Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	hgsc.bcm.edu	37	1	877831	877831	+	Missense_Mutation	SNP	T	T	C	rs6672356		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SAMD11-90	NM_152486	exon10	c.T1027C	p.W343R	TTCGCCTGGCAGC	.	7	7	0	0	T|0.004;C|0.996	0	0	0	0	0
AGRN	375790	hgsc.bcm.edu;broad.mit.edu	37	1	979279	979279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGRN-136	NM_198576	exon10	c.1875delC	p.H625fs	TGAGCACCCCCCG	.	73	24	13	0	.	0	0	0	0	0
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1153176	1153176	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDF4-154	NM_016547	exon7	c.C921T	p.P307P	GAGTGTGGGCACG	.	31	15	21	0	.	0	0	0	0	0
SCNN1D	6339	ucsc.edu;bcgsc.ca	37	1	1221031	1221031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCNN1D-90	NM_001130413	exon6	c.G545A	p.C182Y	CTGCCTGCAAACA	.	400	168	320	2	.	1	0	1	0	0
ACAP3	116983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1230156	1230156	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACAP3-90	NM_030649	exon20	c.C1854T	p.G618G	CGAGCTGCCATCC	.	333	146	214	1	.	74	46	28	0	0
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1247523	1247523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPSF3L-90	NM_001256456	exon18	c.C1630A	p.L544M	CCTTCAGGACGCT	.	56	21	22	0	.	1	1	0	0	0
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1275439	1275439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DVL1-658	NM_004421	exon8	c.G888T	p.E296D	GCCGGGCTCGATG	.	143	63	84	0	.	136	75	61	0	0
CALML6	163688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1848206	1848206	+	Missense_Mutation	SNP	A	A	T	rs200415259	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CALML6-90	NM_138705	exon4	c.A269T	p.N90I	TCTTCAACTGCGA	.	219	92	146	0	A|0.999;C|0.000	0	0	0	0	0
GABRD	2563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1959038	1959038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GABRD-92	NM_000815	exon5	c.G493A	p.D165N	GCCTGCGACATGG	.	244	110	163	1	.	11	11	0	0	0
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2341850	2341850	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX10-90	NM_002617	exon2	c.G153A	p.L51L	TGAGAGCAGCTCA	.	208	98	151	0	.	18	11	7	0	0
MMEL1	79258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2522472	2522472	+	Missense_Mutation	SNP	C	C	T	rs199926063		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MMEL1-90	NM_033467	exon24	c.G2297A	p.R766Q	GTGCCCCGGGCAC	.	175	73	52	1	.	18	5	13	0	0
ARHGEF16	27237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3380095	3380095	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF16-228	NM_014448	exon2	c.G447A	p.L149L	GAACCTGCGGAAC	.	354	161	239	0	.	1	1	0	0	0
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3672052	3672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC27-91	NM_152492	exon3	c.G474T	p.E158D	CGGAGAGATTGAC	.	199	82	132	0	.	0	0	0	0	0
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3807605	3807605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf174-68	NM_207356	exon3	c.A146C	p.K49T	GTGGCTTTGTGGG	.	45	28	34	0	.	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPL22-650	NM_000983	exon2	c.44delA	p.K15fs	TGCTTCTTTTTTT	.	44	20	24	0	.	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOL9-515	NM_024654	exon1	c.T148C	p.W50R	ACCGCCACCGTAG	.	4	4	0	0	A|0.020;G|0.980	0	0	0	0	0
DNAJC11	55735	broad.mit.edu	37	1	6727803	6727804	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJC11-652	NM_018198	exon4	c.343_344del	p.115_115del	CTCTCTTCTCTCT	.	258	7	186	0	.	0	0	0	0	0
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7721841	7721841	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAMTA1-520	NM_015215	exon8	c.G720C	p.V240V	CTCGGTGGAACAG	.	525	235	324	0	.	2	2	0	0	0
VAMP3	9341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7837354	7837354	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAMP3-90	NM_004781	exon3	c.G207A	p.R69R	GAAGAGGAAATAT	.	161	58	126	0	.	231	106	125	0	0
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7887208	7887208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PER3-93	NM_016831	exon17	c.C2195T	p.A732V	GGTCGGCCGGCTG	.	196	104	86	0	.	14	5	9	0	0
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	8074279	8074279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERRFI1-91	NM_018948	exon4	c.C380G	p.T127S	GGAGGGGTGGAAG	.	86	48	65	0	.	30	16	14	0	0
TMEM201	199953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9657097	9657097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM201-68	NM_001010866	exon3	c.G415A	p.A139T	GCCTTCGCTCCCC	.	308	112	150	0	.	15	7	8	0	0
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10190785	10190785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE4B-229	NM_001105562	exon14	c.G1825A	p.E609K	GTGGTTGAAAAAT	.	123	47	130	0	.	0	0	0	0	0
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10364624	10364624	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1B-93	NM_183416	exon21	c.T3381C	p.C1127C	CCACTGTAGCCAG	.	361	169	276	1	.	5	3	2	0	0
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10699787	10699787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASZ1-113	NM_001079843	exon21	c.T4492A	p.S1498T	TGAGTGAGGCCTT	.	155	58	105	2	.	2	1	1	0	0
CASZ1	54897	hgsc.bcm.edu	37	1	10719929	10719929	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASZ1-113	NM_001079843	exon6	c.G1170A	p.P390P	GGTGGGCGGAACC	.	29	15	0	0	.	1	1	0	0	0
SRM	6723	broad.mit.edu;bcgsc.ca	37	1	11115019	11115019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRM-90	NM_003132	exon7	c.G888T	p.K296N	ACCCACCTTGCGG	.	172	134	49	1	.	0	0	0	0	0
KIAA2013	90231	broad.mit.edu;mdanderson.org	37	1	11982929	11982929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA2013-91	NM_138346	exon2	c.A1651G	p.I551V	GCGTGATGGGCTG	.	873	242	629	1	.	183	90	93	0	0
DHRS3	9249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12632790	12632792	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS3-91	NM_004753	exon5	c.788_790del	p.263_264del	TCCATGGGAGGAG	.	102	34	83	0	.	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12854135	12854135	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRAMEF1-22	NM_023013	exon3	c.G359A	p.W120X	GAGCCTGGGCCCT	.	401	143	291	5	.	0	0	0	0	0
LOC440563	0	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	13183603	13183603	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001136561	exon2	c.G270A	p.V90V	TCGGTTCACTTTT	.	299	112	225	0	.	0	0	0	0	0
PRAMEF19	645414	bcgsc.ca	37	1	13475084	13475084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099790	exon3	c.G1045A	p.A349T	GAGTGGCAGCAAC	.	1504	616	1095	3	.	0	0	0	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	17	10	0	0	G|0.647;A|0.353	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174571	16174571	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.G9T	p.R3R	GGTCCGGGAAACC	.	221	99	82	0	.	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174581	16174581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.C19T	p.H7Y	ACCAGGCATCTCT	.	247	109	93	0	.	2	2	0	0	0
EPHA2	1969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16461615	16461615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA2-1419	NM_004431	exon7	c.G1498A	p.D500N	TGGTGTCTGGGGC	.	113	52	70	2	.	3	1	2	0	0
NBPF1	55672	broad.mit.edu;bcgsc.ca	37	1	16891333	16891333	+	Missense_Mutation	SNP	C	C	T	rs3872309	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	CTTCCCCTTCTTT	.	46	17	34	0	C|0.500;T|0.500	224	218	6	0	0
PADI3	51702	broad.mit.edu	37	1	17575686	17575686	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PADI3-132	NM_016233	exon1	c.G54A	p.V18V	CGCGGTGTGTGTG	.	284	7	170	0	.	1	1	0	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181157	19181157	+	Silent	SNP	C	C	T	rs202163137	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAS1R2-93	NM_152232	exon3	c.G807A	p.A269A	GACGCGCGCTGTG	.	219	6	127	0	C|0.999;A|0.000	0	0	0	0	0
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTR6-91	NM_000871	exon3	c.G1045T	p.A349S	AGCCTGGCCTCGC	.	116	20	33	3	.	8	8	0	0	0
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21940490	21940490	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAP1GAP-245	NM_001145658	exon8	c.G576A	p.R192R	CAGCAGCCGCAGG	.	121	61	111	0	.	0	0	0	0	0
EPHA8	2046	ucsc.edu;bcgsc.ca	37	1	22915595	22915595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA8-1380	NM_020526	exon5	c.C1211T	p.A404V	TGCTGGCCCACAT	.	424	186	194	3	.	0	0	0	0	0
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22927299	22927299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA8-1380	NM_020526	exon14	c.G2534A	p.R845Q	CCAACCGGGATGT	.	221	97	122	2	.	0	0	0	0	0
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23636987	23636987	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPR-24	NM_001102398	exon11	c.A1871T	p.Q624L	AATTCCTGGTTGT	.	71	25	62	0	.	109	53	56	0	0
ASAP3	55616	bcgsc.ca;mdanderson.org	37	1	23763445	23763445	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASAP3-155	NM_017707	exon15	c.C1435T	p.Q479X	GTGACTGCATGCG	.	165	75	97	2	.	1	1	0	0	0
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24417405	24417405	+	Silent	SNP	G	G	A	rs201898557		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYOM3-93	NM_152372	exon12	c.C1314T	p.V438V	ACCTTCGACGAGG	.	195	78	145	0	G|0.999;A|0.001	0	0	0	0	0
GRHL3	57822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24664169	24664169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRHL3-91	NM_021180	exon6	c.A745G	p.K249E	CACATCAAGTCAG	.	209	87	165	0	.	0	0	0	0	0
STPG1	90529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24706214	24706214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199012	exon5	c.T391C	p.S131P	TGCTGGAACACGA	.	96	33	82	0	.	11	5	6	0	0
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24975468	24975468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM1-93	NM_005839	exon4	c.G353A	p.G118E	TCGCGGGAATCCC	.	42	13	37	0	.	36	15	21	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856442	26856442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KA1-510	NM_002953	exon1	c.C31G	p.P11A	CCCTGGCCGCTCA	.	8	4	0	0	.	4	2	2	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	7	7	0	0	T|0.065;G|0.935	0	0	0	0	0
TMEM222	84065	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27648800	27648800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM222-90	NM_032125	exon1	c.C112A	p.Q38K	CAATATCAAGGCT	.	388	144	233	3	.	34	21	13	0	0
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27720657	27720657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR3-91	NM_005281	exon2	c.G355A	p.A119T	GCAATGGCCTTTA	.	119	53	63	0	.	24	13	11	0	0
AHDC1	27245	hgsc.bcm.edu	37	1	27877519	27877519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHDC1-90	NM_001029882	exon6	c.C1108T	p.P370S	CGTGCGGTGAGCA	.	48	25	7	0	.	24	11	13	0	0
HCRTR1	3061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32084894	32084894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HCRTR1-523	NM_001525	exon3	c.A101G	p.Y34C	TCCGCTATCTGTG	.	132	66	97	0	.	0	0	0	0	0
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32197006	32197006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAI2-526	NM_001703	exon29	c.G3775A	p.V1259I	TGTTGACCTCCTT	.	199	91	120	0	.	1	1	0	0	0
BAI2	576	broad.mit.edu;bcgsc.ca	37	1	32198634	32198634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAI2-526	NM_001703	exon26	c.C3563T	p.A1188V	AAGACAGCAAAGA	.	450	16	330	0	.	3	2	1	0	0
SFPQ	6421	hgsc.bcm.edu	37	1	35658609	35658609	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SFPQ-231	NM_005066	exon1	c.T42C	p.G14G	GAAGCCACCACCG	.	17	9	3	0	.	58	31	27	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437666	36437666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_024852	exon4	c.T354A	p.D118E	AAAAGATCGACCT	.	273	113	231	0	.	8	2	6	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437741	36437741	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_024852	exon4	c.G429A	p.R143R	AGGACGGACCTTG	.	324	94	264	0	.	3	2	1	0	0
MACF1	23499	broad.mit.edu	37	1	39760802	39760802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACF1-165	NM_012090	exon20	c.C2254A	p.P752T	AACCACCCAGCCA	.	100	3	84	0	.	3	3	0	0	0
PPCS	79717	hgsc.bcm.edu	37	1	42922266	42922266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPCS-90	NM_024664	exon1	c.30delC	p.F10fs	CGAGTTCCCCCAG	.	89	37	12	1	.	0	0	0	0	0
YBX1	4904	broad.mit.edu;bcgsc.ca	37	1	43166582	43166582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	YBX1-95	NM_004559	exon7	c.C871T	p.R291C	CGCAGACGCCCAG	.	601	65	472	2	.	1816	1814	1	1	0
ERMAP	114625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43308843	43308843	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERMAP-91	NM_018538	exon11	c.C1368T	p.I456I	TATAATCCTGTCC	.	121	49	111	0	.	16	12	4	0	0
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44083409	44083409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRF-232	NM_002840	exon25	c.G4198A	p.V1400I	ATAGGCGTCCCCG	.	342	134	235	1	.	0	0	0	0	0
