Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CDH1 0 genome.wustl.edu 37 16 68842433 68842433 + Frame_Shift_Del DEL A A - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 16 68842433 68842433 A - DEL CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_del c.494 p.N166fs 1.000 pfam_Cadherin,superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 94 0 0.00 58 47 44.76 - - - CDH1 0 genome.wustl.edu 37 16 68842438 68842439 + In_Frame_Ins INS - - CCC TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 16 68842438 68842439 - CCC INS CDH1 ENST00000261769 human ensembl 69_37n +1 known in_frame_ins c.499_500 p.E167in_frame_insAQ 1.000:1.000 pfam_Cadherin,superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 90 0 0.00 43 46 51.69 - - - COMMD2 0 genome.wustl.edu 37 3 149470040 149470042 + In_Frame_Del DEL GAA GAA - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 3 149470040 149470042 GAA - DEL COMMD2 ENST00000473414 human ensembl 69_37n -1 known in_frame_del c.102_100 p.F34in_frame_del 1.000:1.000:1.000 pfam_HCaRG pfam_HCaRG - no_errors COMMD2 HGNC ENSG00000114744 142 0 0.00 57 50 45.05 - - - CR1 0 genome.wustl.edu 37 1 207793390 207793390 + Missense_Mutation SNP C C G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 207793390 207793390 C G SNP CR1 ENST00000367049 human ensembl 69_37n +1 known missense c.7232 p.P2411R 0.995 pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CR1 HGNC ENSG00000203710 243 0 0.00 322 108 25.12 - - - CXorf65 0 genome.wustl.edu 37 X 70323923 70323923 + Missense_Mutation SNP G G T TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 X 70323923 70323923 G T SNP CXorf65 ENST00000374251 human ensembl 69_37n -1 known missense c.466 p.R156S 0.088 NULL NULL - no_errors CXorf65 HGNC ENSG00000204165 216 0 0.00 275 166 37.64 - - - EBF4 0 genome.wustl.edu 37 20 2730518 2730518 + Missense_Mutation SNP T T G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 20 2730518 2730518 T G SNP EBF4 ENST00000449079 human ensembl 69_37n +1 known missense c.1217 p.V406G 1.000 pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt - no_errors EBF4 HGNC ENSG00000088881 46 0 0.00 30 5 14.29 - - - FARSB 0 genome.wustl.edu 37 2 223436667 223436667 + Missense_Mutation SNP G G C TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 2 223436667 223436667 G C SNP FARSB ENST00000281828 human ensembl 69_37n -1 known missense c.1693 p.H565D 1.000 tigrfam_Phe-tRNA-synth_IIc_bsu_arc pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc - no_errors FARSB HGNC ENSG00000116120 110 0 0.00 82 64 43.84 - - - FMN2 0 genome.wustl.edu 37 1 240370946 240370946 + Missense_Mutation SNP C C T TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 240370946 240370946 C T SNP FMN2 ENST00000319653 human ensembl 69_37n +1 known missense c.2834 p.P945L 0.003 pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom - no_errors FMN2 HGNC ENSG00000155816 29 0 0.00 55 19 25.68 - - - IPO9 0 genome.wustl.edu 37 1 201827586 201827587 + Frame_Shift_Del DEL AG AG - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 201827586 201827587 AG - DEL IPO9 ENST00000361565 human ensembl 69_37n +1 known frame_shift_del c.1233_1234 p.D412fs 0.978:1.000 superfamily_ARM-type_fold pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N - no_errors IPO9 HGNC ENSG00000198700 16 0 0.00 121 16 11.68 - - - MUC16 0 genome.wustl.edu 37 19 9018133 9018133 + Missense_Mutation SNP C C A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 19 9018133 9018133 C A SNP MUC16 ENST00000397910 human ensembl 69_37n -1 known missense c.37805 p.R12602M 0.848 pfam_SEA pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC16 HGNC ENSG00000181143 848 0 0.00 291 238 44.99 - - - MUC20 0 genome.wustl.edu 37 3 195452668 195452668 + Silent SNP C C G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 3 195452668 195452668 C G SNP MUC20 ENST00000447234 human ensembl 69_37n +1 known silent c.1194 p.P398 0.004 NULL NULL - no_errors MUC20 HGNC ENSG00000176945 46 0 0.00 88 13 12.87 - - - MUC4 0 genome.wustl.edu 37 3 195515141 195515141 + Missense_Mutation SNP A A G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 3 195515141 195515141 A G SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.3310 p.S1104P 0.000 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 47 0 0.00 330 47 12.43 - - - NPAS1 0 genome.wustl.edu 37 19 47543707 47543707 + Missense_Mutation SNP G G C TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 19 47543707 47543707 G C SNP NPAS1 ENST00000449844 human ensembl 69_37n +1 known missense c.968 p.S323T 0.998 pfam_PAS_fold_3,smart_PAS pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd - no_errors NPAS1 HGNC ENSG00000130751 39 0 0.00 22 11 33.33 - - - OPA1 0 genome.wustl.edu 