Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AHCTF1 0 genome.wustl.edu 37 1 247063726 247063726 + Missense_Mutation SNP T T G TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 1 247063726 247063726 T G SNP AHCTF1 ENST00000326225 human ensembl 69_37n -1 known missense c.1190 p.N397T 1.000 NULL superfamily_Quinonprotein_ADH-like - no_errors AHCTF1 HGNC ENSG00000153207 139 0 0.00 180 32 15.09 - - - ARF1 0 genome.wustl.edu 37 1 228285614 228285614 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 1 228285614 228285614 G A SNP ARF1 ENST00000272102 human ensembl 69_37n +1 known missense c.446 p.R149H 1.000 pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors ARF1 HGNC ENSG00000143761 97 0 0.00 121 49 28.49 - - - C4BPA 0 genome.wustl.edu 37 1 207288784 207288784 + Missense_Mutation SNP G G C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 1 207288784 207288784 G C SNP C4BPA ENST00000367070 human ensembl 69_37n +1 known missense c.352 p.E118Q 0.997 pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors C4BPA HGNC ENSG00000123838 416 0 0.00 362 266 42.29 - - - CALHM2 0 genome.wustl.edu 37 10 105207117 105207117 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 10 105207117 105207117 G A SNP CALHM2 ENST00000260743 human ensembl 69_37n -1 known missense c.764 p.A255V 0.983 NULL NULL - no_errors CALHM2 HGNC ENSG00000138172 30 0 0.00 28 10 26.32 - - - CASP8AP2 0 genome.wustl.edu 37 6 90572907 90572907 + RNA SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 6 90572907 90572907 T C SNP CASP8AP2 ENST00000237177 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors CASP8AP2 HGNC ENSG00000118412 171 0 0.00 124 40 24.39 - - - CDH1 0 genome.wustl.edu 37 16 68849608 68849608 + Frame_Shift_Del DEL A A - TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 16 68849608 68849608 A - DEL CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_del c.1511 p.I505fs 0.096 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 206 0 0.00 121 34 21.52 - - - DLL4 0 genome.wustl.edu 37 15 41227207 41227207 + Missense_Mutation SNP C C T TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 15 41227207 41227207 C T SNP DLL4 ENST00000249749 human ensembl 69_37n +1 known missense c.1132 p.R378W 0.932 pfam_EGF-like_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,superfamily_Growth_fac_rcpt,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom - no_errors DLL4 HGNC ENSG00000128917 29 0 0.00 20 6 23.08 - - - ENG 0 genome.wustl.edu 37 9 130580642 130580642 + Silent SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 9 130580642 130580642 T C SNP ENG ENST00000373203 human ensembl 69_37n -1 known silent c.1443 p.P481 0.018 pfam_Zona_pellucida_Endoglin/CD105 pfam_Zona_pellucida_Endoglin/CD105 - no_errors ENG HGNC ENSG00000106991 28 0 0.00 26 10 27.78 - - - ETV1 0 genome.wustl.edu 37 7 13940377 13940377 + Missense_Mutation SNP C C T TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 7 13940377 13940377 C T SNP ETV1 ENST00000405218 human ensembl 69_37n -1 known missense c.1198 p.G400R 1.000 pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets - no_errors ETV1 HGNC ENSG00000006468 395 0 0.00 312 78 20.00 - - - GIN1 0 genome.wustl.edu 37 5 102432415 102432415 + Missense_Mutation SNP T T A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 5 102432415 102432415 T A SNP GIN1 ENST00000399004 human ensembl 69_37n -1 known missense c.1124 p.K375I 1.000 NULL pfam_Integrase_cat-core,pfam_Znf_H2C2_histone_UAS-bd,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core - no_errors GIN1 HGNC ENSG00000145723 586 0 0.00 453 125 21.63 - - - GPSM1 0 genome.wustl.edu 37 9 139229081 139229081 + Silent SNP C C T TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 9 139229081 139229081 C T SNP GPSM1 ENST00000440944 human ensembl 69_37n +1 known silent c.246 p.H82 0.998 smart_TPR_repeat pfam_GoLoco_motif,pfam_TPR-1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors GPSM1 HGNC ENSG00000160360 36 0 0.00 35 9 20.45 - - - HIVEP1 0 genome.wustl.edu 37 6 12163882 12163882 + Missense_Mutation SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 6 12163882 12163882 T C SNP HIVEP1 ENST00000379388 human ensembl 69_37n +1 known missense c.7345 p.S2449P 0.