Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	broad.mit.edu	37	1	2560819	2560821	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MMEL1-90	NM_033467	exon2	c.103_105del	p.35_35del	GGTCACCAGCAGC	.	311	10	6	0	.	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305201	6305201	+	Missense_Mutation	SNP	A	A	C	rs188463518		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HES3-514	NM_001024598	exon4	c.A195C	p.Q65H	CGAGCAACCGTCG	.	16	16	0	0	A|0.967;C|0.033	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	7	7	0	0	A|0.047;C|0.953	0	0	0	0	0
GPR157	80045	hgsc.bcm.edu	37	1	9188967	9188967	+	Silent	SNP	G	G	C	rs77649572	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GPR157-514	NM_024980	exon1	c.C120G	p.P40P	CAGGTCGGGCCAC	.	34	31	2	0	G|0.920;C|0.080	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	9	9	0	0	T|0.001;C|0.999	0	0	0	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12262126	12262126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TNFRSF1B-1085	NM_001066	exon9	c.G1003T	p.A335S	AGCTCGGCCAGTG	.	187	11	37	1	.	0	0	0	0	0
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	18691917	18691917	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IGSF21-156	NM_032880	exon6	c.C741T	p.S247S	CCCCTCCCGTGGC	.	328	30	171	0	.	0	0	0	0	0
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22055060	22055060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	USP48-659	NM_001032730	exon11	c.C1453G	p.L485V	CTTACAGACCAGC	.	152	40	100	0	.	0	0	0	0	0
FUCA1	2517	bcgsc.ca	37	1	24180962	24180962	+	Missense_Mutation	SNP	T	T	C	rs13551	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FUCA1-153	NM_000147	exon5	c.A857G	p.Q286R	AAGCTCTGTGGCT	.	205	8	144	1	T|0.737;C|0.263	0	0	0	0	0
FAM46B	115572	hgsc.bcm.edu	37	1	27339103	27339103	+	Missense_Mutation	SNP	G	G	T	rs4970471		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FAM46B-90	NM_052943	exon1	c.C59A	p.T20K	GCAGCCGTCCCCA	.	6	6	0	0	G|0.670;T|0.330	0	0	0	0	0
UTP11L	51118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38482069	38482069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	UTP11L-90	NM_016037	exon2	c.G102T	p.K34N	GAAAAAGAAAGAT	.	67	16	41	0	.	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu	37	1	41976389	41976389	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HIVEP3-157	NM_024503	exon9	c.G6954A	p.P2318P	CTGGGGCGGCCGG	.	9	9	0	0	.	0	0	0	0	0
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97272469	97272469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PTBP2-90	NM_021190	exon11	c.G1126A	p.D376N	AAGAAAGACAGCG	.	99	19	96	0	.	0	0	0	0	0
TRIM33	51592	hgsc.bcm.edu	37	1	115053471	115053471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TRIM33-1351	NM_033020	exon1	c.A227C	p.Q76P	GCAGCCTGGGCCG	.	15	7	0	0	.	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	9	5	0	0	G|0.680;C|0.320	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	8	4	0	0	G|0.500;A|0.500	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	10	10	0	0	T|0.073;G|0.921	0	0	0	0	0
LCE1E	353135	bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	211	47	127	6	A|0.995;G|0.005	0	0	0	0	0
LCE1E	353135	ucsc.edu	37	1	152760096	152760096	+	Silent	SNP	A	A	T	rs115864544	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LCE1E-90	NM_178353	exon2	c.A321T	p.G107G	CTGTGGAGGGGGC	.	237	46	179	11	A|0.901;T|0.099	0	0	0	0	0
DENND4B	9909	hgsc.bcm.edu;bcgsc.ca	37	1	153907278	153907278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DENND4B-69	NM_014856	exon18	c.G2731C	p.E911Q	CCTGCTCCTGCTG	.	129	9	46	0	.	0	0	0	0	0
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158324185	158324185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CD1E-93	NM_001185107	exon2	c.C77A	p.S26Y	TACAATCCTATCA	.	94	21	89	0	.	0	0	0	0	0
OR6K6	128371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158725430	158725430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	OR6K6-69	NM_001005184	exon1	c.C825A	p.F275L	TGTGTTCTTGCTA	.	403	92	278	0	.	0	0	0	0	0
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159021731	159021731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IFI16-91	NM_001206567	exon9	c.A1760T	p.E587V	TCCTGGAGGTATA	.	147	35	126	0	.	0	0	0	0	0
FCER1A	2205	bcgsc.ca	37	1	159277689	159277689	+	Missense_Mutation	SNP	C	C	A	rs41264475	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FCER1A-524	NM_002001	exon6	c.C741A	p.N247K	TCTGAACCCACAT	.	54	4	58	0	C|0.991;A|0.009	0	0	0	0	0
COPA	1314	broad.mit.edu	37	1	160277011	160277011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	COPA-92	NM_004371	exon14	c.G1244T	p.G415V	GTCAGGCCTGAGG	.	167	9	93	1	.	0	0	0	0	0
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201182038	201182038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IGFN1-71	NM_001164586	exon12	c.G8017T	p.G2673C	TTTAAGGGTGGGG	.	163	38	137	0	.	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	60	11	1	0	T|0.721;G|0.279	0	0	0	0	0
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220369717	220369717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RAB3GAP2-90	NM_012414	exon10	c.G835C	p.D279H	TTTGATCAAAGGG	.	85	23	94	0	.	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IBA57-90	NM_001010867	exon2	c.C390A	p.S130R	TGACAGCTCGGTG	.	162	21	29	1	.	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233372603	233372603	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PCNXL2-91	NM_014801	exon9	c.G2346T	p.S782S	GGTTTCCGACTGG	.	132	12	100	0	.	0	0	0	0	0
HEATR1	55127	bcgsc.ca	37	1	236758887	236758887	+	Missense_Mutation	SNP	T	T	C	rs2794751	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HEATR1-93	NM_018072	exon8	c.A1043G	p.H348R	ATGTAATGCAGAA	.	274	11	194	1	T|0.400;C|0.600	0	0	0	0	0
