Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANKRD30B 0 genome.wustl.edu 37 18 14852311 14852311 + Silent SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 18 14852311 14852311 G A SNP ANKRD30B ENST00000358984 human ensembl 69_37n +1 known silent c.4011 p.E1337 0.010 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD30B HGNC ENSG00000180777 50 0 0.00 31 5 13.89 - - - ANKRD30BL 0 genome.wustl.edu 37 2 133015374 133015374 + RNA SNP G G C TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 2 133015374 133015374 G C SNP ANKRD30BL ENST00000470729 human ensembl 69_37n -1 known rna NULL NULL 0.001 - - - no_errors ANKRD30BL HGNC ENSG00000163046 41 0 0.00 66 11 14.29 - - - CXCR3 0 genome.wustl.edu 37 X 70837002 70837002 + Missense_Mutation SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 X 70837002 70837002 G A SNP CXCR3 ENST00000373691 human ensembl 69_37n -1 known missense c.461 p.P154L 0.999 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt - no_errors CXCR3 HGNC ENSG00000186810 56 0 0.00 40 21 34.43 - - - DGKG 0 genome.wustl.edu 37 3 185879390 185879390 + Splice_Site SNP A A G TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 3 185879390 185879390 A G SNP DGKG ENST00000265022 human ensembl 69_37n -1 known splice_site c.2277+2 e23+2 1.000 - - - no_errors DGKG HGNC ENSG00000058866 50 0 0 34 12 25.53 - - - FCRL3 0 genome.wustl.edu 37 1 157666256 157666256 + RNA SNP T T C TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 1 157666256 157666256 T C SNP FCRL3 ENST00000473231 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors FCRL3 HGNC ENSG00000160856 8 0 0.00 3 10 76.92 - - - FER1L4 0 genome.wustl.edu 37 20 34171140 34171140 + RNA SNP T T C TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 20 34171140 34171140 T C SNP FER1L4 ENST00000430275 human ensembl 69_37n -1 known rna NULL NULL 0.969 - - - no_errors FER1L4 HGNC ENSG00000088340 32 0 0.00 29 4 12.12 - - - FLJ37453 0 genome.wustl.edu 37 1 16162471 16162471 + RNA SNP C C A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 1 16162471 16162471 C A SNP FLJ37453 ENST00000317122 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors RP11-169K16.9 Clone_based_vega_gene ENSG00000179743 10 0 0.00 4 6 60.00 - - - FOXI1 0 genome.wustl.edu 37 5 169535084 169535084 + Silent SNP C C T TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 5 169535084 169535084 C T SNP FOXI1 ENST00000306268 human ensembl 69_37n +1 known silent c.606 p.N202 1.000 pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXI1 HGNC ENSG00000168269 17 0 0.00 6 4 40.00 - - - HPS4 0 genome.wustl.edu 37 22 26868810 26868810 + Silent SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 22 26868810 26868810 G A SNP HPS4 ENST00000398141 human ensembl 69_37n -1 known silent c.357 p.S119 0.088 NULL NULL - no_errors HPS4 HGNC ENSG00000100099 39 0 0.00 26 7 21.21 - - - IGHA2 0 genome.wustl.edu 37 14 106053932 106053932 + Missense_Mutation SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 14 106053932 106053932 G A SNP IGHA2 ENST00000390539 human ensembl 69_37n -1 known missense c.587 p.P196L 0.543 smart_Ig_C1-set,pfscan_Ig-like pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like - no_start_codon IGHA2 HGNC ENSG00000211890 57 0 0.00 109 19 14.84 - - - KRT16P1 0 genome.wustl.edu 37 17 18343286 18343286 + RNA SNP C C T TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 17 18343286 18343286 C T SNP KRT16P1 ENST00000584135 human ensembl 69_37n +1 known rna NULL NULL 0.002 - - - no_errors KRT16P1 HGNC ENSG00000214856 15 0 0.00 16 5 23.81 - - - KRT4 0 genome.wustl.edu 37 12 53207582 53207582 + Silent SNP A A G TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 12 53207582 53207582 A G SNP KRT4 ENST00000293774 human ensembl 69_37n -1 known silent c.483 p.G161 0.946 NULL pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I - no_errors KRT4 HGNC ENSG00000170477 33 0 0.00 32 9 21.95 - - - LMCD1 0 genome.wustl.edu 37 3 8609232 8609232 + Missense_Mutation SNP T T C TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 3 8609232 8609232 T C SNP LMCD1 ENST00000157600 human ensembl 69_37n +1 known missense c.1046 p.V349A 0.998 pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM - no_errors LMCD1 HGNC ENSG00000071282 47 0 0.00 25 8 23.53 - - - MED1 0 genome.wustl.edu 37 17 37584005 37584005 + Missense_Mutation SNP C C T TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 17 37584005 37584005 C T SNP MED1 ENST00000300651 human ensembl 69_37n -1 known missense c.688 p.D230N 1.000 pfam_Mediator_Med1_met/fun pfam_Mediator_Med1_met/fun - no_errors MED1 HGNC ENSG00000125686 38 0 0.00 25 4 13.79 - - - OR6K6 0 genome.wustl.edu 37 1 158724608 158724608 + Missense_Mutation SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 1 158724608 158724608 G A SNP OR6K6 ENST00000368144 human ensembl 69_37n +1 known missense c.3 p.M1I 0.000 NULL pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR6K6 HGNC ENSG00000180433 32 0 0.00 67 8 10.67 - - - PBX2P1 0 genome.wustl.edu 37 3 142897015 142897015 + RNA SNP C C T TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 3 142897015 142897015 C T SNP PBX2P1 ENST00000560287 human ensembl 69_37n +1 known rna NULL NULL 0.987 - - - no_errors PBX2P1 HGNC ENSG00000244171 50 0 0.00 41 14 25.00 - - - SLC39A9 0 genome.wustl.edu 37 14 69920016 69920016 + Silent SNP C C T TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 14 69920016 69920016 C T SNP SLC39A9 ENST00000555840 human ensembl 69_37n +1 known silent c.462 p.V154 1.000 pfam_ZIP pfam_ZIP - no_errors SLC39A9 HGNC ENSG00000029364 66 0 0.00 47 35 42.17 - - - TBC1D3P1-DHX40P1 0 genome.wustl.edu 37 17 58085530 58085530 + RNA SNP T T C TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 17 58085530 58085530 T C SNP TBC1D3P1-DHX40P1 ENST00000407042 human ensembl 69_37n -1 known rna NULL NULL 0.068 - - - no_errors TBC1D3P1-DHX40P1 HGNC ENSG00000267104 20 0 0.00 26 5 16.13 - - - ZNF275 0 genome.wustl.edu 37 X 152613219 152613219 + Missense_Mutation SNP G G A TCGA-A2-A3KD-01A-12D-A20S-09 TCGA-A2-A3KD-10A-01D-A20S-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 37ddccc5-9ff1-4733-a5a9-595bba074e54 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 X 152613219 152613219 G A SNP ZNF275 ENST00000440091 human ensembl 69_37n +1 known missense c.1166 p.R389H 0.797 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF275 HGNC ENSG00000063587 67 0 0.00 59 18 23.38 - - -