TESK2	10420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45923405	45923405	+	Missense_Mutation	SNP	C	C	T	rs149714069	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TESK2-624	NM_007170	exon2	c.G53A	p.R18H	TCAAGACGCTCCA	.	114	47	80	1	C|0.998;T|0.002	1	1	0	0	0
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_003629	exon10	c.1321_1323del	p.441_441del	GGAGTCGTTGTGC	.	169	74	142	0	.	0	0	0	0	0
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46509521	46509521	+	Missense_Mutation	SNP	A	A	G	rs144541540		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_003629	exon10	c.T1210C	p.C404R	TCACACAGTGCTT	.	113	53	100	0	A|1.000;G|0.000	33	16	17	0	0
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47182080	47182080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_014774	exon2	c.C221T	p.P74L	CAGAGCGGATAAC	.	264	107	238	0	.	80	46	34	0	0
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	47904233	47904233	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXD2-226	NM_004474	exon1	c.G426A	p.Q142Q	CCTGCAGAGCCCC	.	321	136	210	0	.	3	0	3	0	0
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	50885264	50885264	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032110	exon3	c.G702A	p.R234R	GCCGGGCCGCACC	.	109	50	18	0	.	0	0	0	0	0
BTF3L4	91408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52552390	52552390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTF3L4-135	NM_001243767	exon5	c.T235G	p.X79E	ATCTTGTAGAAAA	.	86	33	48	0	.	0	0	0	0	0
GPX7	2882	broad.mit.edu;bcgsc.ca	37	1	53068170	53068170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPX7-90	NM_015696	exon1	c.C89T	p.A30V	TCAAGGCGGTCAA	.	359	162	130	1	.	0	0	0	0	0
SELRC1	65260	bcgsc.ca	37	1	53158531	53158531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SELRC1-90	NM_023077	exon2	c.C115T	p.R39W	CCAGCCGATAGCA	.	62	28	68	2	.	0	0	0	0	0
PODN	127435	broad.mit.edu	37	1	53535706	53535706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PODN-92	NM_153703	exon2	c.G323T	p.G108V	AGCCCGGGCCTGG	.	299	7	119	0	.	0	0	0	0	0
TACSTD2	4070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59042424	59042424	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TACSTD2-90	NM_002353	exon1	c.C405T	p.R135R	GTCCGTGCGGCGC	.	141	67	34	1	.	1	1	0	0	0
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60312772	60312772	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HOOK1-154	NM_015888	exon10	c.C844T	p.L282L	AAGCAGCTAATCG	.	139	58	127	0	.	3	3	0	0	0
ATG4C	84938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63282309	63282309	+	Missense_Mutation	SNP	A	A	T	rs11545528	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG4C-91	NM_178221	exon4	c.A224T	p.N75I	CAGGAAATGTAGA	.	103	42	90	1	A|0.999;G|0.000	10	6	4	0	0
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63999139	63999139	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFCAB7-68	NM_032437	exon5	c.T501C	p.Y167Y	ATTATATATGACA	.	62	30	52	0	.	16	6	10	0	0
DIRAS3	9077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512838	68512838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIRAS3-848	NM_004675	exon2	c.T143C	p.V48A	TTCCCCACACCAG	.	204	82	215	1	.	9	8	1	0	0
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90486370	90486370	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF326-91	NM_182976	exon10	c.C1194T	p.H398H	TGATCACATGATG	.	167	60	186	0	.	44	26	18	0	0
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91790300	91790300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HFM1-112	NM_001017975	exon21	c.T2359C	p.Y787H	TATAATACCAAGC	.	180	83	143	0	.	1	0	1	0	0
TGFBR3	7049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92200429	92200429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGFBR3-93	NM_001195683	exon5	c.G472A	p.E158K	GATGTTCATTTCC	.	98	23	117	2	.	202	129	73	0	0
KIAA1107	23285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92647016	92647016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015237	exon8	c.C2462T	p.S821F	CCTCCTCCGATGA	.	196	77	160	0	.	7	1	6	0	0
HIAT1	64645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100527406	100527406	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIAT1-90	NM_033055	exon5	c.T387C	p.V129V	TGCTGTTATCTCT	.	125	45	128	0	.	56	32	24	0	0
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100586978	100586978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SASS6-70	NM_194292	exon5	c.G439A	p.V147M	TCTCCACATCATT	.	53	23	43	0	.	6	4	2	0	0
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108298065	108298065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAV3-1339	NM_006113	exon12	c.T1157G	p.L386R	ATAGATAGCTGAA	.	69	19	83	0	.	1	1	0	0	0
HENMT1	113802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109197353	109197353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HENMT1-93	NM_144584	exon5	c.T383C	p.I128T	CACGTTATCAAGT	.	209	95	185	1	.	7	3	4	0	0
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109740206	109740206	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324-157	NM_020775	exon16	c.2232delC	p.I744fs	CATCATCCCCCCA	.	102	49	82	0	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793092	109793092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR2-526	NM_001408	exon1	c.C391G	p.L131V	CTCACACTGCCCG	.	128	57	126	0	.	2	1	1	0	0
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110085867	110085867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR61-91	NM_031936	exon2	c.A223G	p.K75E	CTCCGAAAATTTG	.	219	16	170	0	.	0	0	0	0	0
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110148988	110148988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNAT2-227	NM_005272	exon5	c.A532G	p.R178G	TGACTCTGGATCG	.	286	102	214	1	.	1	1	0	0	0
ALX3	257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110607490	110607490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALX3-90	NM_006492	exon2	c.313delC	p.Q105fs	GCAGCTGGGGGAA	.	68	26	45	0	.	0	0	0	0	0
KCNA2	3737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	111144784	111144784	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNA2-91	NM_001204269	exon4	c.A903G	p.R301R	CAGAGGTCTGCGT	.	74	37	45	1	.	0	0	0	0	0
PIFO	128344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111890299	111890299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_181643	exon3	c.T163A	p.Y55N	AAGGGATATGGCT	.	68	28	56	1	.	0	0	0	0	0
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113666622	113666622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG2-229	NM_014813	exon18	c.C3097T	p.P1033S	AGAGAGCCAGACT	.	128	45	112	0	.	1	0	1	0	0
MAGI3	260425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114189207	114189207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGI3-524	NM_152900	exon12	c.C2098G	p.P700A	GGATCCCCAAAAT	.	210	93	169	0	.	2	0	2	0	0
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114506014	114506014	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIPK1-361	NM_152696	exon10	c.C2109T	p.S703S	GGGAAGCTGTACA	.	176	70	191	0	.	0	0	0	0	0
WARS2	10352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	119683258	119683258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WARS2-90	NM_015836	exon1	c.C10T	p.H4Y	TTGAGTGCAGCGC	.	53	22	32	0	.	6	3	3	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	12	5	0	0	G|0.680;C|0.320	1	1	0	0	0
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144854181	144854181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4DIP-663	NM_014644	exon43	c.C6983T	p.A2328V	GTCCTTGCCTTCT	.	825	88	662	1	.	5	5	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	144871772	144871772	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4DIP-663	NM_014644	exon32	c.C5190A	p.G1730G	ACAGCAGCCAAGG	.	151	38	148	0	.	0	0	0	0	0
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145115843	145115843	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	TAGCTGTATTTTT	.	282	21	207	0	.	159	159	0	0	0
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145579296	145579296	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIAS3-658	NM_006099	exon5	c.C633T	p.L211L	CAACCTCTTTGTC	.	52	27	56	0	.	18	12	6	0	0
ANP32E	81611	bcgsc.ca	37	1	150195565	150195565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANP32E-90	NM_030920	exon6	c.A683T	p.D228V	TCTTCATCCTTGA	.	136	52	154	4	.	0	0	0	0	0
PRPF3	9129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150298336	150298336	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRPF3-91	NM_004698	exon3	c.A273G	p.L91L	AGAGCTAAAGGTA	.	176	63	190	0	.	0	0	0	0	0
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150636172	150636172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLPH3L-91	NM_018178	exon3	c.C251T	p.A84V	CGCATGGCCAGCT	.	130	56	112	0	.	19	9	10	0	0
GABPB2	126626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151065754	151065754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GABPB2-90	NM_144618	exon4	c.G363T	p.E121D	CGTAGAGTTACTT	.	123	52	105	0	.	15	8	7	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151787534	151787534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_005060	exon5	c.C666G	p.S222R	CAGCTGGCTGCCT	.	306	146	240	0	.	0	0	0	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151789189	151789189	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_005060	exon4	c.C249T	p.C83C	GTGCTGGCATCGG	.	188	95	117	0	.	0	0	0	0	0
C2CD4D	100191040	bcgsc.ca	37	1	151811467	151811467	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	CACATGCGGTGGG	.	85	36	65	1	.	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	8	0	8	0	0
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152883314	152883314	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IVL-93	NM_005547	exon2	c.G1041A	p.E347E	CCTGGAGCAGCAG	.	248	103	208	1	.	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	6	4	2	0	A|0.594;C|0.406	0	0	0	0	0
UBAP2L	9898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154224048	154224048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBAP2L-91	NM_001127320	exon14	c.T1583C	p.V528A	AGCCTGTCCTTTC	.	72	22	56	1	.	79	45	34	0	0
UBAP2L	9898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154224069	154224069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBAP2L-91	NM_001127320	exon14	c.1604delC	p.T535fs	AGTCCACCCCCAC	.	64	14	60	0	.	0	0	0	0	0
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154962713	154962713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLAD1-93	NM_025207	exon4	c.T1344A	p.F448L	ACAGTTTCTACAG	.	155	65	98	0	.	51	40	11	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155452085	155452085	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASH1L-234	NM_018489	exon3	c.G576A	p.T192T	AGATGGCGTTGCA	.	95	38	74	0	.	10	4	6	0	0
KIAA0907	22889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155885735	155885735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0907-90	NM_014949	exon13	c.C1574T	p.A525V	GGAAAGGCTGGTG	.	56	17	56	1	.	17	11	6	0	0
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156779155	156779155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH2D2A-90	NM_001161441	exon7	c.A872G	p.N291S	GGCTCATTGTAGA	.	83	26	73	0	.	0	0	0	0	0
SH2D2A	9047	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156779558	156779558	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH2D2A-90	NM_001161441	exon6	c.A639G	p.S213S	AAAGTTTGATTCT	.	95	47	51	1	.	0	0	0	0	0
ARHGEF11	9826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156926236	156926236	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF11-233	NM_198236	exon19	c.A1647T	p.L549L	GAACGGTAGCCAC	.	134	66	86	1	.	27	17	10	0	0
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156954154	156954154	+	Missense_Mutation	SNP	A	A	T	rs151017400	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF11-233	NM_198236	exon3	c.T200A	p.V67D	ACCAGAACAATGC	.	229	92	188	0	A|1.000;C|0.000	16	10	6	0	0
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803262	157803262	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon5	c.C759T	p.C253C	CCCAGAGCAGAGG	.	55	30	52	0	.	0	0	0	0	0
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804424	157804424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon4	c.A491G	p.Q164R	CCTGTCTGGCACA	.	90	32	84	0	.	0	0	0	0	0
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158064671	158064671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIRREL-91	NM_018240	exon15	c.A2035G	p.T679A	GACACAACCAGCC	.	239	96	173	0	.	6	6	0	0	0
OR10K2	391107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158389762	158389762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR10K2-69	NM_001004476	exon1	c.T895A	p.S299T	GAGCTGATTTGAA	.	167	62	133	1	.	0	0	0	0	0
OR10Z1	128368	hgsc.bcm.edu;bcgsc.ca	37	1	158576487	158576487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR10Z1-70	NM_001004478	exon1	c.259delG	p.G87fs	CTGGCTGGGGGGG	.	135	54	104	1	.	0	0	0	0	0