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902810	236902810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ACTN2-95	NM_001103	exon10	c.C1085T	p.P362L	TCATGCCCTCCGA	.	231	63	107	0	.	0	0	0	0	0
OR2G6	391211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248685138	248685138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	OR2G6-71	NM_001013355	exon1	c.G191T	p.S64I	TCCTCAGCAACCT	.	210	49	183	1	.	0	0	0	0	0
AKR1CL1	340811	bcgsc.ca	37	10	5202076	5202076	+	RNA	SNP	G	G	A	rs148010840	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	AKR1CL1-90	.	.	.	.	CTAAGGGCTCACC	.	207	10	280	2	G|0.985;A|0.015	0	0	0	0	0
DHTKD1	55526	bcgsc.ca	37	10	12143105	12143105	+	Missense_Mutation	SNP	C	C	G	rs2062988	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DHTKD1-515	NM_018706	exon10	c.C1821G	p.I607M	TGCAATCGTGGTT	.	154	7	137	1	C|0.263;G|0.737	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29777558	29777558	+	Silent	SNP	G	G	A	rs61737742	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SVIL-96	NM_021738	exon23	c.C4320T	p.Y1440Y	CCTCTTGTAGGGC	.	82	7	51	0	G|0.911;A|0.089	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000193	47000193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GPRIN2-90	NM_014696	exon3	c.G1313A	p.R438Q	CACTGCGGGCTGT	.	20	5	3	0	.	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu	37	10	77158945	77158945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF503-91	NM_032772	exon2	c.C1503A	p.Y501X	GTAGGGGTAGAGG	.	67	28	19	0	.	0	0	0	0	0
CYP2C19	1557	ucsc.edu	37	10	96541616	96541616	+	Silent	SNP	G	G	A	rs4244285	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CYP2C19-95	NM_000769	exon5	c.G681A	p.P227P	TTTCCCGGGAACC	.	38	4	91	3	A|0.170;G|0.830	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	15	15	0	0	A|0.009;G|0.991	0	0	0	0	0
TRUB1	142940	bcgsc.ca	37	10	116719543	116719543	+	Missense_Mutation	SNP	G	G	A	rs7099565	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TRUB1-90	NM_139169	exon4	c.G500A	p.R167K	CGGGGAGGGTAAC	.	140	6	129	0	G|0.500;A|0.500	0	0	0	0	0
GFRA1	2674	bcgsc.ca	37	10	117884950	117884950	+	Silent	SNP	G	G	A	rs2245020	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GFRA1-93	NM_005264	exon6	c.C552T	p.N184N	GACATCGTTGGAC	.	318	10	194	1	G|0.520;A|0.480	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608465	608465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PHRF1-22	NM_020901	exon14	c.G3006C	p.K1002N	CAGGAAGAAGGCC	.	190	62	66	0	.	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1267194	1267194	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_002458	exon31	c.G9084C	p.T3028T	CAGCACGGCCACC	.	347	6	215	1	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651157	1651157	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	KRTAP5-5-23	NM_001001480	exon1	c.87delA	p.G29fs	CTGTGGAGGCTGT	.	137	10	11	0	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651159	1651169	+	Frame_Shift_Del	DEL	GCTGTGGCTCT	GCTGTGGCTCT	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	KRTAP5-5-23	NM_001001480	exon1	c.89_99del	p.30_33del	GTGGAGGCTGTGG	.	134	9	10	0	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	33	28	1	0	C|0.602;T|0.398	0	0	0	0	0
OR52R1	119695	bcgsc.ca	37	11	4825225	4825225	+	Missense_Mutation	SNP	A	A	G	rs7941731	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	OR52R1-69	NM_001005177	exon1	c.T386C	p.I129T	AAGCAGATAGCCA	.	136	8	116	0	A|0.629;G|0.371	0	0	0	0	0
NLRP14	338323	bcgsc.ca	37	11	7079038	7079038	+	Missense_Mutation	SNP	G	G	A	rs10839708	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NLRP14-295	NM_176822	exon7	c.G2422A	p.E808K	TTGTGTGAGGCCT	.	153	12	190	2	G|0.472;A|0.528	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	7	7	0	0	C|0.748;A|0.252	0	0	0	0	0
OR5AR1	219493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56431814	56431814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	OR5AR1-68	NM_001004730	exon1	c.A653G	p.Y218C	TCTCCTATACCTT	.	142	49	121	1	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	6	6	1	0	G|0.005;C|0.995	0	0	0	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249275	71249275	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	KRTAP5-8-44	NM_021046	exon1	c.G174A	p.G58G	CAAGGGGGGCCGT	.	145	15	95	0	.	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118374844	118374844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MLL-1255	NM_001197104	exon27	c.G8237C	p.R2746T	CAAAAAGAAATGG	.	56	23	82	0	.	0	0	0	0	0
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ATN1-139	NM_001007026	exon5	c.G1476A	p.Q492Q	GCAGCAGCAGCAG	.	310	38	82	1	.	0	0	0	0	0
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	307	25	88	0	G|0.999;A|0.001	0	0	0	0	0
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63131354	63131354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PPM1H-637	NM_020700	exon5	c.C882G	p.I294M	ATTTCTGATGATT	.	159	32	103	0	.	0	0	0	0	0
ACSS3	79611	hgsc.bcm.edu	37	12	81472014	81472014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ACSS3-71	NM_024560	exon1	c.G115A	p.V39I	TTAGTGGTCCCGG	.	39	25	0	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	8	8	0	0	A|0.273;G|0.727	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TMEM119-69	NM_181724	exon2	c.C48G	p.L16L	CCCCAGGAGCAGC	.	8	5	2	0	G|0.822;C|0.178	0	0	0	0	0
IQCD	115811	broad.mit.edu	37	12	113633505	113633505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IQCD-91	NM_138451	exon3	c.G919T	p.A307S	ATAGGGCCTGGAT	.	167	6	111	0	.	0	0	0	0	0
CCDC168	643677	bcgsc.ca	37	13	103392709	103392709	+	Missense_Mutation	SNP	A	A	T	rs79592880		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001146197	exon4	c.T10338A	p.D3446E	TAGCTGATCTGCA	.	61	5	119	0	A|0.921;T|0.079	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	5	5	0	0	C|0.372;T|0.628	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	64	3	8	0	.	0	0	0	0	0
