Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CDH11 0 genome.wustl.edu 37 16 65032486 65032486 + Missense_Mutation SNP C C T TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 16 65032486 65032486 C T SNP CDH11 ENST00000268603 human ensembl 69_37n -1 known missense c.502 p.V168M 1.000 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH11 HGNC ENSG00000140937 295 0 0.00 46 95 67.38 - - - CDH17 0 genome.wustl.edu 37 8 95158390 95158391 + Frame_Shift_Ins INS - - C TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 8 95158390 95158391 - C INS CDH17 ENST00000027335 human ensembl 69_37n -1 known frame_shift_ins c.1933_1932 p.S644fs 0.027:0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors CDH17 HGNC ENSG00000079112 121 0 0.00 113 49 30.25 - - - COL7A1 0 genome.wustl.edu 37 3 48609590 48609590 + Silent SNP G G A TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 3 48609590 48609590 G A SNP COL7A1 ENST00000328333 human ensembl 69_37n -1 known silent c.6993 p.D2331 0.990 pfam_Collagen pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m - no_errors COL7A1 HGNC ENSG00000114270 35 0 0.00 19 6 24.00 - - - GSPT2 0 genome.wustl.edu 37 X 51488353 51488353 + Missense_Mutation SNP A A C TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 X 51488353 51488353 A C SNP GSPT2 ENST00000340438 human ensembl 69_37n +1 known missense c.1631 p.H544P 1.000 pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd - no_errors GSPT2 HGNC ENSG00000189369 286 0 0.00 162 125 43.40 - - - MCMBP 0 genome.wustl.edu 37 10 121591584 121591584 + Missense_Mutation SNP C C T TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 10 121591584 121591584 C T SNP MCMBP ENST00000360003 human ensembl 69_37n -1 known missense c.1742 p.R581Q 1.000 pfam_MCM_complex-bd pfam_MCM_complex-bd - no_errors MCMBP HGNC ENSG00000197771 123 0 0.00 99 36 26.67 - - - NIM1 0 genome.wustl.edu 37 5 43277278 43277278 + Missense_Mutation SNP G G A TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 5 43277278 43277278 G A SNP NIM1 ENST00000326035 human ensembl 69_37n +1 known missense c.412 p.E138K 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors AC114947.1 Clone_based_vega_gene ENSG00000177453 367 0 0.00 165 106 39.11 - - - NRXN2 0 genome.wustl.edu 37 11 64457918 64457919 + Frame_Shift_Ins INS - - C TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 11 64457918 64457919 - C INS NRXN2 ENST00000265459 human ensembl 69_37n -1 known frame_shift_ins c.809_808 p.A270fs 1.000:1.000 NULL pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors NRXN2 HGNC ENSG00000110076 27 0 0.00 23 3 11.54 - - - OR2G3 0 genome.wustl.edu 37 1 247769321 247769321 + Missense_Mutation SNP C C T TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 1 247769321 247769321 C T SNP OR2G3 ENST00000320002 human ensembl 69_37n +1 known missense c.434 p.A145V 0.003 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR2G3 HGNC ENSG00000177476 586 0 0.00 353 250 41.46 - - - OR2T33 0 genome.wustl.edu 37 1 248436408 248436408 + Missense_Mutation SNP C C A TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 1 248436408 248436408 C A SNP OR2T33 ENST00000318021 human ensembl 69_37n -1 known missense c.709 p.A237S 0.992 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR2T33 HGNC ENSG00000177212 222 0 0.00 142 82 36.61 - - - OVCH1 0 genome.wustl.edu 37 12 29604408 29604408 + Nonsense_Mutation SNP C C T TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 12 29604408 29604408 C T SNP OVCH1 ENST00000318184 human ensembl 69_37n -1 known nonsense c.2625 p.W875* 0.802 pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6 - no_errors OVCH1 HGNC ENSG00000187950 63 0 0.00 60 32 34.78 - - - PFKP 0 genome.wustl.edu 37 10 3172105 3172106 + Frame_Shift_Ins INS - - G TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 10 3172105 3172106 - G INS PFKP ENST00000381125 human ensembl 69_37n +1 known frame_shift_ins c.1778_1779 p.L596fs 1.000:1.000 pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk - no_errors PFKP HGNC ENSG00000067057 24 0 0.00 13 2 13.33 - - - PRICKLE2 0 genome.wustl.edu 37 3 64133064 64133064 + Missense_Mutation SNP C C T TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 3 64133064 64133064 C T SNP PRICKLE2 ENST00000295902 human ensembl 69_37n -1 known missense c.1102 p.D368N 1.000 NULL pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM - no_errors PRICKLE2 HGNC ENSG00000163637 108 0 0.00 34 40 54.05 - - - PTAR1 0 genome.wustl.edu 37 9 72338284 72338284 + Missense_Mutation SNP A A C TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 9 72338284 72338284 A C SNP PTAR1 ENST00000340434 human ensembl 69_37n -1 known missense c.905 p.L302R 1.000 pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a - no_errors PTAR1 HGNC ENSG00000188647 341 0 0.00 227 118 34.20 - - - SLC45A4 0 genome.wustl.edu 37 8 142228731 142228731 + Silent SNP G G A TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 8 142228731 142228731 G A SNP SLC45A4 ENST00000517878 human ensembl 69_37n -1 known silent c.1008 p.H336 0.363 superfamily_MFS_dom_general_subst_transpt superfamily_MFS_dom_general_subst_transpt - no_errors SLC45A4 HGNC ENSG00000022567 25 0 0.00 1 12 85.71 - - - SLC4A4 0 genome.wustl.edu 37 4 72429510 72429510 + Missense_Mutation SNP T T C TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 4 72429510 72429510 T C SNP SLC4A4 ENST00000264485 human ensembl 69_37n +1 known missense c.3100 p.S1034P 1.000 tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk - no_errors SLC4A4 HGNC ENSG00000080493 186 0 0.00 120 84 41.18 - - - SYNPO2L 0 genome.wustl.edu 37 10 75408227 75408227 + Missense_Mutation SNP G G A TCGA-AO-A0JI-01A-21W-A100-09 TCGA-AO-A0JI-10A-01W-A100-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 861297ec-2c88-4717-ae63-eb8e21fe8c52 f1f91ae3-80bd-40ed-b495-d8dd96299105 10 75408227 75408227 G A SNP SYNPO2L ENST00000394810 human ensembl 69_37n -1 known missense c.1183 p.R395C 1.000 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SYNPO2L HGNC ENSG00000166317 33 0 0.00 26 5 16.13 - - -