:1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors MAP2K4 HGNC ENSG00000065559 277 0 0.00 92 29 23.97 - - - MLLT4 0 genome.wustl.edu 37 6 168289974 168289974 + Nonsense_Mutation SNP T T G TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 6 168289974 168289974 T G SNP MLLT4 ENST00000366806 human ensembl 69_37n +1 known nonsense c.977 p.L326* 1.000 pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc - no_errors MLLT4 HGNC ENSG00000130396 408 0 0.00 112 45 28.66 - - - MYOM3 0 genome.wustl.edu 37 1 24390618 24390618 + Missense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 1 24390618 24390618 G A SNP MYOM3 ENST00000330966 human ensembl 69_37n -1 known missense c.3575 p.A1192V 0.980 smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors MYOM3 HGNC ENSG00000142661 169 0 0.00 86 38 30.65 - - - NUMBL 0 genome.wustl.edu 37 19 41183152 41183152 + Missense_Mutation SNP G G C TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 19 41183152 41183152 G C SNP NUMBL ENST00000252891 human ensembl 69_37n -1 known missense c.715 p.P239A 0.000 pirsf_Numb/numb-like pfam_Numb_domain,pfam_PTyr_interaction_dom,pfam_PTB,smart_PTyr_interaction_dom,pirsf_Numb/numb-like,pfscan_PTyr_interaction_dom - no_errors NUMBL HGNC ENSG00000105245 32 0 0.00 23 4 14.81 - - - PCDH12 0 genome.wustl.edu 37 5 141334577 141334577 + Missense_Mutation SNP T T G TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 5 141334577 141334577 T G SNP PCDH12 ENST00000231484 human ensembl 69_37n -1 known missense c.2840 p.N947T 1.000 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH12 HGNC ENSG00000113555 15 0 0.00 13 4 23.53 - - - PDCD11 0 genome.wustl.edu 37 10 105200238 105200238 + Missense_Mutation SNP A A T TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 10 105200238 105200238 A T SNP PDCD11 ENST00000369797 human ensembl 69_37n +1 known missense c.4340 p.Q1447L 0.191 NULL pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1 - no_errors PDCD11 HGNC ENSG00000148843 296 0 0.00 179 51 22.17 - - - PKD1L3 0 genome.wustl.edu 37 16 71976599 71976599 + RNA SNP C C T TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 16 71976599 71976599 C T SNP PKD1L3 ENST00000335106 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors PKD1L3 HGNC ENSG00000187008 182 0 0.00 81 21 20.59 - - - PLA2G15 0 genome.wustl.edu 37 16 68293055 68293055 + Missense_Mutation SNP A A G TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 16 68293055 68293055 A G SNP PLA2G15 ENST00000219345 human ensembl 69_37n +1 known missense c.734 p.N245S 1.000 pfam_LACT/PDAT_acylTrfase pfam_LACT/PDAT_acylTrfase - no_errors PLA2G15 HGNC ENSG00000103066 22 0 0.00 20 8 28.57 - - - RPP30 0 genome.wustl.edu 37 10 92656100 92656100 + Silent SNP C C T TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 10 92656100 92656100 C T SNP RPP30 ENST00000413330 human ensembl 69_37n +1 known silent c.648 p.D216 1.000 pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like - no_errors RPP30 HGNC ENSG00000148688 237 1 0.42 135 30 18.18 - - - SLC25A22 0 genome.wustl.edu 37 11 793561 793561 + Silent SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 11 793561 793561 G A SNP SLC25A22 ENST00000320230 human ensembl 69_37n -1 known silent c.261 p.N87 0.997 pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier - no_errors SLC25A22 HGNC ENSG00000177542 91 0 0.00 82 15 15.46 - - - SLC9C1 0 genome.wustl.edu 37 3 111901058 111901058 + Missense_Mutation SNP G G C TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 3 111901058 111901058 G C SNP SLC9C1 ENST00000305815 human ensembl 69_37n -1 known missense c.2571 p.I857M 0.012 NULL pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom - no_errors SLC9C1 HGNC ENSG00000172139 199 0 0.00 69 23 25.00 - - - TBP 0 genome.wustl.edu 37 6 170871052 170871052 + Silent SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 6 170871052 170871052 G A SNP TBP ENST00000230354 human ensembl 69_37n +1 known silent c.228 p.Q76 0.994 NULL pfam_TBP,prints_TBP - no_errors TBP HGNC ENSG00000112592 24 0 0.00 11 7 38.89 - - - TUBGCP5 0 genome.wustl.edu 37 15 22866738 22866738 + Missense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 15 22866738 22866738 G A SNP TUBGCP5 ENST00000283645 human ensembl 69_37n +1 known missense c.2350 p.V784I 1.000 pfam_Spc97_Spc98 pfam_Spc97_Spc98 - no_errors TUBGCP5 HGNC ENSG00000153575 271 0 0.00 135 44 24.58 - - - UNC45B 0 genome.wustl.edu 37 17 33504550 33504550 + Missense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 17 33504550 33504550 G A SNP UNC45B ENST00000268876 human ensembl 69_37n +1 known missense c.2182 p.D728N 1.000 superfamily_ARM-type_fold pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors UNC45B HGNC ENSG00000141161 70 0 0.00 32 6 15.79 - - - ZNF511 0 genome.wustl.edu 37 10 135125374 135125374 + Missense_Mutation SNP G G A TCGA-AR-A1AU-01A-11D-A12Q-09 TCGA-AR-A1AU-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a 10 135125374 135125374 G A SNP ZNF511 ENST00000359035 human ensembl 69_37n +1 known missense c.709 p.V237I 0.000 NULL smart_Znf_C2H2-like - no_errors ZNF511 HGNC ENSG00000198546 15 0 0.00 5 8 61.54 - - -