ACIN1	22985	bcgsc.ca	37	14	23549319	23549319	+	Missense_Mutation	SNP	A	A	G	rs1885097	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ACIN1-156	NM_001164814	exon6	c.T1399C	p.S467P	GCTGAGATACTAA	.	168	7	126	1	A|0.565;G|0.435	0	0	0	0	0
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IL25-91	NM_022789	exon2	c.502_503del	p.168_168del	TTAGCTTGTGTGT	.	449	8	222	0	.	0	0	0	0	0
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91647656	91647656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C14orf159-92	NM_001102368	exon8	c.C857A	p.P286H	AAGATCCTCTGCA	.	78	22	57	0	.	0	0	0	0	0
ATG2B	55102	bcgsc.ca	37	14	96795839	96795839	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ATG2B-93	NM_018036	exon12	c.T1863C	p.V621V	AGGAGGAACAGAA	.	59	4	68	1	.	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	17	15	0	0	T|0.478;C|0.522	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	EXOC3L4-23	NM_001077594	exon2	c.A669G	p.E223E	GGAGGAAGCCCAC	.	6	5	0	0	A|0.486;G|0.514	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	9	9	0	0	G|0.327;T|0.673	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414374	105414374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	AHNAK2-47	NM_138420	exon7	c.G7414C	p.A2472P	TGTCCGCCACAGA	.	172	60	129	0	.	0	0	0	0	0
TMEM121	80757	hgsc.bcm.edu	37	14	105996119	105996119	+	Silent	SNP	C	C	T	rs79647036	byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TMEM121-90	NM_025268	exon2	c.C948T	p.P316P	TGACCCCCTGGAC	.	4	4	0	0	C|0.912;T|0.088	0	0	0	0	0
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28510816	28510816	+	Silent	SNP	G	G	A	rs139612007		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HERC2-234	NM_004667	exon14	c.C1818T	p.I606I	CACATCGATGACC	.	255	106	182	1	G|0.999;A|0.001	0	0	0	0	0
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41853473	41853473	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TYRO3-1388	NM_006293	exon2	c.C273T	p.I91I	GTACATCCCAGTC	.	153	65	88	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	11	11	0	0	A|0.226;C|0.774	0	0	0	0	0
ST20	400410	bcgsc.ca	37	15	80191343	80191343	+	Missense_Mutation	SNP	G	G	A	rs7257	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ST20-68	NM_001199757	exon3	c.C170T	p.P57L	CAATATGGAGTGT	.	207	7	256	1	G|0.590;A|0.410	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	16	9	0	0	C|0.615;G|0.385	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	17	16	0	0	T|0.007;C|0.993	0	0	0	0	0
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2136869	2136869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TSC2-1908	NM_000548	exon38	c.C4986G	p.I1662M	CACCATCAAGGTG	.	254	12	69	0	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	21	17	0	0	G|0.570;T|0.430	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	399	13	108	0	G|0.997;A|0.003	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	392	14	104	0	G|0.997;A|0.003	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19451450	19451450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TMC5-91	NM_001105249	exon3	c.G90T	p.L30F	GTATTTGAAAACT	.	134	37	73	0	.	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19488768	19488768	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TMC5-91	NM_001105249	exon13	c.C2097G	p.I699M	AAACATCTTTTTG	.	211	50	152	0	.	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GGA2-91	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	6	5	0	0	G|0.500;C|0.500	0	0	0	0	0
CDH5	1003	broad.mit.edu	37	16	66420931	66420931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CDH5-525	NM_001795	exon3	c.G430A	p.V144M	CATGACGTGAACG	.	292	6	234	1	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	23	18	2	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	23	0	2	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	19	15	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	21	15	0	0	.	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	7	4	0	0	C|0.846;T|0.154	0	0	0	0	0
RILP	83547	hgsc.bcm.edu	37	17	1553003	1553003	+	Silent	SNP	G	G	T	rs9896488		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RILP-91	NM_031430	exon1	c.C96A	p.A32A	GGCCCCGGCTAGA	.	31	27	0	0	G|0.921;T|0.079	0	0	0	0	0
PLD2	5338	bcgsc.ca	37	17	4718776	4718776	+	Silent	SNP	G	G	A	rs1132448	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PLD2-291	NM_001243108	exon13	c.G1179A	p.E393E	GGAGGAGGGTGTC	.	382	13	209	2	G|0.370;A|0.630	0	0	0	0	0
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7385476	7385476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001102614	exon2	c.C173T	p.S58F	CCCTTTCTCATAT	.	220	43	93	0	.	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18024266	18024266	+	Missense_Mutation	SNP	T	T	G	rs2955367	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MYO15A-97	NM_016239	exon2	c.T2152G	p.W718G	GCCAGCTGGTGGG	.	8	8	0	0	T|0.570;G|0.430	0	0	0	0	0
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	103	15	11	0	.	0	0	0	0	0
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34073260	34073260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GAS2L2-227	NM_139285	exon6	c.C1256G	p.S419C	ACCCAAGATGTGG	.	120	57	88	0	.	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ASB16-227	NM_080863	exon3	c.A881G	p.N294S	GTGCCAACGGCTG	.	5	4	0	0	A|0.590;G|0.410	0	0	0	0	0
SDK2	54549	broad.mit.edu	37	17	71503636	71503636	+	Silent	SNP	T	T	C	rs9895895	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SDK2-24	NM_001144952	exon2	c.A165G	p.P55P	CTCCAGTGGCCAG	.	105	4	123	1	T|0.439;C|0.561	0	0	0	0	0
