Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AFF3 0 genome.wustl.edu 37 2 100194818 100194820 + In_Frame_Del DEL GCA GCA - TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 GCA GCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 2 100194818 100194820 GCA - DEL AFF3 ENST00000356421 human ensembl 69_37n -1 known in_frame_del c.2964_2962 p.C988in_frame_del 1.000:1.000:1.000 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF3 HGNC ENSG00000144218 126 0 0.00 105 29 21.48 - - - AFF3 0 genome.wustl.edu 37 2 100194823 100194824 + Frame_Shift_Del DEL CC CC - TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 CC CC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 2 100194823 100194824 CC - DEL AFF3 ENST00000356421 human ensembl 69_37n -1 known frame_shift_del c.2959_2958 p.D987fs 1.000:0.993 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF3 HGNC ENSG00000144218 124 0 0.00 79 27 25.47 - - - ANKRD12 0 genome.wustl.edu 37 18 9256071 9256074 + Frame_Shift_Del DEL AAAC AAAC - TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 AAAC AAAC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 18 9256071 9256074 AAAC - DEL ANKRD12 ENST00000262126 human ensembl 69_37n +1 known frame_shift_del c.2806_2809 p.K936fs 0.913:0.899:0.061:0.032 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD12 HGNC ENSG00000101745 206 0 0.00 324 150 31.65 - - - BIRC8 0 genome.wustl.edu 37 19 53793429 53793429 + Missense_Mutation SNP T T C TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 19 53793429 53793429 T C SNP BIRC8 ENST00000426466 human ensembl 69_37n -1 known missense c.199 p.K67E 0.068 pfam_BIR,smart_BIR,pfscan_BIR pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING - no_errors BIRC8 HGNC ENSG00000163098 164 0 0.00 130 18 12.16 - - - C12orf65 0 genome.wustl.edu 37 12 123738230 123738230 + Silent SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 12 123738230 123738230 C T SNP C12orf65 ENST00000253233 human ensembl 69_37n +1 known silent c.9 p.T3 0.002 NULL pfam_Pep_chain_release_fac_I_II - no_errors C12orf65 HGNC ENSG00000130921 103 0 0.00 43 50 53.76 - - - CAPN7 0 genome.wustl.edu 37 3 15270481 15270481 + Missense_Mutation SNP A A G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 3 15270481 15270481 A G SNP CAPN7 ENST00000253693 human ensembl 69_37n +1 known missense c.853 p.T285A 1.000 pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease - no_errors CAPN7 HGNC ENSG00000131375 247 1 0.40 263 158 37.44 - - - CASZ1 0 genome.wustl.edu 37 1 10719985 10719985 + Missense_Mutation SNP G G A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 1 10719985 10719985 G A SNP CASZ1 ENST00000377022 human ensembl 69_37n -1 known missense c.1114 p.R372C 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors CASZ1 HGNC ENSG00000130940 45 0 0.00 32 7 17.95 - - - CSF1R 0 genome.wustl.edu 37 5 149449828 149449828 + Silent SNP G G A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 5 149449828 149449828 G A SNP CSF1R ENST00000286301 human ensembl 69_37n -1 known silent c.1236 p.N412 0.019 pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors CSF1R HGNC ENSG00000182578 110 1 0.90 26 15 36.59 - - - CSMD1 0 genome.wustl.edu 37 8 2820779 2820779 + Missense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 8 2820779 2820779 C T SNP CSMD1 ENST00000520002 human ensembl 69_37n -1 known missense c.9422 p.R3141H 0.000 pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP - no_errors CSMD1 HGNC ENSG00000183117 127 1 0.78 46 57 55.34 - - - DCHS2 0 genome.wustl.edu 37 4 155242003 155242003 + Silent SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 4 155242003 155242003 C T SNP DCHS2 ENST00000357232 human ensembl 69_37n -1 known silent c.3183 p.V1061 0.980 pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors DCHS2 HGNC ENSG00000197410 357 0 0.00 534 73 12.03 - - - DYNC1H1 0 genome.wustl.edu 37 14 102467927 102467927 + Missense_Mutation SNP G G C TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 14 102467927 102467927 G C SNP DYNC1H1 ENST00000360184 human ensembl 69_37n +1 known missense c.4451 p.C1484S 1.000 pfam_Dynein_heavy_dom-2 pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase - no_errors DYNC1H1 HGNC ENSG00000197102 106 0 0.00 97 27 21.77 - - - FUBP3 0 genome.wustl.edu 37 9 133493263 133493263 + Missense_Mutation SNP G G T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 9 133493263 133493263 G T SNP FUBP3 ENST00000319725 human ensembl 69_37n +1 known missense c.647 p.G216V 1.000 pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1 pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1 - no_errors FUBP3 HGNC ENSG00000107164 40 0 0.00 11 26 70.27 - - - FUBP3 0 genome.wustl.edu 37 9 133498185 133498185 + Nonsense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 9 133498185 133498185 C T SNP FUBP3 ENST00000319725 human ensembl 69_37n +1 known nonsense c.862 p.Q288* 1.000 pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1 pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1 - no_errors FUBP3 HGNC ENSG00000107164 158 0 0.00 67 56 45.53 - - - GPR137C 0 genome.wustl.edu 37 14 53098946 53098946 + Missense_Mutation SNP T T C TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 14 53098946 53098946 T C SNP GPR137C ENST00000555622 human ensembl 69_37n +1 novel missense c.581 p.V194A 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region GPR137C HGNC ENSG00000180998 77 0 0.00 33 70 67.31 - - - HLA-B 0 genome.wustl.edu 37 6 31324601 31324602 + Frame_Shift_Ins INS - - A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 6 31324601 31324602 - A INS HLA-B ENST00000412585 human ensembl 69_37n -1 known frame_shift_ins c.207_206 p.E69fs 0.090:0.000 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2 - no_errors HLA-B HGNC ENSG00000234745 16 0 0.00 5 3 37.50 - - - MYEOV 0 genome.wustl.edu 37 11 69063518 69063519 + Frame_Shift_Ins INS - - A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 11 69063518 69063519 - A INS MYEOV ENST00000308946 human ensembl 69_37n +1 known frame_shift_ins c.601_602 p.V201fs 0.000:0.000 NULL NULL - no_errors MYEOV HGNC ENSG00000172927 32 0 0.00 38 25 39.68 - - - NEDD4L 0 genome.wustl.edu 37 18 56033400 56033400 + Missense_Mutation SNP T T A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 18 56033400 56033400 T A SNP NEDD4L ENST00000400345 human ensembl 69_37n +1 known missense c.2003 p.F668Y 1.000 superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom - no_errors NEDD4L HGNC ENSG00000049759 62 0 0.00 48 19 27.94 - - - NEURL4 0 genome.wustl.edu 37 17 7226882 7226882 + Missense_Mutation SNP C C G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 17 7226882 7226882 C G SNP NEURL4 ENST00000399464 human ensembl 69_37n -1 known missense c.2339 p.G780A 1.000 pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z - no_errors NEURL4 HGNC ENSG00000215041 26 0 0.00 1 6 85.71 - - - NXT2 0 genome.wustl.edu 37 X 108785738 108785738 + Missense_Mutation SNP C C G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 X 108785738 108785738 C G SNP NXT2 ENST00000218004 human ensembl 69_37n +1 known missense c.415 p.Q139E 1.000 pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk - no_errors NXT2 HGNC ENSG00000101888 249 0 0.00 213 112 34.25 - - - PALM2-AKAP2 0 genome.wustl.edu 37 9 112694275 112694275 + Missense_Mutation SNP T T A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 9 112694275 112694275 T A SNP PALM2-AKAP2 ENST00000374530 human ensembl 69_37n +1 known missense c.463 p.S155T 0.683 NULL pfam_Paralemmin,pfam_RII_binding_1 - no_errors PALM2-AKAP2 HGNC ENSG00000157654 169 0 0.00 220 31 12.25 - - - PCDHB12 0 genome.wustl.edu 37 5 140590170 140590170 + Missense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 5 140590170 140590170 C T SNP PCDHB12 ENST00000239450 human ensembl 69_37n +1 known missense c.1691 p.P564L 1.000 superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB12 HGNC ENSG00000120328 25 0 0.00 18 9 33.33 - - - PDE9A 0 genome.wustl.edu 37 21 44119099 44119099 + Frame_Shift_Del DEL T T - TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 21 44119099 44119099 T - DEL PDE9A ENST00000291539 human ensembl 69_37n +1 known frame_shift_del c.240 p.V81fs 0.086 NULL pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE9A HGNC ENSG00000160191 78 0 0.00 39 29 40.28 - - - PKN1 0 genome.wustl.edu 37 19 14569083 14569083 + Silent SNP C C A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 19 14569083 14569083 C A SNP PKN1 ENST00000342216 human ensembl 69_37n +1 known silent c.1333 p.R445 1.000 superfamily_C2_Ca/lipid-bd_dom_CaLB pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom - no_errors PKN1 HGNC ENSG00000123143 77 0 0.00 33 47 58.75 - - - PMEPA1 0 genome.wustl.edu 37 20 56228121 56228121 + Missense_Mutation SNP C C G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 20 56228121 56228121 C G SNP PMEPA1 ENST00000341744 human ensembl 69_37n -1 known missense c.286 p.E96Q 0.997 NULL NULL - no_errors PMEPA1 HGNC ENSG00000124225 8 0 0.00 7 5 41.67 - - - RGS7 0 genome.wustl.edu 37 1 241094016 241094016 + Splice_Site SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 1 241094016 241094016 C T SNP