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159898610	159898610	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF9-156	NM_001135050	exon19	c.2568delG	p.G856fs	AGTGGGCCCCATC	.	37	12	36	0	.	0	0	0	0	0
KCNJ10	3766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160011970	160011970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNJ10-91	NM_002241	exon2	c.C353T	p.A118V	AGGAAGGCTCCAG	.	134	55	96	0	.	0	0	0	0	0
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160969185	160969185	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	F11R-92	NM_016946	exon9	c.815+1G>A	.	CACTCACCCTTTC	.	195	71	196	0	.	0	0	0	0	0
TSTD1	100131187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161007709	161007709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001113207	exon3	c.A290T	p.Y97F	CCAGTGTATCCAA	.	117	48	72	0	.	0	0	0	0	0
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130942	161130942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP21-660	NM_001014443	exon3	c.G512A	p.S171N	TGTTCAGCATACG	.	91	43	64	0	.	25	10	15	0	0
NDUFS2	4720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161173239	161173239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDUFS2-91	NM_001166159	exon2	c.G108T	p.Q36H	TCGGCAGTGGCAG	.	148	10	106	0	.	114	106	8	0	0
FCGR3A	2214	broad.mit.edu;bcgsc.ca	37	1	161514695	161514695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGR3A-91	NM_000569	exon4	c.C481T	p.H161Y	TCAGGTGAATAGG	.	239	85	207	1	.	9	9	0	0	0
FCGR3A	2214	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	161514700	161514700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGR3A-91	NM_000569	exon4	c.C476T	p.P159L	TGAATAGGGTCTT	.	230	81	197	1	.	9	9	0	0	0
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	162467903	162467903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UHMK1-358	NM_144624	exon1	c.A113T	p.Y38F	CGGTGTATCGGGT	.	194	72	58	0	.	21	8	13	0	0
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166135378	166135378	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM78B-91	NM_001017961	exon1	c.G108A	p.E36E	CGAGGTCTCCTCG	.	195	76	135	0	.	2	1	1	0	0
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169578907	169578907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SELP-94	NM_003005	exon8	c.G1168C	p.E390Q	GACTCTCCAGCGG	.	102	50	74	0	.	0	0	0	0	0
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171168622	171168622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMO2-91	NM_001460	exon5	c.G622A	p.A208T	AATGCTGCTCAGG	.	241	108	196	1	.	0	0	0	0	0
ANKRD45	339416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173616087	173616087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD45-90	NM_198493	exon3	c.C394G	p.L132V	CATCCAGTTCTAC	.	139	56	114	1	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	8	8	0	0	T|0.229;C|0.771	2	0	2	0	0
ACBD6	84320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180471390	180471390	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD6-91	NM_032360	exon1	c.A12G	p.S4S	CAGGAATGATGAA	.	274	132	243	1	.	54	29	25	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180904988	180904988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1614-26	NM_020950	exon5	c.G1943A	p.R648Q	GACTGCGACTGCG	.	158	70	56	0	.	2	2	0	0	0
CACNA1E	777	broad.mit.edu;bcgsc.ca	37	1	181702837	181702837	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1E-95	NM_000721	exon21	c.C3213T	p.T1071T	CGTCACCGTCGCC	.	534	24	400	0	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181762806	181762806	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1E-95	NM_001205293	exon45	c.A5904C	p.P1968P	GGAGCCAGAGGTT	.	150	55	120	0	.	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu	37	1	182026352	182026352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF648-91	NM_001009992	exon2	c.C794G	p.P265R	CTCAGCGGCTTGC	.	17	9	0	0	.	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182026897	182026897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF648-91	NM_001009992	exon2	c.C249G	p.D83E	GGAGGAGTCAGAG	.	148	77	117	0	.	0	0	0	0	0
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186908147	186908147	+	Missense_Mutation	SNP	T	T	C	rs201251994	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2G4A-721	NM_024420	exon9	c.T703C	p.S235P	TATATGTCAACCT	.	61	29	70	0	T|0.999;A|0.001	0	0	0	0	0
B3GALT2	8707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193149518	193149518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	B3GALT2-91	NM_003783	exon2	c.A1175G	p.K392R	CAGTATTTTATCA	.	140	65	139	0	.	0	0	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197073232	197073232	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASPM-615	NM_018136	exon18	c.5149delA	p.I1717X	CAGCTATTTTTTT	.	54	20	40	0	.	0	0	0	0	0
CAMSAP2	23271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_203459	exon17	c.4270delA	p.K1424fs	ATCACTAAAAAAA	.	88	36	86	0	.	0	0	0	0	0
KIF21B	23046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200974545	200974545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF21B-96	NM_017596	exon5	c.C623T	p.A208V	GACAGGGCCCCCT	.	155	73	117	2	.	2	2	0	0	0
FMOD	2331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203317354	203317354	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMOD-137	NM_002023	exon2	c.C45G	p.L15L	CTGGGAGAGGGAG	.	200	90	142	1	.	0	0	0	0	0
SNRPE	6635	hgsc.bcm.edu;bcgsc.ca	37	1	203832839	203832839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SNRPE-514	NM_003094	exon3	c.130delG	p.E44fs	CGGATAGAAGGCT	.	321	0	316	0	.	0	0	0	0	0
MIR135B	442891	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205417469	205417469	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	AGCCCTACATGAG	.	111	42	79	0	.	0	0	0	0	0
EIF2D	1939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206769135	206769135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2D-92	NM_006893	exon13	c.C1441T	p.P481S	CAATGGGCTCTTG	.	135	66	100	1	.	60	33	27	0	0
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211462519	211462519	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCOR3-91	NM_001136224	exon8	c.721-1G>A	.	CTCTTAGGGTAAT	.	204	81	191	0	.	0	0	0	0	0
VASH2	79805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213125126	213125126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASH2-90	NM_024749	exon2	c.T242C	p.V81A	AAATGGTGGGCGC	.	65	30	66	0	.	0	0	0	0	0
RPS6KC1	26750	broad.mit.edu;bcgsc.ca	37	1	213277826	213277826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KC1-417	NM_012424	exon4	c.G293T	p.R98I	AAGAGAGAAGACA	.	89	42	99	2	.	10	8	2	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	12	12	0	0	T|0.721;G|0.279	19	0	19	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216246596	216246596	+	Silent	SNP	G	G	A	rs138416665		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USH2A-115	NM_206933	exon28	c.C5619T	p.V1873V	GTTAACGACAGCA	.	224	94	228	3	G|1.000;A|0.000	0	0	0	0	0
EPRS	2058	broad.mit.edu	37	1	220142206	220142206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPRS-92	NM_004446	exon32	c.A4481G	p.K1494R	ACACATTTGGCTC	.	246	6	182	0	.	347	346	1	0	0
TAF1A	9015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222737423	222737423	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAF1A-44	NM_005681	exon8	c.C939T	p.F313F	TGTATGGAATTCC	.	253	85	263	0	.	4	2	2	0	0
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568189	223568189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf65-91	NM_152610	exon1	c.C1372T	p.R458W	TTCCAGCGGTCCC	.	268	110	193	0	.	0	0	0	0	0
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223947169	223947169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN2-523	NM_001748	exon12	c.G1515C	p.K505N	TGAAAAGAAAGCT	.	61	22	42	0	.	5	2	3	0	0
PARP1	142	broad.mit.edu;bcgsc.ca	37	1	226573266	226573266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PARP1-727	NM_001618	exon7	c.C950T	p.A317V	GTCCAGGCAGTGA	.	310	15	173	0	.	64	60	4	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228475560	228475560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OBSCN-403	NM_001271223	exon41	c.C10997T	p.A3666V	AGGGTGCCATGCT	.	214	16	180	0	.	1	1	0	0	0
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230921739	230921739	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN9-91	NM_006615	exon12	c.A1494T	p.G498G	GGATGGAAATGTA	.	275	121	200	0	.	0	0	0	0	0
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231079568	231079568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC13-92	NM_024525	exon6	c.T656C	p.F219S	TGCTCAAATACCT	.	43	20	50	0	.	8	5	3	0	0
ARV1	64801	hgsc.bcm.edu	37	1	231131567	231131567	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARV1-154	NM_022786	exon4	c.510delA	p.A170fs	GACGGCAAAAAAA	.	64	25	50	0	.	0	0	0	0	0
TRIM67	440730	ucsc.edu;bcgsc.ca	37	1	231349649	231349649	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM67-229	NM_001004342	exon9	c.C2212T	p.Q738X	GGGCAGCAGCAGG	.	473	241	298	2	.	0	0	0	0	0
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231396359	231396359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNPAT-156	NM_014236	exon3	c.C368T	p.A123V	TTTGTGCCTTCAC	.	53	22	51	0	.	21	10	11	0	0
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231471391	231471391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC8-91	NM_175876	exon1	c.G2101A	p.A701T	GCTTGGCAGGTTT	.	139	62	119	0	.	16	10	6	0	0
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	240255872	240255872	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMN2-145	NM_020066	exon1	c.463delG	p.G155fs	AGGGTCGGGGGCC	.	150	68	128	0	.	0	0	0	0	0
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844883	248844883	+	Silent	SNP	G	G	A	rs201585486	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR14I1-46	NM_001004734	exon1	c.C723T	p.P241P	GAGCTGGGGGGAG	.	141	86	118	0	G|0.999;C|0.001	0	0	0	0	0
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249106288	249106288	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH3BP5L-90	NM_030645	exon7	c.T993C	p.D331D	CAGGGTATCGGTG	.	119	50	39	0	.	20	8	12	0	0
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	433695	433695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIP2C-156	NM_014974	exon14	c.G1652A	p.G551D	AGGATGCCATGCC	.	313	135	208	2	.	0	0	0	0	0
ADARB2	105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1284298	1284298	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADARB2-153	NM_018702	exon5	c.G1257A	p.E419E	GAGGTGCTCGCCG	.	181	68	89	0	.	0	0	0	0	0
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3205972	3205972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITRM1-91	NM_014889	exon7	c.A736T	p.T246S	CCCATGTAAGCTC	.	174	81	127	0	.	101	58	43	0	0
UCN3	114131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5415774	5415774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UCN3-90	NM_053049	exon2	c.91delC	p.P31fs	GCCAAGCCCATCT	.	98	48	75	0	.	0	0	0	0	0
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	7213881	7213881	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SFMBT2-141	NM_001029880	exon19	c.G2391A	p.P797P	GGTCGGCGGGCAC	.	39	21	19	0	.	4	0	4	0	0
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7788557	7788557	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITIH2-93	NM_002216	exon20	c.C2583T	p.G861G	GCTAGGCCAGTTC	.	226	101	202	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16930425	16930425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon56	c.C8896A	p.H2966N	CTAAGTGGAAGGA	.	66	29	75	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17024637	17024637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon31	c.T4541C	p.F1514S	GCCTGGAAAATCC	.	51	26	27	0	.	0	0	0	0	0
CUBN	8029	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17130173	17130173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon15	c.A1937T	p.D646V	AGGTAATCTTTGT	.	87	40	77	1	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17146555	17146555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon12	c.T1280C	p.V427A	CAGTTGACACCTG	.	281	117	244	0	.	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24762792	24762792	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1217-98	NM_019590	exon6	c.1482delC	p.G494fs	CCACGGCCCCCCT	.	99	38	74	0	.	0	0	0	0	0
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324108	27324108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD26-138	NM_014915	exon24	c.A3271G	p.T1091A	CCAAAGTCTTTTC	.	108	56	105	1	.	2	1	1	0	0
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27470451	27470451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MASTL-522	NM_001172303	exon11	c.C2423T	p.A808V	ATAATGCTCAAAG	.	58	24	99	0	.	32	20	12	0	0
MKX	283078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27964211	27964211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MKX-91	NM_001242702	exon7	c.T1006G	p.S336A	TATGGGACGACTT	.	102	39	62	0	.	1	1	0	0	0