SLC38A10	124565	bcgsc.ca	37	17	79219452	79219452	+	Silent	SNP	G	G	C	rs59820101	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SLC38A10-70	NM_001037984	exon16	c.C3264G	p.A1088A	ATCCAGGGCGCCA	.	313	12	57	0	G|0.963;C|0.037	0	0	0	0	0
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3079307	3079307	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MYOM1-94	NM_003803	exon34	c.G4518A	p.K1506K	CCCGGTCTTAACT	.	131	26	125	0	.	0	0	0	0	0
GATA6	2627	hgsc.bcm.edu;broad.mit.edu	37	18	19780774	19780774	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GATA6-514	NM_005257	exon7	c.G1776C	p.L592L	CGCCCTGGCCCTG	.	93	15	18	0	.	0	0	0	0	0
PIAS2	9063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44435530	44435530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PIAS2-662	NM_173206	exon4	c.G633T	p.L211F	TCACCTCAACTGA	.	120	12	106	0	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	16	16	0	0	A|0.114;G|0.886	0	0	0	0	0
MIDN	90007	hgsc.bcm.edu	37	19	1250397	1250397	+	Silent	SNP	C	C	T	rs3746107	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MIDN-90	NM_177401	exon2	c.C102T	p.A34A	CCTCGCCATCCAC	.	55	25	0	0	C|0.846;T|0.154	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	16	7	0	0	G|0.749;A|0.251	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	19	9	0	0	T|0.403;C|0.597	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TCF3-721	NM_003200	exon15	c.C1293T	p.G431G	CATGGGGCCGGTG	.	19	10	0	0	G|0.903;A|0.097	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TCF3-721	NM_003200	exon15	c.G1291A	p.G431S	TGGGGCCGGTGAA	.	20	11	0	0	C|0.901;T|0.099	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	14	6	0	0	A|0.591;G|0.409	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	24	17	1	0	C|0.752;G|0.248	0	0	0	0	0
FEM1A	55527	hgsc.bcm.edu	37	19	4792049	4792049	+	Silent	SNP	G	G	A	rs12608548		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FEM1A-90	NM_018708	exon1	c.G183A	p.V61V	CCTGGTGGACCGG	.	7	4	0	0	G|0.983;A|0.017	0	0	0	0	0
NRTN	4902	hgsc.bcm.edu	37	19	5828125	5828125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NRTN-90	NM_004558	exon2	c.G535T	p.A179S	CTGGACGCGCACA	.	36	20	0	0	.	0	0	0	0	0
MUC16	94025	broad.mit.edu;bcgsc.ca	37	19	9056461	9056461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MUC16-566	NM_024690	exon3	c.C30985T	p.P10329S	GCACAGGAGTGGA	.	248	8	139	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9090327	9090327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MUC16-566	NM_024690	exon1	c.C1488A	p.S496R	AGCTGTGCTGGAA	.	162	40	116	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CACNA1A-67	NM_001127221	exon19	c.G2754C	p.E918D	CTCGCCCTCCCAG	.	15	7	0	0	C|0.363;G|0.637	0	0	0	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	21	13	0	0	C|0.671;A|0.329	0	0	0	0	0
IGFL1	374918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46733364	46733364	+	Splice_Site	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_198541	exon2	c.26-1G>C	.	CCCACAGCTGTCT	.	110	39	71	0	.	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	12	5	0	0	C|0.254;G|0.746	0	0	0	0	0
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49637077	49637077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PPFIA3-226	NM_003660	exon10	c.G1186A	p.E396K	AATTTTGAGGAGC	.	475	134	159	0	.	0	0	0	0	0
SIGLEC12	89858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003536	52003536	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SIGLEC12-96	NM_053003	exon2	c.C446G	p.S149X	TATCTTGACAGTA	.	253	58	188	0	.	0	0	0	0	0
LILRB4	11006	bcgsc.ca	37	19	55175009	55175009	+	Missense_Mutation	SNP	G	G	T	rs11540761	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LILRB4-93	NM_006847	exon2	c.G54T	p.R18S	CCCCAGGACCCAC	.	225	10	191	1	G|0.810;T|0.190	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	21	10	0	0	A|0.808;G|0.192	0	0	0	0	0
DNAAF3	352909	hgsc.bcm.edu	37	19	55672055	55672055	+	Missense_Mutation	SNP	A	A	G	rs890871	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001256714	exon9	c.T1205C	p.L402P	TCCTCCAGGTCCC	.	44	15	1	0	A|0.920;G|0.080	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	120	1	72	0	.	0	0	0	0	0
SSC5D	284297	broad.mit.edu	37	19	56030009	56030009	+	Missense_Mutation	SNP	C	C	T	rs925878	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001144950	exon14	c.C4366T	p.P1456S	CTTGACCCCCTCA	.	47	3	33	0	C|0.808;T|0.192	0	0	0	0	0
ZNF444	55311	hgsc.bcm.edu	37	19	56671447	56671447	+	Silent	SNP	C	C	T	rs79199638	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF444-90	NM_018337	exon5	c.C861T	p.F287F	GGGCTTCGGGCGC	.	14	8	0	0	C|0.915;T|0.085	0	0	0	0	0
ZNF470	388566	bcgsc.ca	37	19	57088558	57088558	+	Missense_Mutation	SNP	A	A	G	rs3752179	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF470-92	NM_001001668	exon6	c.A761G	p.K254R	GAGAGAAACCCTA	.	82	4	68	0	A|0.968;G|0.032	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	82	8	87	0	G|0.500;T|0.500	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	80	9	84	0	C|0.500;T|0.500	0	0	0	0	0
ZSCAN18	65982	hgsc.bcm.edu	37	19	58596077	58596077	+	Missense_Mutation	SNP	G	G	C	rs201438629		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZSCAN18-90	NM_001145542	exon7	c.C1676G	p.P559R	GGTGCGGGGGGAG	.	24	12	1	0	G|0.998;C|0.002	0	0	0	0	0
CLIP4	79745	bcgsc.ca	37	2	29356567	29356567	+	Silent	SNP	G	G	C	rs17749904	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CLIP4-91	NM_024692	exon5	c.G414C	p.L138L	TGACCTGGGAGCA	.	114	6	100	0	G|0.838;C|0.162	0	0	0	0	0
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31428282	31428282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001145122	exon2	c.G32T	p.W11L	AGCTTCCATCTGC	.	279	96	245	0	.	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu	37	2	36583461	36583461	+	Missense_Mutation	SNP	G	G	T	rs3821169		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CRIM1-118	NM_016441	exon1	c.G26T	p.G9V	ACAGGGGGTTGGC	.	66	54	0	0	G|0.927;T|0.073	0	0	0	0	0