37 3 193353241 193353243 + In_Frame_Del DEL AGG AGG - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 AGG AGG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 3 193353241 193353243 AGG - DEL OPA1 ENST00000361510 human ensembl 69_37n +1 known in_frame_del c.878_880 p.E294in_frame_del 1.000:1.000:1.000 NULL pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin - no_errors OPA1 HGNC ENSG00000198836 50 0 0.00 199 80 28.67 - - - OR10J1 0 genome.wustl.edu 37 1 159410003 159410003 + Missense_Mutation SNP G G A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 159410003 159410003 G A SNP OR10J1 ENST00000423932 human ensembl 69_37n +1 known missense c.455 p.R152H 0.010 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR10J1 HGNC ENSG00000196184 145 0 0.00 221 74 25.00 - - - PADI3 0 genome.wustl.edu 37 1 17575713 17575713 + Silent SNP G G A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 17575713 17575713 G A SNP PADI3 ENST00000375460 human ensembl 69_37n +1 known silent c.81 p.V27 1.000 pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub - no_errors PADI3 HGNC ENSG00000142619 106 0 0.00 107 82 42.93 - - - PFDN6 0 genome.wustl.edu 37 6 33258127 33258127 + Missense_Mutation SNP A A G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 6 33258127 33258127 A G SNP PFDN6 ENST00000374606 human ensembl 69_37n +1 known missense c.160 p.N54D 1.000 pfam_PFD_beta-like,superfamily_Prefoldin pfam_PFD_beta-like,superfamily_Prefoldin - no_errors PFDN6 HGNC ENSG00000204220 182 0 0.00 179 152 45.92 - - - PRDM16 0 genome.wustl.edu 37 1 3347638 3347638 + Missense_Mutation SNP G G A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 1 3347638 3347638 G A SNP PRDM16 ENST00000270722 human ensembl 69_37n +1 known missense c.3487 p.A1163T 0.002 NULL pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors PRDM16 HGNC ENSG00000142611 54 0 0.00 23 14 35.90 - - - PTPN13 0 genome.wustl.edu 37 4 87662819 87662820 + Frame_Shift_Del DEL TT TT - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 TT TT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 4 87662819 87662820 TT - DEL PTPN13 ENST00000436978 human ensembl 69_37n +1 known frame_shift_del c.2337_2338 p.F780fs 1.000:1.000 pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_FERM_central,smart_Band_41_domain,pfscan_FERM_domain pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN13 HGNC ENSG00000163629 175 0 0.00 271 35 11.33 - - - RYR1 0 genome.wustl.edu 37 19 38976254 38976254 + Silent SNP G G A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 19 38976254 38976254 G A SNP RYR1 ENST00000359596 human ensembl 69_37n +1 known silent c.4959 p.S1653 0.162 NULL pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif - no_errors RYR1 HGNC ENSG00000196218 24 0 0.00 4 7 63.64 - - - SFXN2 0 genome.wustl.edu 37 10 104489151 104489151 + Silent SNP G G A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 10 104489151 104489151 G A SNP SFXN2 ENST00000369893 human ensembl 69_37n +1 known silent c.507 p.K169 1.000 pfam_Mtc,tigrfam_Mtc pfam_Mtc,tigrfam_Mtc - no_errors SFXN2 HGNC ENSG00000156398 75 0 0.00 30 24 44.44 - - - SNAP23 0 genome.wustl.edu 37 15 42820532 42820533 + Frame_Shift_Del DEL TG TG - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 15 42820532 42820533 TG - DEL SNAP23 ENST00000249647 human ensembl 69_37n +1 known frame_shift_del c.339_340 p.V114fs 0.775:0.991 pfam_SNAP-25 pfam_T_SNARE_dom,pfam_SNAP-25,smart_T_SNARE_dom,pfscan_T_SNARE_dom - no_errors SNAP23 HGNC ENSG00000092531 40 0 0.00 88 59 40.14 - - - SNRNP35 0 genome.wustl.edu 37 12 123950441 123950441 + Missense_Mutation SNP C C A TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 12 123950441 123950441 C A SNP SNRNP35 ENST00000412157 human ensembl 69_37n +1 known missense c.369 p.D123E 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors SNRNP35 HGNC ENSG00000184209 74 0 0.00 182 31 14.55 - - - SPACA1 0 genome.wustl.edu 37 6 88769287 88769288 + Frame_Shift_Del DEL CA CA - TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 6 88769287 88769288 CA - DEL SPACA1 ENST00000237201 human ensembl 69_37n +1 known frame_shift_del c.591_592 p.T198fs 1.000:1.000 NULL NULL - no_errors SPACA1 HGNC ENSG00000118434 46 0 0.00 178 41 18.64 - - - TDRD3 0 genome.wustl.edu 37 13 61013901 61013901 + Missense_Mutation SNP C C G TCGA-A8-A09V-01A-11D-A045-09 TCGA-A8-A09V-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 818f1a34-17c5-409a-b5f5-4a8576db0d44 410ed951-300a-4227-bc61-52a1649301f6 13 61013901 61013901 C G SNP TDRD3 ENST00000535286 human ensembl 69_37n +1 known missense c.121 p.L41V 1.000 pfam_DUF1767 pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk - no_errors TDRD3 HGNC ENSG00000083544 66 0 0.00 100 61 37.89 - - -