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31139259	31139259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF438-154	NM_182755	exon7	c.G75C	p.R25S	ACCTTTCCTACTC	.	133	64	132	2	.	0	0	0	0	0
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	35929513	35929513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD8-612	NM_031866	exon1	c.G845A	p.G282D	CACAGGCCGATCC	.	185	91	140	1	.	7	3	4	0	0
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37442574	37442574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon13	c.A1614G	p.I538M	TAAAATAAATGGA	.	401	63	390	1	.	0	0	0	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37478469	37478469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon25	c.A2328G	p.I776M	TAAAATAAATGGA	.	136	32	148	0	.	0	0	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508025	37508025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon34	c.G3217A	p.E1073K	GAAAAGGAAAATA	.	230	94	212	0	.	0	0	0	0	0
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45869760	45869760	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOX5-228	NM_000698	exon1	c.C33T	p.G11G	CACTGGCAGCCAG	.	158	48	76	0	.	0	0	0	0	0
ALOX5	240	broad.mit.edu;bcgsc.ca	37	10	45939230	45939230	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOX5-228	NM_000698	exon12	c.T1628A	p.V543E	CCGTGGTGATCTT	.	142	83	62	1	.	0	0	0	0	0
MARCH8	220972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46028623	46028623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH8-68	NM_001002266	exon2	c.T37C	p.S13P	CCTGGGATGGAAT	.	117	50	79	0	.	5	4	1	0	0
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	A	rs111800394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPRIN2-90	NM_014696	exon3	c.G1128A	p.P376P	GGTGCCGTCCCCT	.	200	49	123	1	G|0.500;A|0.500	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49951020	49951020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDFY4-22	NM_020945	exon12	c.T1886C	p.L629P	CTCTGCTCCGGAT	.	26	7	32	0	.	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49951058	49951058	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDFY4-22	NM_020945	exon12	c.A1924T	p.R642X	GCCTTCAGAGTCT	.	38	18	57	0	.	0	0	0	0	0
PCDH15	65217	ucsc.edu;bcgsc.ca	37	10	55566476	55566476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDH15-193	.	.	.	.	GTTCAACTGTGCT	.	231	78	212	2	.	0	0	0	0	0
C10orf107	219621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63441022	63441022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf107-90	NM_173554	exon2	c.T22C	p.Y8H	ATTCAGTATTCAA	.	40	23	34	0	.	0	0	0	0	0
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	64159513	64159513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF365-92	NM_014951	exon5	c.1189delA	p.K397fs	ATGGCTAAAAAAA	.	109	49	91	0	.	0	0	0	0	0
DNA2	1763	hgsc.bcm.edu;broad.mit.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080449	exon15	c.2335delT	p.S779fs	TCCGTGAAAAAAA	.	73	32	63	0	.	0	0	0	0	0
CCAR1	55749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70496802	70496802	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCAR1-159	NM_018237	exon3	c.A243G	p.Q81Q	ATTACAACAGGTA	.	199	70	187	1	.	0	0	0	0	0
CCAR1	55749	broad.mit.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCAR1-159	NM_018237	exon10	c.961_962del	p.321_321del	AGTCGTGAGAGAG	.	24	7	18	0	.	0	0	0	0	0
C10orf35	219738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71391540	71391540	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf35-92	NM_145306	exon3	c.A41T	p.D14V	AGGATGACGACCC	.	254	102	181	0	.	26	10	16	0	0
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71969033	71969033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPA1-153	NM_021129	exon8	c.A653T	p.D218V	ATAATATCAATGG	.	74	28	84	0	.	489	281	208	0	0
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72434451	72434451	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS14-232	NM_080722	exon2	c.C222T	p.P74P	GCCACCCACACTA	.	75	32	64	0	.	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73553114	73553114	+	Silent	SNP	G	G	A	rs142788731	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDH23-563	NM_022124	exon46	c.G6429A	p.T2143T	GCTAACGGTGGTG	.	196	84	147	0	G|0.999;A|0.001	0	0	0	0	0
SYNPO2L	79933	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75407283	75407283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_001114133	exon4	c.G2127A	p.M709I	GGGAGCCATTGGA	.	35	14	23	0	.	0	0	0	0	0
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75408109	75408109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_001114133	exon4	c.T1301C	p.V434A	GGGAGCACAGCTG	.	20	8	19	0	.	2	0	2	0	0
ZSWIM8	23053	hgsc.bcm.edu;bcgsc.ca	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015037	exon24	c.5093delC	p.S1698fs	CCCGCTCCCCCCC	.	217	74	126	1	.	0	0	0	0	0
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75566103	75566103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon6	c.T1378C	p.Y460H	GGGGATACTCCTC	.	92	40	61	0	.	17	6	11	0	0
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567679	75567679	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon3	c.G468A	p.L156L	GTCTAGCAGTTCC	.	191	74	147	0	.	16	10	6	0	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79581401	79581401	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon15	c.G2841A	p.W947X	CTTGGGCCAGGTC	.	68	29	47	0	.	7	4	3	0	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79613277	79613277	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon5	c.C699T	p.L233L	ACTCAGGAGCCGG	.	41	14	29	0	.	10	3	7	0	0
ZMIZ1	57178	hgsc.bcm.edu;bcgsc.ca	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZMIZ1-292	NM_020338	exon25	c.3144delC	p.D1048fs	TCTGGACCCCCCC	.	220	108	159	1	.	0	0	0	0	0
TMEM254	80195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81838509	81838510	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001270370	exon1	c.54_55del	p.18_19del	CTGGTTCACAGTC	.	89	24	74	0	.	0	0	0	0	0
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81927056	81927056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANXA11-91	NM_145868	exon6	c.G575T	p.G192V	ATGGTGCCTCGGC	.	108	41	79	0	.	44	14	29	0	1
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88469694	88469694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDB3-92	NM_001171610	exon9	c.C1133T	p.A378V	CAGTGGCCGCCTC	.	46	19	51	0	.	0	0	0	0	0
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88683197	88683197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMPR1A-1619	NM_004329	exon12	c.T1407A	p.D469E	CGAAGATATGCGT	.	240	101	160	0	.	26	15	11	0	0
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96006241	96006241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLCE1-229	NM_016341	exon8	c.C2959T	p.H987Y	TTATTGCACTTCG	.	202	111	187	0	.	5	2	3	0	0
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97393407	97393407	+	Splice_Site	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALDH18A1-117	NM_002860	exon7	c.559-1G>C	.	CAAAATCTAAAAG	.	130	64	86	0	.	0	0	0	0	0
ANKRD2	26287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99338087	99338087	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD2-90	NM_001129981	exon3	c.A361T	p.K121X	CGGAAGAAACGCA	.	152	62	131	2	.	0	0	0	0	0
HPS1	3257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100202968	100202968	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HPS1-91	NM_000195	exon3	c.C30T	p.G10G	CTCTGCGCCCTCA	.	201	72	142	0	.	54	26	28	0	0
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101594287	101594287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCC2-91	NM_000392	exon24	c.G3409A	p.V1137I	GTATCTGTTCAGG	.	228	94	155	0	.	0	0	0	0	0
LDB1	8861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103867930	103867930	+	Missense_Mutation	SNP	C	C	T	rs141161148	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDB1-289	NM_001113407	exon11	c.G1156A	p.A386T	TGTTGGCGCCCAG	.	188	75	154	1	C|0.999;T|0.001	82	37	45	0	0
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103900009	103900009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPRC1-227	NM_015062	exon5	c.G1744A	p.A582T	GCCCAAGCCAGCC	.	239	98	197	0	.	22	10	12	0	0
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	10	104679763	104679763	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNNM2-515	NM_199076	exon1	c.1526delC	p.T509fs	ACTGTACCCCCCT	.	207	93	154	1	.	0	0	0	0	0
NEURL	9148	hgsc.bcm.edu	37	10	105344837	105344837	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEURL-226	NM_004210	exon4	c.C1194A	p.I398I	CGACATCCTGGGC	.	21	14	0	0	.	2	2	0	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105750547	105750547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLK-549	NM_014720	exon2	c.C265T	p.P89S	GATCACCCAAATA	.	83	35	88	0	.	44	25	19	0	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	106675687	106675687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SORCS3-99	NM_014978	exon3	c.G792C	p.R264S	CAAAAGGAAGGTA	.	226	12	208	0	.	0	0	0	0	0
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633180	111633180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	XPNPEP1-94	NM_020383	exon16	c.G1397A	p.G466D	GTGGTGCCATCCC	.	197	81	147	1	.	4	3	1	0	0
ADRA2A	150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	112838493	112838493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADRA2A-90	NM_000681	exon1	c.A739G	p.S247G	CCACCCAGCCGCC	.	43	16	21	1	.	0	0	0	0	0
TCF7L2	6934	broad.mit.edu;bcgsc.ca	37	10	114711348	114711348	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCF7L2-586	NM_001198526	exon3	c.C363G	p.L121L	ATCGCTCTCGCCC	.	167	73	118	2	.	11	5	6	0	0
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115891096	115891096	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf118-92	NM_018017	exon13	c.1912-1G>T	.	ACTTTCCTGAATA	.	96	44	58	0	.	0	0	0	0	0
RGS10	6001	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121259635	121259635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS10-226	NM_001005339	exon5	c.A536T	p.Y179F	GTGTTATAAATTC	.	34	17	31	1	.	16	12	4	0	0
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123324025	123324025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR2-2607	NM_001144914	exon3	c.A445G	p.N149D	TGTTGTTACTGTT	.	128	55	91	0	.	0	0	0	0	0
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	124909596	124909596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMX2-90	NM_005519	exon2	c.C779T	p.S260L	ACCTCTCGGCCTT	.	74	29	14	0	.	1	0	1	0	0
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127555708	127555708	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX32-290	NM_018180	exon2	c.G327A	p.Q109Q	CCCGTGCTGGTAG	.	138	53	116	0	.	35	19	16	0	0
PWWP2B	170394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134219477	134219477	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PWWP2B-90	NM_001098637	exon2	c.G1473A	p.G491G	CGTGGGGGACATC	.	659	431	263	1	.	131	41	89	1	0
GPR123	84435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134942688	134942688	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR123-90	NM_001083909	exon7	c.C1356T	p.R452R	CTCGCGCACAGAC	.	236	114	66	1	.	0	0	0	0	0
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135086884	135086884	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAM8-90	NM_001164489	exon6	c.C447T	p.G149G	CCGTCCGCCCTCG	.	242	100	114	0	.	0	0	0	0	0
PHRF1	57661	broad.mit.edu	37	11	610978	610978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHRF1-22	NM_020901	exon17	c.G4699A	p.E1567K	ATGCAGGAGCGTG	.	133	3	181	0	.	11	11	0	0	0
DRD4	1815	hgsc.bcm.edu	37	11	637463	637463	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DRD4-90	NM_000797	exon1	c.G159A	p.S53S	GAACTCGCTCGTG	.	26	19	2	0	.	2	0	2	0	0
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	686974	686974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DEAF1-90	NM_021008	exon5	c.C688T	p.Q230X	CCCCCTGCTTGAT	.	116	76	166	1	.	8	6	2	0	0
MUC2	4583	bcgsc.ca	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC2-90	NM_002457	exon30	c.C5114T	p.T1705I	CCACCACTACGGT	.	97	12	102	2	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2034G	p.V678V	GGGCGTACAGCTC	.	117	16	66	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	107	14	56	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	96	9	50	0	.	0	0	0	0	0
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510498	5510498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR52D1-68	NM_001005163	exon1	c.G562A	p.A188T	GGCATTGCCCGAC	.	67	53	90	0	.	0	0	0	0	0
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566347	6566347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNHD1-24	NM_144666	exon21	c.C4178T	p.A1393V	TGCATGCTGTGAG	.	172	134	186	0	.	0	0	0	0	0
LDHA	3939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18428915	18428915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDHA-650	NM_001165415	exon7	c.T817G	p.C273G	CTGATCTGTGATT	.	46	29	67	1	.	1655	26	1629	0	0
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18728522	18728522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF22-140	NM_173588	exon21	c.T3519A	p.N1173K	GATTTCATTCCGA	.	121	96	152	0	.	1	1	0	0	0