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	38800509	38800509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HNRPLL-91	NM_138394	exon8	c.C935A	p.P312H	AGTTCAGGTGTAT	.	117	36	113	0	.	0	0	0	0	0
LOC728819	0	bcgsc.ca	37	2	43903066	43903066	+	Silent	SNP	A	A	G	rs3828297	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001101330	exon1	c.T396C	p.G132G	GTTGTCACCATAC	.	282	8	245	1	A|0.440;G|0.560	0	0	0	0	0
TMEM247	388946	ucsc.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	305	41	119	5	G|1.000;|0.000	0	0	0	0	0
C2orf73	129852	bcgsc.ca	37	2	54562012	54562012	+	Missense_Mutation	SNP	C	C	A	rs55714450	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001100396	exon2	c.C85A	p.H29N	ATTAAACACGAAG	.	168	11	221	2	C|0.747;A|0.253	0	0	0	0	0
TLX2	3196	hgsc.bcm.edu	37	2	74743139	74743139	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TLX2-90	NM_016170	exon3	c.C678T	p.R226R	GCACCGCGCGGGC	.	5	5	0	0	.	0	0	0	0	0
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96962720	96962720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SNRNP200-162	NM_014014	exon12	c.A1466G	p.Y489C	GCACGGTAGAGCT	.	277	87	169	1	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104662	168104662	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	XIRP2-104	NM_152381	exon9	c.C6760T	p.L2254L	GACTTTCTAATGA	.	163	52	268	0	.	0	0	0	0	0
TMEM194B	100131211	hgsc.bcm.edu	37	2	191399378	191399378	+	Missense_Mutation	SNP	C	C	G	rs13412879		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001142645	exon1	c.G4C	p.G2R	GCGGCCCCATTTC	.	6	4	0	0	C|0.836;G|0.164	0	0	0	0	0
MARS2	92935	broad.mit.edu	37	2	198570807	198570807	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MARS2-92	NM_138395	exon1	c.G678T	p.L226L	GTGGCTGCGGGGC	.	87	4	66	1	.	0	0	0	0	0
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201440158	201440158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SGOL2-94	NM_001160033	exon8	c.C3749T	p.S1250F	TCCTTTCTATTTT	.	109	32	163	0	.	0	0	0	0	0
SLC52A3	113278	bcgsc.ca	37	20	746098	746098	+	Silent	SNP	G	G	A	rs3746808	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_033409	exon2	c.C321T	p.A107A	CAAGAAGGCGATG	.	186	7	227	0	G|0.754;A|0.246	0	0	0	0	0
SIRPB1	10326	bcgsc.ca	37	20	1552457	1552457	+	Silent	SNP	G	G	A	rs16995332	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SIRPB1-91	NM_006065	exon3	c.C660T	p.D220D	GTGAACGTCCCCA	.	537	13	516	3	G|0.897;A|0.103	0	0	0	0	0
GPCPD1	56261	bcgsc.ca	37	20	5556512	5556512	+	Missense_Mutation	SNP	G	G	A	rs2273373	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GPCPD1-90	NM_019593	exon9	c.C818T	p.T273I	GGAAGAGTAAGAA	.	177	6	271	1	G|0.899;A|0.101	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23016970	23016970	+	Missense_Mutation	SNP	T	T	G	rs3746726	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SSTR4-522	NM_001052	exon1	c.T850G	p.F284V	AACCTCTTCGTGA	.	94	7	127	2	T|0.674;G|0.326	0	0	0	0	0
FAM182A	284800	bcgsc.ca	37	20	26061967	26061967	+	RNA	SNP	G	G	T	rs200610416	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	.	.	.	.	CAGTCGGCATCGC	.	202	37	162	5	G|0.993;T|0.007	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FRG1B-22	.	.	.	.	GGGAAAATGGCTT	.	722	22	705	9	.	0	0	0	0	0
SRSF6	6431	broad.mit.edu	37	20	42086696	42086696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SRSF6-289	NM_006275	exon1	c.G23T	p.R8L	TAGGACGCCTGAG	.	169	7	57	1	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	5	5	0	0	C|0.999;T|0.001	0	0	0	0	0
EEF1A2	1917	hgsc.bcm.edu	37	20	62119708	62119708	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	EEF1A2-90	NM_001958	exon8	c.C1335T	p.S445S	GCCGCCGCTCTTC	.	22	8	2	0	.	0	0	0	0	0
SRMS	6725	bcgsc.ca	37	20	62173562	62173562	+	Silent	SNP	G	G	T	rs56130722	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SRMS-521	NM_080823	exon5	c.C900A	p.I300I	CGTGACGATGTAC	.	239	10	118	1	G|0.767;T|0.233	0	0	0	0	0
RTEL1	51750	broad.mit.edu	37	20	62321687	62321687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RTEL1-44	NM_032957	exon26	c.G2378T	p.R793L	GTGTGCGTGGAGA	.	39	3	58	0	.	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	25	21	1	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	27	23	1	0	G|0.803;A|0.197	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	.	.	.	.	GCCCCCCTGCTGC	.	108	10	23	0	.	0	0	0	0	0
GNB1L	54584	broad.mit.edu	37	22	19794180	19794180	+	Splice_Site	SNP	A	A	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GNB1L-290	NM_053004	exon7	c.516+2T>G	.	GGCCTTACCTGCC	.	184	34	52	1	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	6	6	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	10	10	0	0	G|0.826;C|0.174	0	0	0	0	0
RASL10A	10633	hgsc.bcm.edu	37	22	29711161	29711161	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RASL10A-659	NM_006477	exon1	c.G75T	p.L25L	ACCGAACAGGAAC	.	17	7	0	0	.	0	0	0	0	0
SH3BP1	23616	hgsc.bcm.edu	37	22	38051355	38051355	+	Silent	SNP	G	G	A	rs762989		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SH3BP1-90	NM_018957	exon18	c.G1770A	p.P590P	AGCCCCGCCCTTG	.	17	7	0	0	G|0.825;A|0.175	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	35	19	0	0	A|0.354;G|0.646	0	0	0	0	0
GALR3	8484	hgsc.bcm.edu	37	22	38221072	38221072	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GALR3-90	NM_003614	exon2	c.G702A	p.G234G	CGCGGGGCGCGCC	.	7	6	0	0	.	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FANCD2-229	NM_001018115	exon26	c.A2391G	p.V797V	GATTGTAAATGCC	.	94	6	69	0	A|0.909;G|0.091	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FANCD2-229	NM_001018115	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	130	6	88	0	G|0.990;T|0.010	0	0	0	0	0