RGS7 ENST00000407727 human ensembl 69_37n -1 known splice_site c.385+1 e5+1 1.000 - - - no_errors RGS7 HGNC ENSG00000182901 505 0 0.00 346 182 34.47 - - - SEPT2 0 genome.wustl.edu 37 2 242276852 242276852 + Missense_Mutation SNP G G A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 2 242276852 242276852 G A SNP SEPT2 ENST00000360051 human ensembl 69_37n +1 known missense c.397 p.E133K 1.000 pfam_Cell_div_GTP-bd,pirsf_Septin pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2 - no_errors SEPT2 HGNC ENSG00000168385 482 0 0.00 262 233 47.07 - - - SLC13A3 0 genome.wustl.edu 37 20 45188713 45188713 + Missense_Mutation SNP T T C TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 20 45188713 45188713 T C SNP SLC13A3 ENST00000279027 human ensembl 69_37n -1 known missense c.1757 p.N586S 0.261 NULL pfam_Na/sul_symport,pfam_Cit_transptr-like_dom - no_errors SLC13A3 HGNC ENSG00000158296 183 0 0.00 104 56 34.78 - - - SLC22A15 0 genome.wustl.edu 37 1 116609327 116609327 + Nonsense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 1 116609327 116609327 C T SNP SLC22A15 ENST00000369503 human ensembl 69_37n +1 known nonsense c.1552 p.Q518* 0.994 NULL pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC22A15 HGNC ENSG00000163393 57 0 0.00 50 12 19.35 - - - SPANXN3 0 genome.wustl.edu 37 X 142596806 142596806 + Silent SNP G G A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 X 142596806 142596806 G A SNP SPANXN3 ENST00000370503 human ensembl 69_37n -1 known silent c.264 p.G88 0.002 pfam_SPANX_prot pfam_SPANX_prot - no_errors SPANXN3 HGNC ENSG00000189252 2755 2 0.07 2420 1853 43.19 - - - TEAD2 0 genome.wustl.edu 37 19 49850472 49850473 + Frame_Shift_Ins INS - - G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 19 49850472 49850473 - G INS TEAD2 ENST00000377214 human ensembl 69_37n -1 known frame_shift_ins c.893_892 p.H298fs 0.971:0.961 pfam_TEA/ATTS,pirsf_TEF pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS - no_errors TEAD2 HGNC ENSG00000074219 107 1 0.93 98 11 10.09 - - - THBS3 0 genome.wustl.edu 37 1 155169883 155169883 + Missense_Mutation SNP T T A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 1 155169883 155169883 T A SNP THBS3 ENST00000368378 human ensembl 69_37n -1 known missense c.1730 p.N577I 1.000 pfam_Thrombospondin_3-like_rpt pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom - no_errors THBS3 HGNC ENSG00000169231 71 0 0.00 46 41 47.13 - - - TIAF1 0 genome.wustl.edu 37 17 27401124 27401124 + Missense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 17 27401124 27401124 C T SNP TIAF1 ENST00000359450 human ensembl 69_37n -1 known missense c.94 p.E32K 0.000 NULL NULL - no_errors TIAF1 HGNC ENSG00000221995 82 0 0.00 69 49 41.53 - - - TIGD4 0 genome.wustl.edu 37 4 153690942 153690942 + Silent SNP C C G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 4 153690942 153690942 C G SNP TIGD4 ENST00000304337 human ensembl 69_37n -1 known silent c.1215 p.L405 0.002 NULL pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq - no_errors TIGD4 HGNC ENSG00000169989 238 0 0.00 127 111 46.64 - - - TMEM143 0 genome.wustl.edu 37 19 48845963 48845963 + Missense_Mutation SNP G G A TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 19 48845963 48845963 G A SNP TMEM143 ENST00000293261 human ensembl 69_37n -1 known missense c.799 p.P267S 1.000 pfam_DUF3754 pfam_DUF3754 - no_errors TMEM143 HGNC ENSG00000161558 55 0 0.00 21 18 46.15 - - - UBFD1 0 genome.wustl.edu 37 16 23573549 23573549 + Missense_Mutation SNP A A G TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 16 23573549 23573549 A G SNP UBFD1 ENST00000219638 human ensembl 69_37n +1 known missense c.1259 p.K420R 1.000 NULL pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup - no_errors UBFD1 HGNC ENSG00000103353 80 0 0.00 73 57 43.85 - - - ZNF419 0 genome.wustl.edu 37 19 58005412 58005412 + Missense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 19 58005412 58005412 C T SNP ZNF419 ENST00000424930 human ensembl 69_37n +1 known missense c.1490 p.S497F 0.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF419 HGNC ENSG00000105136 317 0 0.00 165 131 44.26 - - - ZNF48 0 genome.wustl.edu 37 16 30409119 30409119 + Missense_Mutation SNP C C T TCGA-A8-A09K-01A-11W-A019-09 TCGA-A8-A09K-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d8cd75f2-5ee5-4296-a781-a6a16ee94506 065ce36f-67f9-44fe-b58e-a37d74eb2a35 16 30409119 30409119 C T SNP ZNF48 ENST00000320159 human ensembl 69_37n +1 known missense c.548 p.S183F 0.001 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF48 HGNC ENSG00000180035 40 0 0.00 30 28 48.28 - - -