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18765655	18765655	+	Silent	SNP	C	C	T	rs150000507	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN5-229	NM_032781	exon4	c.G189A	p.S63S	GGGCGGCGAGGGA	.	42	26	69	0	C|0.999;T|0.001	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	7	7	0	0	C|0.748;A|0.252	0	0	0	0	0
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC73-91	NM_001008391	exon16	c.1913delA	p.E638fs	ACAGGATTTTTTT	.	58	45	69	0	.	0	0	0	0	0
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47701524	47701524	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGBL2-92	NM_024783	exon14	c.2016+1G>A	.	TTTTTACCTTCAT	.	32	23	43	0	.	0	0	0	0	0
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310506	56310506	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001005245	exon1	c.T228C	p.N76N	GGTTGCATTTGAT	.	102	77	157	0	.	0	0	0	0	0
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61099071	61099071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DDB1-661	NM_001923	exon2	c.G154A	p.V52I	CTTTGACGGGCCG	.	91	18	142	0	.	88	59	29	0	0
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61723382	61723382	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BEST1-90	NM_004183	exon4	c.T440A	p.V147D	CCGCAGTCTACAA	.	139	95	67	0	.	3	0	3	0	0
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62931536	62931536	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A25-72	NM_199352	exon9	c.T1404G	p.A468A	TCCAGTAGCTCTT	.	152	116	236	0	.	0	0	0	0	0
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368345	64368345	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A12-91	NM_144585	exon9	c.C1533T	p.A511A	CCTGGCCGCACTG	.	37	33	52	0	.	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu	37	11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEN1-3017	NM_130800	exon10	c.1561delC	p.R521fs	GCTTCCGGGGGGG	.	25	18	24	1	.	0	0	0	0	0
ATG2A	23130	bcgsc.ca	37	11	64665394	64665394	+	Silent	SNP	T	T	C	rs61741079	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG2A-69	NM_015104	exon35	c.A4911G	p.E1637E	TACGCCTTCGGCC	.	35	4	28	0	T|0.906;C|0.094	22	22	0	0	0
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67817504	67817504	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCIRG1-227	NM_006019	exon17	c.2089delG	p.G697fs	AAGGCAGGGGGCC	.	59	35	79	0	.	0	0	0	0	0
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67938597	67938597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUV420H1-228	NM_017635	exon9	c.A862T	p.T288S	ATGCTGTATCTCG	.	59	42	86	0	.	13	0	13	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945404	72945404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C200T	p.A67V	GGAATGCGTCCAC	.	217	105	164	0	.	58	20	38	0	0
P2RY2	5029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945486	72945486	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C282A	p.A94A	CTACGCCCGCGGC	.	151	75	107	0	.	12	12	0	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945487	72945487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C283T	p.R95C	TACGCCCGCGGCG	.	150	74	107	0	.	12	12	0	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945489	72945489	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C285T	p.R95R	CGCCCGCGGCGAC	.	150	72	105	0	.	13	13	0	0	0
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76169377	76169377	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf30-232	NM_020193	exon5	c.G396A	p.V132V	TCCAGTGCCTGCA	.	60	43	101	0	.	2	0	2	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	27	26	0	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	26	0	0	0	.	0	0	0	0	0
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93488407	93488407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf54-90	NM_014039	exon6	c.A362G	p.H121R	GTGAACACAAGCC	.	72	53	98	0	.	12	0	12	0	0
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94134121	94134121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR83-92	NM_016540	exon1	c.A293G	p.K98R	TGGTTCTTGAAGA	.	111	90	177	0	.	0	0	0	0	0
PIH1D2	120379	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111943748	111943748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIH1D2-69	NM_001082619	exon2	c.C151A	p.Q51K	AAAGCTGTGGTTC	.	22	16	36	0	.	0	0	0	0	0
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953575	111953578	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGAG	AGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf57-155	NM_001082969	exon6	c.761_764del	p.254_255del	GGAAAAAGAGAGA	.	31	23	41	0	.	0	0	0	0	0
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111957633	111957633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHD-226	NM_003002	exon1	c.G2A	p.C1Y	ACGAGATGGCGGT	.	114	85	189	0	.	38	4	34	0	0
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117153198	117153198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF214-90	NM_207343	exon12	c.C1791G	p.I597M	ACTTATCCAGTTG	.	83	60	152	0	.	20	2	18	0	0
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120180235	120180235	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POU2F3-92	NM_001244682	exon10	c.G1014A	p.E338E	AAAGGAGAAGCGA	.	110	69	158	0	.	0	0	0	0	0
GRIK4	2900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120531058	120531058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRIK4-92	NM_014619	exon1	c.C31T	p.L11F	GTGCTGCTTCCTG	.	39	30	60	0	.	5	1	4	0	0
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121016701	121016701	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECTA-225	NM_005422	exon11	c.C3981T	p.C1327C	GAACTGCCTGTTT	.	64	38	96	0	.	1	0	1	0	0
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129754659	129754659	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFRKB-93	NM_006165	exon5	c.C798G	p.T266T	ATCCGTGGTTGAA	.	48	36	80	0	.	0	0	0	0	0
NCAPD3	23310	broad.mit.edu;bcgsc.ca	37	11	134048719	134048719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAPD3-229	NM_015261	exon21	c.A2672G	p.H891R	TTACAGTGGTCAG	.	123	8	170	1	.	0	0	0	0	0
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134147638	134147638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L3-69	NM_001080407	exon3	c.C194T	p.S65F	ATCGATCTGTGGG	.	59	47	107	0	.	0	0	0	0	0
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A	rs202239114		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L2-25	NM_138342	exon12	c.G1195A	p.A399T	TGGGACGCCCTCA	.	102	81	130	0	G|0.999;A|0.001	0	0	0	0	0
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	431710	431710	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM5A-227	NM_001042603	exon17	c.C2299T	p.L767L	CTTCCAGCATTAC	.	11	11	22	0	.	5	0	5	0	0
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4479600	4479600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF23-660	NM_020638	exon3	c.A665G	p.D222G	AATGGGTCACTGG	.	85	69	79	0	.	0	0	0	0	0
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575152	6575152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAMP1-90	NM_014231	exon3	c.A144G	p.I48M	CACACGTATGATG	.	61	51	86	1	.	5	0	5	0	0
NCAPD2	9918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6626132	6626132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAPD2-660	NM_014865	exon10	c.G1126C	p.V376L	CATGATGTCAACT	.	151	116	203	2	.	21	3	18	0	0
GNB3	2784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6954905	6954905	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNB3-227	NM_002075	exon10	c.A855T	p.L285L	CCTACTATTCGCT	.	125	95	134	0	.	2	0	2	0	0
CLEC4C	170482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7898983	7898983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLEC4C-93	NM_130441	exon3	c.C68T	p.S23F	GCCATGGACCAGA	.	33	26	88	1	.	0	0	0	0	0
RIMKLB	57494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8926136	8926136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020734	exon7	c.T917C	p.L306P	CCTCCCTTCTACC	.	96	75	118	0	.	2	1	1	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10532370	10532370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199805	exon9	c.G170A	p.C57Y	ATGAAGCAGCAGA	.	48	40	90	0	.	0	0	0	0	0
CSDA	8531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10856704	10856704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSDA-586	NM_003651	exon7	c.C824T	p.A275V	AGTTGTGCTCCCT	.	96	65	123	0	.	93	13	78	1	1
TAS2R19	259294	bcgsc.ca	37	12	11174416	11174416	+	Missense_Mutation	SNP	A	A	G	rs112900131	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAS2R19-91	NM_176888	exon1	c.T755C	p.L252P	GTCCTAAGATTCC	.	151	21	223	7	A|0.997;G|0.003	0	0	0	0	0
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12483292	12483292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MANSC1-90	NM_018050	exon4	c.T965G	p.F322C	TCTGTAAACGGTA	.	79	63	144	0	.	6	6	0	0	0
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12510415	12510415	+	Missense_Mutation	SNP	G	G	C	rs151180790	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOH12CR1-91	NM_058169	exon1	c.G30C	p.E10D	GGCCGAGAGCCGA	.	161	107	215	1	G|1.000;A|0.000	6	0	6	0	0
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13367530	13367530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EMP1-90	NM_001423	exon5	c.C379T	p.Q127X	GGAACGCAGTATC	.	108	85	138	0	.	11	11	0	0	0
ABCC9	10060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22069967	22069967	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCC9-96	NM_005691	exon4	c.C477T	p.G159G	GTCCAAGCCAGAC	.	63	45	92	1	.	5	5	0	0	0
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	23818387	23818387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOX5-655	NM_006940	exon7	c.G922A	p.A308T	ATCCAGCCTTATA	.	42	33	66	0	.	0	0	0	0	0
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29446360	29446360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAR2-90	NM_018099	exon3	c.A317G	p.N106S	GTACAAACATAAT	.	80	34	72	0	.	0	0	0	0	0
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32996207	32996207	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKP2-92	NM_004572	exon6	c.C1419T	p.G473G	CACCGCGCCCGGC	.	44	19	35	0	.	0	0	0	0	0
TMEM117	84216	bcgsc.ca	37	12	44238546	44238546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM117-90	NM_032256	exon2	c.C92T	p.A31V	TATTTGCGGAGGA	.	119	40	96	3	.	4	3	1	0	0
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46591521	46591521	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A1-518	NM_030674	exon16	c.A1344T	p.K448N	AGTTCCTTTATCT	.	82	41	79	0	.	1	0	1	0	0
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46756130	46756130	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A2-226	NM_018976	exon15	c.T1359A	p.L453L	AGAAGGAAGAATA	.	125	45	103	0	.	24	14	10	0	0
PCED1B	91523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	47629462	47629462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138371	exon2	c.616delA	p.K206fs	GCACGTAAACATA	.	91	32	69	0	.	0	0	0	0	0
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48383041	48383041	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_001844	exon18	c.T1092A	p.G364G	GCCAGGACCACCA	.	127	46	105	0	.	0	0	0	0	0
COL2A1	1280	hgsc.bcm.edu;bcgsc.ca	37	12	48391429	48391429	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_001844	exon7	c.491delC	p.P164fs	GGACCAGGGGGGC	.	146	57	96	2	.	0	0	0	0	0
ADCY6	112	hgsc.bcm.edu	37	12	49177012	49177012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCY6-90	NM_020983	exon2	c.C206A	p.A69D	ATGAAGGCGTCAT	.	55	22	5	0	.	0	0	0	0	0
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNT1-1083	NM_005430	exon4	c.854delC	p.S285fs	CGCCCTCCCCCCA	.	133	58	34	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49416426	49416426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon51	c.A16285G	p.T5429A	TGATGGTGCCAAT	.	297	34	236	0	.	43	39	3	1	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49437705	49437705	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon22	c.G5265A	p.Q1755Q	TCGCCGCTGTTGC	.	212	92	161	0	.	4	2	2	0	0
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49491821	49491821	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LMBR1L-227	NM_018113	exon16	c.G1308A	p.V436V	GAGGAACACAATG	.	150	48	95	0	.	16	6	10	0	0
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50725578	50725578	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM186A-68	NM_001145475	exon6	c.T6723C	p.L2241L	TTGACTAAGATTC	.	62	24	45	0	.	0	0	0	0	0
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50867901	50867901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP4-91	NM_052879	exon15	c.C1787T	p.A596V	GTACTGCTTCACC	.	205	81	149	0	.	15	7	8	0	0
KRT84	3890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52777465	52777465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRT84-91	NM_033045	exon2	c.C664T	p.R222W	GCCTCCGCAGGTT	.	92	50	94	1	.	0	0	0	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53673526	53673526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ESPL1-228	NM_012291	exon12	c.C2375T	p.A792V	TGCAGGCTCTGGA	.	71	28	37	0	.	0	0	0	0	0