CRTAP	10491	hgsc.bcm.edu	37	3	33155738	33155738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CRTAP-90	NM_006371	exon1	c.G169A	p.G57S	TACAGCGGCGAGC	.	68	9	5	0	.	0	0	0	0	0
FBXL2	25827	broad.mit.edu	37	3	33339167	33339167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FBXL2-289	NM_012157	exon2	c.C15A	p.N5K	CTCAAACAATGAT	.	64	4	96	1	.	0	0	0	0	0
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44283769	44283769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001145030	exon1	c.G224C	p.G75A	GGGCTGGAAAGGC	.	353	80	174	0	.	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GPX1-68	.	.	.	.	GACTGGGCCGCCG	.	56	18	4	0	.	0	0	0	0	0
RASSF1	11186	hgsc.bcm.edu	37	3	50378176	50378176	+	Missense_Mutation	SNP	T	T	G	rs4688725	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	RASSF1-417	NM_007182	exon1	c.A61C	p.K21Q	GGCCCTTCCCAGC	.	7	4	0	0	T|0.731;G|0.269	0	0	0	0	0
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CACNA1D-100	NM_001128840	wholegene			TTCGTGGATGATG	.	743	9	231	0	.	0	0	0	0	0
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62631437	62631437	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CADPS-281	NM_003716	exon6	c.G1285C	p.E429Q	GTTTCTCTCCTCC	.	217	53	150	0	.	0	0	0	0	0
PTPLB	201562	hgsc.bcm.edu	37	3	123303824	123303824	+	Silent	SNP	A	A	G	rs112371142	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PTPLB-226	NM_198402	exon1	c.T51C	p.G17G	CCTGCCACCGCCG	.	17	15	0	0	A|0.818;G|0.182	0	0	0	0	0
MYLK	4638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123385189	123385189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MYLK-365	NM_053025	exon22	c.G3708A	p.M1236I	AGGGGGCATTGCT	.	92	26	60	0	.	0	0	0	0	0
GP9	2815	broad.mit.edu	37	3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GP9-90	NM_000174	exon3	c.G319T	p.A107S	CCCGAGGCCCTGC	.	131	13	23	1	.	0	0	0	0	0
ATR	545	bcgsc.ca	37	3	142217537	142217537	+	Silent	SNP	A	A	G	rs2227932	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ATR-1139	NM_001184	exon32	c.T5460C	p.Y1820Y	TGAGTCATAAAAA	.	128	6	163	1	T|0.295;G|0.053	0	0	0	0	0
MCF2L2	23101	bcgsc.ca	37	3	183027542	183027542	+	Missense_Mutation	SNP	T	T	G	rs7639705	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MCF2L2-293	NM_015078	exon10	c.A1075C	p.I359L	TAAGAATCTGCTC	.	118	5	100	0	T|0.718;G|0.282	0	0	0	0	0
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193039524	193039524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ATP13A5-144	NM_198505	exon16	c.G1861T	p.V621F	TGTAGACATGGAA	.	89	35	111	0	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	102	11	7	0	C|0.960;G|0.040	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389148	1389148	+	Silent	SNP	T	T	C	rs79888804	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CRIPAK-90	NM_175918	exon1	c.T849C	p.H283H	CTCACATGTGCCG	.	165	18	5	0	T|0.980;C|0.020	0	0	0	0	0
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	BST1-90	NM_004334	exon1	c.G107C	p.G36A	GGCGCGGGGAGGG	.	6	6	0	0	G|0.084;C|0.916	0	0	0	0	0
ENAM	10117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510524	71510524	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ENAM-93	NM_031889	exon9	c.G3381T	p.G1127G	AAGAGGGACCAAT	.	556	89	389	1	.	0	0	0	0	0
ANKRD17	26057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74012588	74012588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ANKRD17-234	NM_198889	exon10	c.G1762T	p.A588S	CGTTAGCTCCTGT	.	206	32	107	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	835	22	603	12	.	0	0	0	0	0
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	91234151	91234151	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001145065	exon3	c.T1462C	p.L488L	AATAGTTTAAGAA	.	120	9	87	0	.	0	0	0	0	0
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	99996090	99996090	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ADH5-227	NM_000671	exon7	c.C936T	p.R312R	CCATGTGCGACCT	.	664	49	435	0	.	0	0	0	0	0
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128608947	128608947	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	INTU-91	NM_015693	exon8	c.G1374A	p.Q458Q	TCAGCAGTACGAT	.	110	19	77	0	.	0	0	0	0	0
GRIA2	2891	hgsc.bcm.edu	37	4	158256822	158256822	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GRIA2-515	NM_001083619	exon10	c.1267-1G>T	.	CATATAGGAATCT	.	89	5	120	0	.	0	0	0	0	0
DDX60	55601	bcgsc.ca	37	4	169188780	169188780	+	Missense_Mutation	SNP	T	T	C	rs576619	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DDX60-25	NM_017631	exon22	c.A2992G	p.I998V	AATGAATGTCACC	.	295	8	326	3	T|0.915;C|0.085	0	0	0	0	0
ZSWIM6	57688	hgsc.bcm.edu	37	5	60628774	60628774	+	Silent	SNP	C	C	T	rs76811816		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_020928	exon1	c.C675T	p.V225V	GCAAGTCGGTGAG	.	11	6	0	0	C|0.932;T|0.068	0	0	0	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73169041	73169041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001080479	exon22	c.C2784G	p.I928M	TGTGATCGACCGA	.	230	64	185	0	.	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950781	79950781	+	Missense_Mutation	SNP	A	A	G	rs1650697	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MSH3-661	NM_002439	exon1	c.A235G	p.I79V	CCGCACATAGTAG	.	9	6	0	0	G|0.787;A|0.213	0	0	0	0	0
FAM81B	153643	bcgsc.ca	37	5	94749723	94749723	+	Silent	SNP	G	G	A	rs7726891	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FAM81B-92	NM_152548	exon4	c.G366A	p.A122A	CCAGGCGCGTACC	.	188	10	114	1	G|0.759;A|0.241	0	0	0	0	0
PDLIM4	8572	ucsc.edu	37	5	131607080	131607080	+	Silent	SNP	A	A	G	rs270619	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PDLIM4-91	NM_003687	exon5	c.A591G	p.P197P	GGAGCCAGCCGAG	.	103	49	16	0	A|0.766;G|0.233	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	10	10	0	0	T|0.632;C|0.368	0	0	0	0	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140223018	140223018	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PCDHA8-92	NM_031856	exon1	c.C2112A	p.I704I	CGCCATCTGCGCG	.	279	29	132	0	.	0	0	0	0	0