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP1 HGNC ENSG00000095951 131 1 0.75 134 36 21.18 - - - IFT46 0 genome.wustl.edu 37 11 118425295 118425295 + Missense_Mutation SNP C C T TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 11 118425295 118425295 C T SNP IFT46 ENST00000264020 human ensembl 69_37n -1 known missense c.515 p.R172H 1.000 pfam_Intraflagellar_transp_cmplxB pfam_Intraflagellar_transp_cmplxB - no_errors IFT46 HGNC ENSG00000118096 290 0 0.00 295 64 17.78 - - - KIR2DL4 0 genome.wustl.edu 37 19 55325455 55325455 + Silent SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 19 55325455 55325455 G A SNP KIR2DL4 ENST00000396284 human ensembl 69_37n +1 known silent c.1083 p.L361 0.001 NULL pfam_Immunoglobulin,smart_Ig_sub - no_errors KIR2DL4 HGNC ENSG00000189013 34 0 0.00 33 4 10.81 - - - KRAS 0 genome.wustl.edu 37 12 25398285 25398285 + Missense_Mutation SNP C C A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 12 25398285 25398285 C A SNP KRAS ENST00000256078 human ensembl 69_37n -1 known missense c.34 p.G12C 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors KRAS HGNC ENSG00000133703 340 0 0.00 330 103 23.79 - - - MOGS 0 genome.wustl.edu 37 2 74689879 74689879 + Missense_Mutation SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 2 74689879 74689879 T C SNP MOGS ENST00000233616 human ensembl 69_37n -1 known missense c.1037 p.N346S 0.001 pfam_Glycoside_hydrolase_63 pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like - no_errors MOGS HGNC ENSG00000115275 134 0 0.00 84 15 15.15 - - - MTERFD3 0 genome.wustl.edu 37 12 107372349 107372349 + Silent SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 12 107372349 107372349 T C SNP MTERFD3 ENST00000240050 human ensembl 69_37n -1 known silent c.144 p.T48 0.503 NULL pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel - no_errors MTERFD3 HGNC ENSG00000120832 748 0 0.00 568 113 16.59 - - - PIK3CA 0 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 3 178936091 178936091 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1633 p.E545K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 388 1 0.26 265 57 17.70 - - - PROSER1 0 genome.wustl.edu 37 13 39587543 39587543 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 13 39587543 39587543 G A SNP PROSER1 ENST00000350125 human ensembl 69_37n -1 known missense c.1780 p.P594S 1.000 NULL NULL - no_errors PROSER1 HGNC ENSG00000120685 249 0 0.00 271 74 21.45 - - - RPGRIP1L 0 genome.wustl.edu 37 16 53691373 53691373 + Missense_Mutation SNP C C G TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 16 53691373 53691373 C G SNP RPGRIP1L ENST00000379925 human ensembl 69_37n -1 known missense c.1573 p.D525H 1.000 NULL pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting - no_errors RPGRIP1L HGNC ENSG00000103494 297 0 0.00 216 60 21.74 - - - RPRD1B 0 genome.wustl.edu 37 20 36694652 36694653 + Frame_Shift_Del DEL AC AC - TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 AC AC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 20 36694652 36694653 AC - DEL RPRD1B ENST00000373433 human ensembl 69_37n +1 known frame_shift_del c.825_826 p.K275fs 0.982:1.000 NULL pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD - no_errors RPRD1B HGNC ENSG00000101413 138 0 0.00 127 29 17.68 - - - TAF1 0 genome.wustl.edu 37 X 70602701 70602701 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 X 70602701 70602701 G A SNP TAF1 ENST00000449580 human ensembl 69_37n +1 known missense c.1753 p.G585R 1.000 pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591 pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1 HGNC ENSG00000147133 539 0 0.00 474 132 21.78 - - - TNRC6A 0 genome.wustl.edu 37 16 24833445 24833445 + Missense_Mutation SNP G G A TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 16 24833445 24833445 G A SNP TNRC6A ENST00000395799 human ensembl 69_37n +1 known missense c.5350 p.V1784I 1.000 NULL pfam_Argonaute_hook_dom,superfamily_UBA-like - no_errors TNRC6A HGNC ENSG00000090905 371 0 0.00 496 108 17.42 - - - TOR1A 0 genome.wustl.edu 37 9 132576329 132576329 + Missense_Mutation SNP G G T TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 9 132576329 132576329 G T SNP TOR1A ENST00000351698 human ensembl 69_37n -1 known missense c.921 p.F307L 1.000 pirsf_Torsin_subgr pfam_Torsin,pirsf_Torsin_subgr - no_errors TOR1A HGNC ENSG00000136827 348 0 0.00 320 78 19.35 - - - TSPAN2 0 genome.wustl.edu 37 1 115615557 115615557 + Silent SNP T T C TCGA-AR-A1AL-01A-21D-A12Q-09 TCGA-AR-A1AL-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8495c66e-dc95-4eae-909b-b51b8bc84889 c3cd25a8-9372-4861-91a1-bace1cdc7b54 1 115615557 115615557 T C SNP TSPAN2 ENST00000369516 human ensembl 69_37n -1 known silent c.141 p.S47 0.984 pfam_Tetraspanin/Peripherin pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin - no_errors TSPAN2 HGNC ENSG00000134198 217 0 0.00 206 48 18.90 - - -