Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AXDND1 0 genome.wustl.edu 37 1 179399655 179399655 + Silent SNP A A G TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 1 179399655 179399655 A G SNP AXDND1 ENST00000367618 human ensembl 69_37n +1 known silent c.1401 p.K467 0.938 NULL pfam_Axonemal_dynein_light_chain - no_errors AXDND1 HGNC ENSG00000162779 156 0 0.00 192 148 43.40 - - - C9orf170 0 genome.wustl.edu 37 9 89771612 89771612 + Missense_Mutation SNP G G T TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 9 89771612 89771612 G T SNP C9orf170 ENST00000375941 human ensembl 69_37n +1 known missense c.293 p.R98L 0.001 NULL NULL - no_errors C9orf170 HGNC ENSG00000204446 211 0 0.00 26 109 80.74 - - - COL1A2 0 genome.wustl.edu 37 7 94052368 94052368 + Missense_Mutation SNP G G A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 7 94052368 94052368 G A SNP COL1A2 ENST00000297268 human ensembl 69_37n +1 known missense c.2503 p.G835S 1.000 NULL pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C - no_errors COL1A2 HGNC ENSG00000164692 121 0 0.00 11 47 81.03 - - - EMC2 0 genome.wustl.edu 37 8 109498777 109498777 + Missense_Mutation SNP C C G TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 8 109498777 109498777 C G SNP EMC2 ENST00000220853 human ensembl 69_37n +1 known missense c.844 p.L282V 1.000 NULL smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors EMC2 HGNC ENSG00000104412 162 1 0.61 92 15 14.02 - - - FAM227B 0 genome.wustl.edu 37 15 49880251 49880251 + Missense_Mutation SNP C C T TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 15 49880251 49880251 C T SNP FAM227B ENST00000299338 human ensembl 69_37n -1 known missense c.367 p.E123K 0.002 NULL NULL - no_errors FAM227B HGNC ENSG00000166262 515 0 0.00 201 113 35.99 - - - GANAB 0 genome.wustl.edu 37 11 62396766 62396766 + Silent SNP T T C TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 11 62396766 62396766 T C SNP GANAB ENST00000346178 human ensembl 69_37n -1 known silent c.1902 p.G634 1.000 pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd - no_errors GANAB HGNC ENSG00000089597 41 0 0.00 69 44 38.94 - - - GJB6 0 genome.wustl.edu 37 13 20797608 20797608 + Silent SNP C C A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 13 20797608 20797608 C A SNP GJB6 ENST00000241124 human ensembl 69_37n -1 known silent c.12 p.G4 0.000 pfam_Connexin_N pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin - no_errors GJB6 HGNC ENSG00000121742 164 0 0.00 135 32 19.16 - - - HS6ST2 0 genome.wustl.edu 37 X 131762771 131762771 + Missense_Mutation SNP A A C TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 X 131762771 131762771 A C SNP HS6ST2 ENST00000521489 human ensembl 69_37n -1 known missense c.1418 p.L473R 1.000 pfam_Sulfotransferase pfam_Sulfotransferase - no_errors HS6ST2 HGNC ENSG00000171004 310 0 0.00 43 140 76.50 - - - KCNQ2 0 genome.wustl.edu 37 20 62073861 62073861 + Silent SNP G G T TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 20 62073861 62073861 G T SNP KCNQ2 ENST00000354587 human ensembl 69_37n -1 known silent c.714 p.I238 0.997 pfam_Ion_trans_dom,prints_K_chnl pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl - no_errors KCNQ2 HGNC ENSG00000075043 63 0 0.00 56 39 41.05 - - - LPHN2 0 genome.wustl.edu 37 1 82445611 82445611 + Nonsense_Mutation SNP T T A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 1 82445611 82445611 T A SNP LPHN2 ENST00000370717 human ensembl 69_37n +1 known nonsense c.3068 p.L1023* 1.000 pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like - no_errors LPHN2 HGNC ENSG00000117114 182 0 0.00 13 41 74.55 - - - LRRC37A6P 0 genome.wustl.edu 37 10 27536596 27536596 + RNA SNP T T C TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 10 27536596 27536596 T C SNP LRRC37A6P ENST00000284414 human ensembl 69_37n -1 known rna NULL NULL 0.016 - - - no_errors LRRC37A6P HGNC ENSG00000230445 53 0 0.00 42 26 38.24 - - - MYNN 0 genome.wustl.edu 37 3 169492273 169492273 + Missense_Mutation SNP G G T TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 3 169492273 169492273 G T SNP MYNN ENST00000349841 human ensembl 69_37n +1 known missense c.190 p.D64Y 1.000 pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors MYNN HGNC ENSG00000085274 108 1 0.92 56 41 41.84 - - - NBEAL1 0 genome.wustl.edu 37 2 204045211 204045211 + Missense_Mutation SNP C C G TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 2 204045211 204045211 C G SNP NBEAL1 ENST00000449802 human ensembl 69_37n +1 known missense c.6484 p.P2162A 1.000 pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors NBEAL1 HGNC ENSG00000144426 71 0 0.00 33 22 40.00 - - - NINL 0 genome.wustl.edu 37 20 25493495 25493495 + Missense_Mutation SNP C C T TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 20 25493495 25493495 C T SNP NINL ENST00000278886 human ensembl 69_37n -1 known missense c.425 p.R142H 0.003 NULL pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2 - no_errors NINL HGNC ENSG00000101004 18 0 0.00 20 5 20.00 - - - PLA2G4F 0 genome.wustl.edu 37 15 42438328 42438328 + Missense_Mutation SNP C C A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 15 42438328 42438328 C A SNP PLA2G4F ENST00000397272 human ensembl 69_37n -1 known missense c.1537 p.A513S 1.000 pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom - no_errors PLA2G4F HGNC ENSG00000168907 31 0 0.00 21 6 22.22 - - - POLR3GL 0 genome.wustl.edu 37 1 145457308 145457308 + Silent SNP C C A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 1 145457308 145457308 C A SNP POLR3GL ENST00000369314 human ensembl 69_37n -1 known silent c.384 p.R128 1.000 pfam_RNA_pol_III_Rpc31 pfam_RNA_pol_III_Rpc31 - no_errors POLR3GL HGNC ENSG00000121851 101 0 0.00 166 43 20.57 - - - PRKDC 0 genome.wustl.edu 37 8 48840380 48840380 + Missense_Mutation SNP G G A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 8 48840380 48840380 G A SNP PRKDC ENST00000314191 human ensembl 69_37n -1 known missense c.2210 p.P737L 1.000 superfamily_ARM-type_fold pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors PRKDC HGNC ENSG00000253729 42 0 0.00 7 19 73.08 - - - RNF128 0 genome.wustl.edu 37 X 105937248 105937248 + Missense_Mutation SNP A A G TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 X 105937248 105937248 A G SNP RNF128 ENST00000324342 human ensembl 69_37n +1 known missense c.16 p.R6G 0.005 NULL pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF128 HGNC ENSG00000133135 313 0 0.00 35 113 76.35 - - - RNF219 0 genome.wustl.edu 37 13 79190282 79190282 + Missense_Mutation SNP G G C TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 13 79190282 79190282 G C SNP RNF219 ENST00000282003 human ensembl 69_37n -1 known missense c.1614 p.I538M 1.000 NULL pfscan_Znf_RING - no_errors RNF219 HGNC ENSG00000152193 287 1 0.35 48 112 70.00 - - - SLC28A2 0 genome.wustl.edu 37 15 45560544 45560544 + Missense_Mutation SNP G G A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 15 45560544 45560544 G A SNP SLC28A2 ENST00000347644 human ensembl 69_37n +1 known missense c.1336 p.E446K 0.891 pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac - no_errors SLC28A2 HGNC ENSG00000137860 96 0 0.00 85 71 45.51 - - - TRIM60 0 genome.wustl.edu 37 4 165961589 165961589 + Missense_Mutation SNP C C A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 4 165961589 165961589 C A SNP TRIM60 ENST00000341062 human ensembl 69_37n +1 known missense c.365 p.S122Y 0.032 pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin - no_errors TRIM60 HGNC ENSG00000176979 68 0 0.00 46 43 48.31 - - - WBSCR16 0 genome.wustl.edu 37 7 74482534 74482534 + Missense_Mutation SNP C C A TCGA-A8-A099-01A-11W-A019-09 TCGA-A8-A099-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1066cb38-e051-42fa-a8bc-20b659c17a13 f683d650-e338-4347-a0a3-b7e28cb096f8 7 74482534 74482534 C A SNP WBSCR16 ENST00000329959 human ensembl 69_37n -1 known missense c.526 p.V176L 1.000 pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens - no_errors WBSCR16 HGNC ENSG00000174374 23 0 0.00 39 16 29.09 - - -