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140515063	140515063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PCDHB5-95	NM_015669	exon1	c.T47G	p.F16C	TTATGTTTCTTGC	.	149	63	125	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	50	18	2	0	.	0	0	0	0	0
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149758877	149758877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TCOF1-155	NM_001135243	exon16	c.C2564G	p.A855G	CCGTGGCTACAGC	.	358	87	195	1	.	0	0	0	0	0
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176318107	176318107	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HK3-294	NM_002115	exon4	c.G345T	p.G115G	CCTATGCCCCTCA	.	109	13	60	0	.	0	0	0	0	0
TRIM52	84851	hgsc.bcm.edu	37	5	180687431	180687431	+	Silent	SNP	T	T	C	rs78075294		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TRIM52-90	NM_032765	exon1	c.A384G	p.E128E	TTCCTCTTCTTCT	.	125	16	105	0	T|0.500;C|0.500	0	0	0	0	0
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TRIM52-90	NM_032765	exon1	c.A375G	p.E125E	TTCTTCTTCCTCC	.	122	15	97	0	T|0.991;C|0.009	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	16	16	0	0	A|0.006;G|0.994	0	0	0	0	0
HIST1H3G	8355	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26271439	26271439	+	Silent	SNP	C	C	G	rs41266825	byfrequency;alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	HIST1H3G-90	NM_003534	exon1	c.G174C	p.S58S	CTCAGTCGACTTC	.	239	37	82	0	C|0.991;A|0.009	0	0	0	0	0
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27419101	27419101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF184-91	NM_007149	exon6	c.G2237A	p.R746K	TGCAGTCTCTGAT	.	139	20	109	0	.	0	0	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615260	30615260	+	Silent	SNP	C	C	T	rs3132594	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C6orf136-90	NM_001161376	exon1	c.C252T	p.R84R	GAGGCGCTGCCGG	.	64	43	1	0	C|0.944;T|0.056	0	0	0	0	0
DPCR1	135656	bcgsc.ca	37	6	30917365	30917365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DPCR1-90	NM_080870	exon2	c.C1124T	p.P375L	CCACACCATCCCC	.	242	13	187	4	.	0	0	0	0	0
DPCR1	135656	bcgsc.ca	37	6	30917368	30917368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DPCR1-90	NM_080870	exon2	c.C1127T	p.S376F	CACCATCCCCAGC	.	243	24	180	3	.	0	0	0	0	0
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32007391	32007391	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CYP21A2-68	.	.	.	.	CTGGTCCATCCAA	.	723	142	424	0	.	0	0	0	0	0
NOTCH4	4855	hgsc.bcm.edu	37	6	32163664	32163664	+	Silent	SNP	C	C	T	rs8192581		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	NOTCH4-1321	NM_004557	exon30	c.G5562A	p.G1854G	CCCGCCCCCATGC	.	14	6	0	0	C|0.995;T|0.005	0	0	0	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CNPY3-69	NM_006586	exon1	c.50_52del	p.17_18del	TTCCCTTGCTGCT	.	180	9	13	0	.	0	0	0	0	0
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47200618	47200618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TNFRSF21-227	NM_014452	exon6	c.G1851T	p.E617D	GGGAATCTCTTCA	.	195	32	92	0	.	0	0	0	0	0
MUT	4594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49416590	49416590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MUT-91	NM_000255	exon7	c.G1383C	p.E461D	TATTCCCTCAGCT	.	156	24	108	0	.	0	0	0	0	0
ICK	22858	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	52871155	52871155	+	Missense_Mutation	SNP	T	T	C	rs145842629	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ICK-421	NM_016513	exon14	c.A1702G	p.M568V	TCTGCATAGCAGA	.	132	32	81	0	T|0.999;C|0.001	0	0	0	0	0
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70890358	70890358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	COL19A1-156	NM_001858	exon44	c.G2718T	p.E906D	GGGTGAGAGAGGA	.	218	33	143	0	.	0	0	0	0	0
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101246658	101246658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ASCC3-96	NM_006828	exon8	c.G1326C	p.R442S	GGGAATCCTTACT	.	102	19	89	0	.	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	49	48	0	0	G|0.668;A|0.332	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	13	13	0	0	G|0.492;C|0.508	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	6	6	0	0	G|0.411;T|0.589	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TNRC18-46	NM_001080495	exon5	c.C1938T	p.G646G	GCCGCCGCCCGCT	.	39	27	0	0	G|0.797;A|0.203	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5428642	5428642	+	Silent	SNP	G	G	A	rs144662045		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TNRC18-46	NM_001080495	exon5	c.C813T	p.T271T	ATTCTTGGTCTTG	.	31	19	0	0	G|0.955;A|0.045	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	48	28	2	0	T|0.731;G|0.269	0	0	0	0	0
SCIN	85477	broad.mit.edu	37	7	12610451	12610451	+	Silent	SNP	G	G	A	rs76096341	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SCIN-24	NM_001112706	exon1	c.G39A	p.A13A	CCGGGCGGGCAAG	.	160	6	58	1	G|0.970;A|0.030	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	18	4	1	0	C|0.329;G|0.671	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123697	45123697	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001146334	exon2	c.G2082A	p.S694S	GGCTGACGAGAGA	.	20	3	12	1	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45125695	45125695	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001146334	exon2	c.G84A	p.A28A	AGCGGCCGCATCG	.	8	6	0	0	.	0	0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	70255577	70255579	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	AUTS2-92	NM_015570	exon19	c.3375_3377del	p.1125_1126del	CTACAGCCACCAC	.	129	8	14	0	.	0	0	0	0	0