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55523992	55523992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR9K2-69	NM_001005243	exon1	c.G440A	p.R147H	ATGACCGCTTTAT	.	86	32	108	0	.	0	0	0	0	0
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56397807	56397807	+	Missense_Mutation	SNP	C	C	T	rs76442086		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUOX-90	NM_000456	exon6	c.C634T	p.P212S	CCCAACCCTATCT	.	241	94	209	0	.	26	14	12	0	0
ANKRD52	283373	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	56638934	56638934	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.G2445C	p.P815P	CGAAAACGGGCTG	.	197	85	146	0	.	5	5	0	0	0
CS	1431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56676360	56676360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CS-226	NM_004077	exon6	c.G432C	p.R144S	AGCTGCCCTCTTT	.	249	93	205	0	.	347	187	160	0	0
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56994876	56994876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAZ2A-22	NM_013449	exon22	c.G4307A	p.C1436Y	CCTGAGCACATCT	.	213	99	159	0	.	0	0	0	0	0
NACA	4666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57113354	57113354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NACA-254	NM_001113203	exon4	c.G1831A	p.D611N	CAGGGTCAGCACT	.	60	32	48	0	.	1	1	0	0	0
HSD17B6	8630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57167811	57167811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSD17B6-92	NM_003725	exon2	c.G175A	p.A59T	CTGGCTGCGTGTC	.	220	102	165	0	.	0	0	0	0	0
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397418	57397418	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB39-135	NM_014830	exon2	c.C1284T	p.I428I	GACAATGATGTTG	.	94	47	72	0	.	2	2	0	0	0
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493582	57493582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAT6-849	NM_001178079	exon15	c.T1712C	p.I571T	ATGGTGATGCCCC	.	279	136	191	0	.	135	64	71	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57560791	57560791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1-596	NM_002332	exon18	c.A2876G	p.D959G	TGGATGACGACTG	.	163	72	102	1	.	12	4	8	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57579466	57579466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1-596	NM_002332	exon41	c.C6616T	p.R2206C	TCAGAGCGCACCA	.	137	70	50	0	.	23	13	10	0	0
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62783220	62783220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP15-1084	NM_001252078	exon12	c.G1483A	p.V495I	AAAGTGGTTGTCC	.	32	15	30	0	.	1	0	1	0	0
AVPR1A	552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	63544037	63544037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AVPR1A-946	NM_000706	exon1	c.G580A	p.V194M	TGTTCACCTCGAT	.	249	109	169	2	.	2	2	0	0	0
WIF1	11197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65471560	65471560	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WIF1-1110	NM_007191	exon3	c.C363T	p.V121V	CAGAGGGACATTG	.	174	73	151	1	.	0	0	0	0	0
MSRB3	253827	broad.mit.edu;bcgsc.ca	37	12	65857056	65857056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSRB3-515	NM_198080	exon6	c.G533A	p.G178D	AGGGAGGCAGTGG	.	117	56	95	2	.	1	1	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRIP1-494	NM_001178074	exon16	c.1887delG	p.G629fs	AAGGGGCCCCCCG	.	74	29	62	0	.	0	0	0	0	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67696266	67696266	+	Silent	SNP	G	G	A	rs144692083	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAND1-516	NM_018448	exon8	c.G1164A	p.E388E	TGAAGAGAATGTA	.	136	60	137	0	G|1.000;C|0.000	74	41	33	0	0
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68051174	68051174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYRK2-861	NM_006482	exon3	c.T487A	p.Y163N	AAGCAATACATGC	.	82	40	63	0	.	15	7	8	0	0
FRS2	10818	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69968573	69968573	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRS2-658	NM_001042555	exon10	c.G1365A	p.T455T	AAAAACGCCTACA	.	180	71	146	1	.	28	9	18	1	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78334110	78334110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAV3-279	NM_014903	exon2	c.C255G	p.D85E	CACTGACTGGGCC	.	118	56	87	0	.	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80658922	80658922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173591	exon19	c.C2129T	p.A710V	CTCTTGCCCACTA	.	122	48	95	0	.	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80665446	80665446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173591	exon23	c.G2510A	p.G837E	CAGAGGGAAAAGA	.	179	83	141	0	.	0	0	0	0	0
METTL25	84190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82780603	82780603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032230	exon2	c.T281C	p.I94T	CCAAAATATTTTG	.	41	14	21	0	.	7	5	2	0	0
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93793069	93793069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUDT4-90	NM_199040	exon5	c.A460T	p.N154Y	AATGGAAATTCTA	.	313	38	230	0	.	90	90	0	0	0
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94725525	94725525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC41-90	NM_016122	exon14	c.A1658G	p.Y553C	TGATTGTACTTTT	.	84	26	71	0	.	7	3	4	0	0
NTN4	59277	broad.mit.edu	37	12	96077421	96077421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTN4-92	NM_021229	exon6	c.G1247A	p.S416N	CCATTGCTGGGGT	.	185	6	130	0	.	29	29	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	13	8	0	0	A|0.273;G|0.727	4	0	4	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	19	8	0	0	C|0.752;T|0.248	4	2	2	0	0
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99061321	99061321	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APAF1-229	NM_181868	exon10	c.C1393T	p.Q465X	CAGTTTCAGAGAT	.	88	45	71	1	.	2	2	0	0	0
CHST11	50515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105150884	105150884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST11-90	NM_018413	exon3	c.G362A	p.C121Y	TCTACTGCTACGT	.	255	103	176	1	.	37	17	19	0	1
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109959270	109959270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE3B-660	NM_130466	exon21	c.T2278C	p.Y760H	AGGCTGTACCCCT	.	133	64	145	0	.	32	14	18	0	0
MMAB	326625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109998890	109998890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MMAB-90	NM_052845	exon7	c.C539T	p.S180L	AGCGCCGAGCTGA	.	117	57	92	0	.	39	24	15	0	0
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110221440	110221440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV4-94	NM_021625	exon16	c.G2602A	p.D868N	GGGCGTCATCAGT	.	77	7	70	0	.	1	1	0	0	0
FAM216A	29902	hgsc.bcm.edu	37	12	110906720	110906720	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_013300	exon1	c.G40C	p.G14R	GGTCTCGGCGCCG	.	30	16	1	0	.	3	2	1	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112171864	112171864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACAD10-92	NM_001136538	exon12	c.T1625C	p.V542A	TTCCCGTGCTGAG	.	98	36	69	0	.	0	0	0	0	0
DTX1	1840	bcgsc.ca	37	12	113496054	113496054	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DTX1-659	NM_004416	exon1	c.G57A	p.P19P	CCCACCGCAGAAC	.	324	142	208	3	.	0	0	0	0	0
PLBD2	196463	broad.mit.edu	37	12	113812652	113812652	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLBD2-68	NM_173542	exon5	c.C699A	p.T233T	CAAGACCAAGATC	.	85	6	57	0	.	513	512	1	0	0
RNFT2	84900	broad.mit.edu;bcgsc.ca	37	12	117273791	117273791	+	Silent	SNP	C	C	T	rs192187826	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001109903	exon9	c.C1059T	p.G353G	TGTGGGCGGAGTT	.	165	8	116	0	C|0.999;T|0.000	2	2	0	0	0
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	119554810	119554810	+	Missense_Mutation	SNP	G	G	A	rs189389386		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM4-2	NM_194286	exon4	c.G434A	p.R145H	AGCGACGCAGGTA	.	54	26	41	1	G|0.999;A|0.001	0	0	0	0	0
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121868110	121868110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM2B-638	NM_032590	exon23	c.T3992C	p.L1331P	TGCAGGAGTTTTT	.	57	27	55	0	.	26	9	17	0	0
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122248666	122248666	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD1B-86	NM_015048	exon5	c.G1815A	p.G605G	TGCTGGGCTTCTG	.	157	76	106	0	.	4	3	1	0	0
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122717402	122717402	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS33A-91	NM_022916	exon12	c.C1554T	p.L518L	CCCTGGGAGGATG	.	161	80	126	0	.	62	30	32	0	0
ZCCHC8	55596	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122958256	122958256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC8-90	NM_017612	exon14	c.G1912A	p.G638R	TGCCCCCATTGCT	.	104	42	108	1	.	9	6	3	0	0
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123679054	123679054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPHOSPH9-514	NM_022782	exon9	c.A1664G	p.D555G	GTATTGTCTTTTT	.	84	33	82	0	.	8	2	6	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124409717	124409717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH10-95	NM_207437	exon67	c.G11533A	p.V3845M	CGGGCCGTGACTG	.	382	164	284	2	.	1	1	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124856730	124856730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOR2-229	NM_006312	exon22	c.C2645A	p.A882D	TCAGCGGCCTCCG	.	71	41	2	0	.	68	33	35	0	0
AACS	65985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125550233	125550233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AACS-92	NM_023928	exon1	c.G103C	p.A35P	CGGGCGGCTGTGG	.	145	44	68	0	.	18	9	9	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	54	22	0	0	T|0.868;C|0.132	0	0	0	0	0
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	132401137	132401137	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK1-758	NM_003565	exon20	c.2072+1G>T	.	TGGCCGGTGAGTT	.	19	10	10	0	.	2	0	2	0	0
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28883025	28883025	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLT1-1406	NM_002019	exon28	c.C3675T	p.I1225I	GGTTTTGATTCTT	.	72	53	100	0	.	27	27	0	0	0
PDS5B	23047	bcgsc.ca	37	13	33232435	33232435	+	Silent	SNP	A	A	G	rs2301393	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDS5B-94	NM_015032	exon4	c.A372G	p.Q124Q	CCCACAATTCAAT	.	68	4	129	0	A|0.686;G|0.314	11	11	0	0	0
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33338706	33338706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDS5B-94	NM_015032	exon31	c.A3598C	p.K1200Q	AGTGACAAGAGAG	.	45	34	118	0	.	9	0	9	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262894	39262894	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM2-100	NM_207361	exon1	c.C1413T	p.S471S	CATCAGCGATGAG	.	69	62	82	0	.	0	0	0	0	0
SIAH3	283514	bcgsc.ca	37	13	46357696	46357696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIAH3-92	NM_198849	exon2	c.G632A	p.R211H	TTGAGGCGCCGAT	.	55	44	77	2	.	0	0	0	0	0
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49796459	49796459	+	Silent	SNP	A	A	T	rs202143577	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLNR-90	NM_001507	exon2	c.A1185T	p.G395G	CACTGGAGGAGAC	.	44	38	74	0	.	0	0	0	0	0
KPNA3	3839	hgsc.bcm.edu	37	13	50283733	50283733	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KPNA3-226	NM_002267	exon12	c.C1007A	p.S336X	GGGTGTGATAAGA	.	65	4	101	0	.	23	23	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77780870	77780870	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYCBP2-236	NM_015057	exon24	c.T3507C	p.C1169C	GATACTACATCTG	.	94	72	87	0	.	3	0	3	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99083455	99083455	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon18	c.G2064A	p.R688R	GCACCGGCTCATG	.	147	105	187	0	.	163	5	158	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99100570	99100570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon27	c.G3137C	p.X1046S	TGTATTGATGGCC	.	148	115	208	0	.	173	6	167	0	0
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103288650	103288650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPP2-92	NM_003291	exon13	c.A1586G	p.N529S	TTGGAAATAACCG	.	95	76	176	0	.	3	0	3	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103399586	103399586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146197	exon4	c.A3461G	p.Y1154C	CTGCTATACATTC	.	29	24	46	0	.	0	0	0	0	0
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115030673	115030673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDC16-226	NM_003903	exon17	c.C1561T	p.H521Y	CTTGGTCATTGCA	.	98	78	151	1	.	22	0	22	0	0
UPF3A	65110	hgsc.bcm.edu;broad.mit.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UPF3A-91	NM_023011	exon7	c.790delA	p.K264fs	AGATGCAAAAAAA	.	39	28	55	0	.	0	0	0	0	0
POTEG	404785	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	19573146	19573146	+	Splice_Site	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POTEG-1	NM_001005356	exon8	c.1242+2T>C	.	GAAAGGTATACTT	.	1895	270	1480	1	.	0	0	0	0	0
