Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AP3D1 0 genome.wustl.edu 37 19 2114127 2114127 + Frame_Shift_Del DEL C C - TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 19 2114127 2114127 C - DEL AP3D1 ENST00000355272 human ensembl 69_37n -1 known frame_shift_del c.2598 p.K867fs 0.158 pfam_BLV_receptor,pirsf_AP3_complex_dsu pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu - no_errors AP3D1 HGNC ENSG00000065000 163 0 0.00 124 15 10.71 - - - C2orf16 0 genome.wustl.edu 37 2 27803312 27803312 + Missense_Mutation SNP G G C TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 2 27803312 27803312 G C SNP C2orf16 ENST00000408964 human ensembl 69_37n +1 known missense c.3873 p.K1291N 0.063 NULL NULL - no_errors C2orf16 HGNC ENSG00000221843 108 0 0.00 57 16 21.92 - - - C5orf60 0 genome.wustl.edu 37 5 179071958 179071958 + Missense_Mutation SNP C C G TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 5 179071958 179071958 C G SNP C5orf60 ENST00000448248 human ensembl 69_37n -1 known missense c.64 p.D22H 0.027 NULL NULL - no_errors C5orf60 HGNC ENSG00000204661 29 0 0.00 74 13 14.94 - - - CCDC74B 0 genome.wustl.edu 37 2 130897620 130897620 + Missense_Mutation SNP A A G TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 2 130897620 130897620 A G SNP CCDC74B ENST00000392984 human ensembl 69_37n -1 known missense c.1232 p.V411A 0.003 NULL NULL - no_errors CCDC74B HGNC ENSG00000152076 12 0 0.00 48 21 30.43 - - - GOLGA6L2 0 genome.wustl.edu 37 15 23685205 23685206 + Frame_Shift_Ins INS - - C TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 15 23685205 23685206 - C INS GOLGA6L2 ENST00000567107 human ensembl 69_37n -1 putative frame_shift_ins c.2417_2416 p.A806fs 0.004:0.005 NULL NULL - no_errors GOLGA6L2 HGNC ENSG00000174450 27 0 0.00 18 5 21.74 - - - GPR98 0 genome.wustl.edu 37 5 89990148 89990149 + Frame_Shift_Del DEL TA TA - TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 TA TA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 5 89990148 89990149 TA - DEL GPR98 ENST00000405460 human ensembl 69_37n +1 known frame_shift_del c.7575_7576 p.I2526fs 0.154:0.184 NULL pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like - no_errors GPR98 HGNC ENSG00000164199 179 0 0.00 153 36 19.05 - - - POTEB 0 genome.wustl.edu 37 15 22077651 22077651 + Silent SNP A A G TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 15 22077651 22077651 A G SNP POTEB ENST00000439682 human ensembl 69_37n -1 known silent c.579 p.A193 0.570 superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors POTEB HGNC ENSG00000233917 11 0 0.00 4 3 42.86 - - - RPS27L 0 genome.wustl.edu 37 15 63448632 63448633 + In_Frame_Ins INS - - TAC TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 15 63448632 63448633 - TAC INS RPS27L ENST00000330964 human ensembl 69_37n -1 known in_frame_ins c.95_94 p.F32in_frame_insCI 1.000:1.000 pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd_dom - no_errors RPS27L HGNC ENSG00000185088 861 0 0.00 172 23 11.79 - - - TG 0 genome.wustl.edu 37 8 133899093 133899093 + Silent SNP A A G TCGA-AO-A03U-01B-21D-A10M-09 TCGA-AO-A03U-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1e0ecd57-5c7d-4495-874d-9e286c999c22 24b629ef-6829-4494-8843-9877a56303cf 8 133899093 133899093 A G SNP TG ENST00000220616 human ensembl 69_37n +1 known silent c.1476 p.R492 0.361 pirsf_Thyroglobulin pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1 - no_errors TG HGNC ENSG00000042832 48 0 0.00 59 14 19.18 - - -