POR	5447	hgsc.bcm.edu	37	7	75615364	75615364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	POR-23	NM_000941	exon14	c.T1793C	p.F598S	TGGCCTTCTCCCG	.	350	17	65	0	.	0	0	0	0	0
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128851520	128851520	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SMO-2451	NM_005631	exon11	c.C1845T	p.S615S	TGTCTCCTCTGCC	.	149	42	98	0	.	0	0	0	0	0
SLC4A2	6522	bcgsc.ca	37	7	150761314	150761314	+	Missense_Mutation	SNP	G	G	A	rs2303929	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SLC4A2-90	NM_003040	exon3	c.G77A	p.G26E	GCCCTGGGACGCC	.	143	6	128	1	G|0.779;A|0.221	0	0	0	0	0
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151478345	151478345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PRKAG2-658	NM_016203	exon3	c.G359A	p.R120H	CTCATGCGTCGAG	.	36	21	40	0	.	0	0	0	0	0
FAM167A	83648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11282142	11282142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FAM167A-90	NM_053279	exon3	c.G385A	p.E129K	GCATCTCCGTCTG	.	103	43	90	0	.	0	0	0	0	0
LOXL2	4017	bcgsc.ca	37	8	23186007	23186007	+	Silent	SNP	T	T	C	rs1051146	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	LOXL2-272	NM_002318	exon6	c.A1038G	p.E346E	CCCCCATTCTCCA	.	181	6	130	0	T|0.374;C|0.626	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	15	13	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0
ADRB3	155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37823625	37823625	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ADRB3-522	NM_000025	exon1	c.G363T	p.V121V	GGCGGTCACACAC	.	346	136	40	0	.	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	20	7	1	0	T|0.642;G|0.358	0	0	0	0	0
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87683246	87683246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CNGB3-93	NM_019098	exon4	c.G419A	p.R140H	CTTTGACGCATTC	.	52	14	80	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	8	8	0	0	A|0.118;G|0.882	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	5	5	0	0	T|0.010;C|0.990	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	DMRT1-515	NM_021951	exon1	c.T133A	p.S45T	AGCGGCTCGAGCG	.	11	6	1	0	T|0.317;A|0.683	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	24	12	0	0	G|0.572;C|0.428	0	0	0	0	0
C9orf41	138199	hgsc.bcm.edu;broad.mit.edu	37	9	77631307	77631307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C9orf41-92	NM_152420	exon3	c.A467G	p.D156G	AACTTATCCATGT	.	113	8	89	0	.	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79438595	79438595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PRUNE2-157	NM_015225	exon6	c.G709C	p.D237H	CTCCATCTGACAG	.	196	48	139	0	.	0	0	0	0	0
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118974097	118974097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PAPPA-77	NM_002581	exon4	c.G1804T	p.D602Y	TGCAATGATACCA	.	170	22	174	1	.	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	12	12	0	0	A|0.235;G|0.765	0	0	0	0	0
C9orf96	169436	bcgsc.ca	37	9	136268084	136268084	+	Missense_Mutation	SNP	A	A	G	rs3124747	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C9orf96-334	NM_153710	exon14	c.A1417G	p.K473E	TCCCTCAAAAGCA	.	280	11	148	1	A|0.479;G|0.521	0	0	0	0	0
EHMT1	79813	hgsc.bcm.edu	37	9	140728974	140728974	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	EHMT1-154	NM_024757	exon26	c.C3714T	p.L1238L	GCAGCTCGGGTAC	.	61	22	3	0	.	0	0	0	0	0
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7890140	7890140	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	PNPLA4-130	NM_004650	exon4	c.181-1G>A	.	ACATTCCTAAAAA	.	118	17	154	0	.	0	0	0	0	0
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99955985	99955985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	SYTL4-132	NM_001129896	exon6	c.A447T	p.R149S	TGTCTCTCTTTTA	.	70	44	133	0	.	0	0	0	0	0
MAGEA11	4110	bcgsc.ca	37	X	148798223	148798223	+	Silent	SNP	T	T	C	rs2233050	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	MAGEA11-132	NM_005366	exon5	c.T1077C	p.L359L	GCTCCTTACCCAA	.	139	6	190	1	T|0.400;C|0.600	0	0	0	0	0
IRAK1	3654	bcgsc.ca	37	X	153284192	153284192	+	Missense_Mutation	SNP	A	A	G	rs1059702	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	IRAK1-1074	NM_001569	exon5	c.T587C	p.F196S	AACGGAAAGGGGC	.	343	9	345	3	0|0.003;T|0.067	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	39	16	0	0	-|0.389;CGC|0.611	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu	37	10	77158939	77158940	+	Nonsense_Mutation	INS	-	-	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	ZNF503-91	NM_032772	exon2	c.1509_1510insA	p.Y503_G504delinsX	AAAGCCGTAGGGG	.	83	30	22	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579470	7579471	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	TP53-70225	NM_001126112	exon4	c.217_218insC	p.V73fs	GGGCCACGGGGGG	.	64	47	53	0	.	0	0	0	0	0
SSUH2	51066	broad.mit.edu	37	3	8675505	8675506	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_015931	exon4	c.120_121insC	p.P40fs	GAGAGGCGGGGGC	.	210	7	102	0	.	0	0	0	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007363	131007364	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FNIP1-92	NM_133372	exon14	c.2774_2775insA	p.I925fs	ACAGCAATTTTTT	.	85	26	102	0	.	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	43	18	2	2	-|0.606;CCG|0.394	0	0	0	0	0
AGPAT2	10555	broad.mit.edu;bcgsc.ca	37	9	139581758	139581759	+	In_Frame_Ins	INS	-	-	CAG	rs201504151		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	AGPAT2-90	NM_006412	exon1	c.52_53insCTG	p.V18delinsLV	GCTGCACCAGCAG	.	70	39	4	0	-|0.922;CAG|0.078	0	0	0	0	0
C16orf3	750	ucsc.edu	37	16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52A	AGGCTATGGGGCA	.	224	0	58	0	T|0.361;C|0.639	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	74	3	77	0	.	0	0	0	0	0