OR4K2	390431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	163	47	138	1	.	0	0	0	0	0
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20444355	20444355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4K15-69	NM_001005486	exon1	c.T678A	p.D226E	TGCAGATAGTGGC	.	126	60	122	0	.	0	0	0	0	0
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20666484	20666484	+	Silent	SNP	T	T	C	rs200553632	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR11G2-70	NM_001005503	exon1	c.T990C	p.L330L	TAGTCTTAGGAAC	.	75	38	49	0	T|0.999;G|0.000	0	0	0	0	0
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20924074	20924074	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APEX1-661	NM_080648	exon3	c.G60A	p.E20E	TATAGAGCCAGAG	.	26	12	18	0	.	0	0	0	0	0
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21109455	21109455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR6S1-70	NM_001001968	exon1	c.G396A	p.L132L	GTAGCGCAGAGGA	.	258	106	199	0	.	0	0	0	0	0
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23415765	23415765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS4-91	NM_001166269	exon10	c.C1061T	p.A354V	TGGAGGGCCCACC	.	120	51	91	0	.	13	11	2	0	0
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23504062	23504062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB5-91	NM_001144932	exon1	c.C29T	p.P10L	GGTAGCGGTCTCT	.	82	45	80	0	.	509	282	227	0	0
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23777326	23777326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199864	exon3	c.C350T	p.P117L	TGGAACCACTGGT	.	96	37	91	0	.	42	27	15	0	0
SLC22A17	51310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23821014	23821014	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A17-226	NM_016609	exon3	c.C318T	p.L106L	GATGAAGAGGATC	.	240	93	198	2	.	5	5	0	0	0
IL25	64806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23844931	23844931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL25-91	NM_022789	exon2	c.C376T	p.P126S	ATGGACCCCCGGG	.	197	84	162	1	.	0	0	0	0	0
MYH6	4624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23865566	23865566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH6-94	NM_002471	exon20	c.A2356G	p.I786V	TGATGATGCGGCT	.	73	34	67	1	.	0	0	0	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23872558	23872558	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH6-94	NM_002471	exon10	c.G897C	p.L299L	TTCACCCAGCAAC	.	101	44	86	0	.	0	0	0	0	0
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23894924	23894924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH7-94	NM_000257	exon20	c.T2266A	p.Y756N	ACTTGTACTGGTT	.	159	61	106	1	.	0	0	0	0	0
RNF31	55072	hgsc.bcm.edu;bcgsc.ca	37	14	24619809	24619809	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF31-90	NM_017999	exon8	c.1200delG	p.Q400fs	CCAGCAGGGGGAT	.	146	65	115	1	.	0	0	0	0	0
TM9SF1	10548	bcgsc.ca	37	14	24662159	24662159	+	Missense_Mutation	SNP	C	C	T	rs201569838		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TM9SF1-91	NM_001014842	exon3	c.G662A	p.R221H	TCACCACGGCGCC	.	288	152	206	3	C|0.999;T|0.001	159	72	86	0	1
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24718579	24718579	+	Silent	SNP	G	G	A	rs201811993		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGM1-91	NM_000359	exon15	c.C2394T	p.D798D	TCCAGCGTCTGAG	.	104	54	63	0	G|0.999;A|0.000	4	2	2	0	0
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCY4-93	NM_001198592	exon5	c.G663A	p.K221K	CTGGTGCTTCTTC	.	118	44	64	0	.	0	0	0	0	0
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35585883	35585883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP2R3C-227	NM_017917	exon2	c.C119G	p.S40C	CATTCGGAGTAAT	.	41	9	26	0	.	16	9	7	0	0
PAX9	5083	ucsc.edu;bcgsc.ca	37	14	37135761	37135761	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAX9-228	NM_006194	exon4	c.C726T	p.N242N	GGTGAACGGGTTG	.	311	126	197	2	.	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45644600	45644600	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FANCM-569	NM_020937	exon14	c.C2643T	p.D881D	TAATGACAGAAAT	.	37	13	40	0	.	2	2	0	0	0
FANCM	57697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45654431	45654431	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FANCM-569	NM_020937	exon18	c.G4527A	p.R1509R	AGCTAGGAAGTTT	.	221	92	229	2	.	0	0	0	0	0
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52182163	52182163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD6-524	NM_001267046	exon10	c.T970C	p.Y324H	CGCCTCTATATGA	.	88	41	79	0	.	1	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52478281	52478281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NID2-158	NM_007361	exon17	c.G3541A	p.V1181M	AATTCACGATCGT	.	139	5	76	0	.	0	0	0	0	0
SAMD4A	23034	hgsc.bcm.edu	37	14	55034812	55034812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SAMD4A-90	NM_015589	exon1	c.C178T	p.R60C	CTCGAACGCGAGG	.	20	9	4	0	.	6	3	3	0	0
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56103915	56103915	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KTN1-1147	NM_001079521	exon11	c.1550-1G>A	.	ATTACAGATTTAC	.	202	79	169	0	.	0	0	0	0	0
SGPP1	81537	broad.mit.edu;mdanderson.org	37	14	64194307	64194307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGPP1-90	NM_030791	exon1	c.A356G	p.Q119R	GCCAGCTGGCCCT	.	23	11	17	0	.	7	6	1	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644145	64644145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNE2-164	NM_182914	exon96	c.G17500A	p.E5834K	CAAAGTGAAGATC	.	209	91	180	0	.	18	12	6	0	0
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009141	65009141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSPA2-226	NM_021979	exon1	c.C1574T	p.A525V	AGGAGGCGGAGCG	.	151	61	125	0	.	40	22	18	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65249147	65249147	+	Nonsense_Mutation	SNP	G	G	T	rs200559187	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_000347	exon19	c.C4127A	p.S1376X	GCAGCCGAGAGGT	.	148	77	74	0	G|0.999;A|0.000	0	0	0	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65263322	65263322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_000347	exon10	c.G1294A	p.A432T	TCATTGCGGCCTT	.	100	43	73	0	.	0	0	0	0	0
MPP5	64398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67768822	67768822	+	Missense_Mutation	SNP	G	G	A	rs75595607	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPP5-91	NM_022474	exon6	c.G788A	p.R263H	AGGCTCGTGATAT	.	122	58	100	1	G|0.999;A|0.001	0	0	0	0	0
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70926261	70926261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAM21-92	NM_003813	exon2	c.2045delT	p.V682fs	GAGGAGTTTTTTT	.	371	148	238	0	.	0	0	0	0	0
PCNX	22990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71492916	71492916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNX-91	NM_014982	exon14	c.G3266A	p.S1089N	ATGGTAGCAGAAA	.	122	43	88	1	.	35	11	24	0	0
ACOT4	122970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74061813	74061813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACOT4-90	NM_152331	exon3	c.A721C	p.M241L	CTCTCAATGGCCT	.	143	58	123	1	.	3	1	2	0	0
TMED10	10972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75643179	75643179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMED10-90	NM_006827	exon1	c.A104G	p.H35R	GGCAGATGGAAGG	.	417	139	296	0	.	322	157	165	0	0
POMT2	29954	hgsc.bcm.edu	37	14	77786922	77786922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POMT2-91	NM_013382	exon1	c.G103A	p.A35T	CCTCAGCGGCCAC	.	40	25	0	0	.	1	0	1	0	0
SPTLC2	9517	broad.mit.edu;bcgsc.ca	37	14	78036740	78036740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTLC2-92	NM_004863	exon5	c.C743T	p.A248V	ACAAGAGCAGGAA	.	72	33	48	1	.	0	0	0	0	0
DIO2	1734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	80677760	80677760	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIO2-22	NM_001242503	exon1	c.56delT	p.F19fs	TTGGAGAAAAAAA	.	92	15	65	0	.	0	0	0	0	0
TSHR	7253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81557476	81557476	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSHR-1650	NM_000369	exon5	c.A456T	p.I152I	TGATATATTCTTT	.	34	18	48	0	.	0	0	0	0	0
FLRT2	23768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86089453	86089453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLRT2-94	NM_013231	exon2	c.C1595T	p.T532M	AGCAGACGACGTC	.	184	79	165	1	.	3	1	2	0	0
SMEK1	55671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91927933	91927933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMEK1-226	NM_032560	exon15	c.2144delA	p.K715fs	ACTTCCTTTTCCT	.	102	38	92	0	.	0	0	0	0	0
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92792243	92792243	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon2	c.C162A	p.V54V	ACGTGTCCTGCCA	.	98	41	96	0	.	0	0	0	0	0
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92909757	92909757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon7	c.C596T	p.T199M	GTCTGACGTGGTG	.	148	64	110	0	.	0	0	0	0	0
GOLGA5	9950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93277940	93277940	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLGA5-677	NM_005113	exon6	c.G1161A	p.Q387Q	ACGTCAGAATTTA	.	364	145	314	1	.	69	37	32	0	0
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93954014	93954014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020818	exon5	c.T94C	p.S32P	GTGGGCTCCTCAA	.	81	30	72	0	.	0	0	0	0	0
SERPINA6	866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94772527	94772527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA6-653	NM_001756	exon4	c.A913G	p.T305A	AGATGGTGACCTT	.	132	69	102	0	.	0	0	0	0	0
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95088767	95088767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA3-653	NM_001085	exon4	c.C1007T	p.A336V	AGGAAGCCTTCAC	.	128	52	90	0	.	41	24	17	0	0
SYNE3	161176	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95932517	95932517	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152592	exon3	c.C378T	p.Y126Y	CCAGCGGTAGAAC	.	79	36	66	1	.	1	1	0	0	0
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	97027050	97027050	+	Splice_Site	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAPOLA-68	NM_032632	exon20	c.2067+2T>C	.	CAAAGGTATACTA	.	140	51	156	1	.	1	0	1	0	0
BCL11B	64919	broad.mit.edu;mdanderson.org	37	14	99640941	99640941	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon4	c.G2232T	p.S744S	CTCGGACGAGTGC	.	54	20	11	0	.	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	99641025	99641025	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon4	c.G2148A	p.A716A	CGACGCCGCGTAG	.	119	48	29	0	.	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	99697775	99697775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon3	c.547delC	p.L183fs	ACGGCAGGGGGAG	.	185	57	38	0	.	0	0	0	0	0
SLC25A47	283600	mdanderson.org	37	14	100793571	100793571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC25A47-91	NM_207117	exon4	c.C191T	p.S64F	CGGTGTCCCTGGT	.	47	16	24	1	.	0	0	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102476260	102476260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon30	c.C6058T	p.P2020S	ATGAACCCTGGCT	.	166	75	146	0	.	63	39	24	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	102516785	102516785	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon78	c.T13826A	p.V4609D	TACCTGTCTACCT	.	138	65	115	0	.	2	0	2	0	0
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102807679	102807680	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF839-91	NM_018335	exon8	c.1947_1948del	p.649_650del	AGTAAATGTGACT	.	273	86	190	0	.	0	0	0	0	0
CINP	51550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102816363	102816363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CINP-178	NM_001177611	exon4	c.A374T	p.E125V	AGCTTTTCCATTT	.	109	54	88	0	.	89	47	42	0	0
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102931570	102931570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECPR2-92	NM_001172631	exon17	c.C3733T	p.P1245S	ACTCAGCCTCTCA	.	179	79	142	0	.	14	7	7	0	0
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103999082	103999082	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT61A-90	NM_152307	exon3	c.C495T	p.C165C	CGTGTGCCGCAGT	.	256	124	96	0	.	5	4	1	0	0
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104206356	104206356	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R13B-227	NM_015316	exon12	c.C2397T	p.P799P	TGGTTCGGGGGAA	.	70	23	42	0	.	14	9	5	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	18	10	0	0	T|0.603;C|0.397	23	7	16	0	0
INF2	64423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105172438	105172438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INF2-492	NM_022489	exon6	c.768delG	p.E256fs	GGACGAGGAGGAG	.	262	116	159	0	.	0	0	0	0	0
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105350368	105350368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001112726	exon9	c.C1252T	p.R418C	AAGAAGCGCTCCC	.	164	65	89	0	.	0	0	0	0	0
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105352726	105352726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001112726	exon12	c.G2150A	p.S717N	CAGAGAGCAGCAG	.	185	72	56	0	.	24	14	10	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416057	105416057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHNAK2-47	NM_138420	exon7	c.A5731G	p.M1911V	TGGGCATATCCAC	.	270	116	190	0	.	0	0	0	0	0
TMEM121	80757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105995324	105995324	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM121-90	NM_025268	exon2	c.C153T	p.C51C	CGTGTGCTTCCTG	.	157	65	32	0	.	3	2	1	0	0
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369302	22369302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4M2-69	NM_001004719	exon1	c.T727C	p.Y243H	ACCTGCTATTCCC	.	488	72	430	0	.	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921082	24921082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_018958	exon1	c.G68A	p.G23D	GGCGTGGCGCCCC	.	48	25	4	0	.	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377252	28377252	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon81	c.T12564C	p.P4188P	CTTCATAGGCACT	.	257	114	252	0	.	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28408358	28408358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon69	c.C10628T	p.A3543V	TCATCCGCAATCA	.	73	34	57	0	.	11	5	6	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28443647	28443647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon50	c.T7888C	p.Y2630H	GAGGATAGCCTAC	.	127	55	106	0	.	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28473416	28473416	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon35	c.T5412C	p.L1804L	GAGCAGAAGGTCG	.	62	28	45	0	.	2	1	1	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29409295	29409295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APBA2-90	NM_005503	exon14	c.T2209C	p.F737L	GCCATGTTCAGGC	.	253	117	151	0	.	14	6	8	0	0
CHRFAM7A	89832	ucsc.edu;bcgsc.ca	37	15	30659681	30659681	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHRFAM7A-45	NM_139320	exon9	c.G660A	p.V220V	CACCGTCACCACC	.	1852	385	1366	3	.	2	2	0	0	0
CASC5	57082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40914476	40914476	+	Missense_Mutation	SNP	A	A	G	rs73394756	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASC5-660	NM_170589	exon11	c.A2092G	p.I698V	CATAATATAGTCT	.	67	32	49	0	A|0.994;C|0.006	5	2	3	0	0
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42059314	42059314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGA-522	NM_001164273	exon24	c.C9034T	p.P3012S	GTGATGCCTTGTT	.	196	87	174	1	.	12	5	7	0	0
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42149686	42149686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTBN5-91	NM_016642	exon51	c.C8266T	p.R2756C	GCAGACGCAGGGC	.	117	62	104	1	.	0	0	0	0	0
LRRC57	255252	bcgsc.ca	37	15	42837435	42837435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC57-90	NM_153260	exon5	c.C518T	p.S173F	CAGCAAGATATCT	.	49	25	35	1	.	32	16	16	0	0
SPG11	80208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44918706	44918706	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPG11-95	NM_025137	exon12	c.2068-1G>A	.	AACTTCCTAGGAA	.	46	22	35	0	.	0	0	0	0	0
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48054484	48054484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6D-138	NM_153617	exon8	c.G626A	p.R209H	CCCTTCGCACAAT	.	83	23	85	1	.	0	0	0	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48764789	48764789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon35	c.A4295G	p.D1432G	CCCATGTCGCATT	.	137	51	112	0	.	25	21	4	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48788314	48788314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon20	c.A2402T	p.D801V	TTTAGATCAGGTT	.	214	92	220	0	.	9	6	3	0	0
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49926737	49926737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DTWD1-226	NM_001144955	exon4	c.C413T	p.A138V	AGGTTGCACTCAT	.	131	49	114	0	.	0	0	0	0	0
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	51014348	51014350	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPPL2A-90	NM_032802	exon13	c.1298_1300del	p.433_434del	ATATGTAAGAAGA	.	29	14	28	0	.	0	0	0	0	0
CYP19A1	1588	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51514616	51514616	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CYP19A1-93	NM_031226	exon6	c.C558T	p.D186D	CAACACGTCCACA	.	383	206	327	2	.	9	6	3	0	0
DYX1C1	161582	ucsc.edu;bcgsc.ca	37	15	55790437	55790437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYX1C1-91	NM_001033560	exon2	c.A91G	p.T31A	CGTCCGTGTCTCT	.	227	99	175	3	.	3	1	2	0	0
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56032850	56032850	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRTG-92	NM_173814	exon2	c.A127T	p.K43X	GTTCTTTTACAAA	.	76	39	52	0	.	0	0	0	0	0
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	60803784	60803785	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORA-290	NM_134260	exon6	c.559_560del	p.187_187del	AAGCTGTCTCTCT	.	191	75	132	0	.	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63097938	63097938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN2-573	NM_015059	exon48	c.C6617T	p.A2206V	CTACTGCCAACCT	.	178	90	162	0	.	6	4	2	0	0
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63893575	63893575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL22-90	NM_203373	exon2	c.C434T	p.S145L	CGAAATCACCTCG	.	51	26	27	0	.	0	0	0	0	0
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63916523	63916523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC1-666	NM_003922	exon72	c.A13279G	p.S4427G	ATGTGCTGTTCTG	.	116	44	105	0	.	1	1	0	0	0
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65489585	65489585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CILP-97	NM_003613	exon9	c.G3039A	p.M1013I	ATAGAGCATCCCA	.	212	94	182	1	.	2	2	0	0	0
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65489631	65489631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CILP-97	NM_003613	exon9	c.A2993C	p.Q998P	TTGGGCTGGTCCC	.	186	71	139	0	.	1	1	0	0	0
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331288	69331288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOX5-136	NM_024505	exon9	c.A1463G	p.E488G	GCTATGAGTGGCA	.	163	80	119	0	.	0	0	0	0	0
BBS4	585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73029922	73029922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BBS4-90	NM_033028	exon16	c.G1554C	p.E518D	AAGAGAGAAATAA	.	59	24	50	0	.	20	9	11	0	0
STRA6	64220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74487774	74487774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRA6-90	NM_001199042	exon7	c.G583A	p.A195T	AGAGGGCAGCATA	.	101	35	79	0	.	6	6	0	0	0
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75498952	75498952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C15orf39-90	NM_015492	exon2	c.G563A	p.G188D	TGGATGGCACCTT	.	65	7	51	0	.	72	68	4	0	0
C15orf39	56905	bcgsc.ca	37	15	75499374	75499374	+	Missense_Mutation	SNP	G	G	A	rs111653297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C15orf39-90	NM_015492	exon2	c.G985A	p.A329T	CAGCAGGCAGCCC	.	147	58	112	3	G|0.500;A|0.500	28	13	15	0	0
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu	37	15	75586567	75586567	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145224	exon17	c.1919delC	p.A640fs	CCCCAGCCCCCCA	.	223	36	206	0	.	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75979767	75979767	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSPG4-229	NM_001897	exon3	c.C3639T	p.F1213F	CACGGAGAAGGCC	.	234	109	130	0	.	0	0	0	0	0
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78838004	78838004	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMA4-90	NM_001102667	exon7	c.G405A	p.L135L	ATTGCTGTACATT	.	124	57	105	0	.	230	108	122	0	0
C15orf37	283687	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	80215735	80215735	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	GAGCGGCTCCTCG	.	229	109	62	0	.	4	3	1	0	0
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81660598	81660598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC3-70	NM_001080532	exon3	c.C308T	p.A103V	ACCTCTGCACCTG	.	97	35	88	0	.	0	0	0	0	0
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82512116	82512116	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFTUD1-91	NM_024580	exon14	c.C1488A	p.L496L	TTCCTGGAGCACA	.	130	49	102	0	.	20	13	7	0	0
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85401392	85401392	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALPK3-337	NM_020778	exon6	c.G4029A	p.E1343E	AGAGGAGAAGTTC	.	110	47	81	1	.	1	0	1	0	0
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86810268	86810268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152336	exon12	c.T1661C	p.F554S	CCAAATTTGAGTC	.	112	45	115	0	.	0	0	0	0	0
POLG	5428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89864046	89864046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLG-228	NM_002693	exon18	c.G2932A	p.A978T	CAGCTGCCTCCTG	.	114	40	64	1	.	56	29	27	0	0
C15orf38-AP3S2	100526783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90378789	90378789	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001199058	exon10	c.C1143T	p.G381G	GAGATCGCCAATG	.	106	46	90	0	.	101	50	51	0	0
RCCD1	91433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91504901	91504901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCCD1-90	NM_001017919	exon8	c.C1033T	p.R345C	CCTCGCCGTGTGG	.	316	146	201	0	.	15	11	4	0	0
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	95013607	95013607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCTP2-93	NM_018349	exon20	c.G2406T	p.L802F	CTGTTTGATTCTG	.	69	29	54	0	.	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	98511297	98511297	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARRDC4-90	NM_183376	exon4	c.T576C	p.S192S	CACTTCTGGTCCA	.	50	15	37	0	.	5	3	2	0	0
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99250942	99250942	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGF1R-1490	NM_000875	exon2	c.C246T	p.T82T	CATTACCGAGTAC	.	360	150	256	2	.	23	14	9	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100514681	100514681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS17-228	NM_139057	exon22	c.T3214A	p.W1072R	GGTACCACCGCAT	.	185	82	132	0	.	0	0	0	0	0
ADAMTS17	170691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100533255	100533255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS17-228	NM_139057	exon20	c.A2947G	p.T983A	TCACCGTAGACCA	.	97	48	93	2	.	0	0	0	0	0
TM2D3	80213	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	102192528	102192528	+	Missense_Mutation	SNP	C	C	T	rs149437101		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TM2D3-91	NM_025141	exon1	c.G37A	p.A13T	ACAAGGCGCGGAG	.	135	44	53	1	A|0.000;C|1.000	39	39	0	0	0
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4F15-68	NM_001001674	exon1	c.A428G	p.Y143C	GTCTATACTTTTT	.	264	130	206	0	.	0	0	0	0	0
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	840346	840346	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHTF18-227	NM_022092	exon6	c.700-1G>A	.	TGCACAGCGGCGG	.	76	30	44	0	.	2	0	2	0	0
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1682360	1682360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020825	exon3	c.G688C	p.D230H	GACTTTGATCATG	.	123	53	71	0	.	0	0	0	0	0
MAPK8IP3	23162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1793368	1793368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK8IP3-1109	NM_015133	exon5	c.C635A	p.P212H	TGTTCCCCCTGGC	.	76	21	56	1	.	12	10	2	0	0
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1814309	1814309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK8IP3-1109	NM_015133	exon19	c.G2126T	p.C709F	TGTGGTGTGCCGC	.	194	83	38	0	.	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	10	4	0	0	C|0.615;G|0.385	0	0	0	0	0
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013252	2013252	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS2-90	NM_002952	exon4	c.A273G	p.S91S	GATCTCTGATTCC	.	147	56	135	0	.	10	8	2	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2052607	2052607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon6	c.G592A	p.D198N	CATTGTCCAGGTA	.	205	73	154	0	.	17	6	11	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2053060	2053060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon5	c.G397A	p.D133N	CCAGGTCCCCGAA	.	161	52	80	0	.	48	31	16	1	0
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2374440	2374440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA3-1015	NM_001089	exon6	c.C412A	p.P138T	TGAAGGGGTGCTC	.	71	34	42	0	.	31	14	17	0	0
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2487128	2487128	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.347-2A>T	.	CCCCGCAGTGTCT	.	65	26	46	0	.	9	0	9	0	0
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2487231	2487231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.T448C	p.W150R	TTCATCTGGCTCT	.	73	30	60	0	.	5	1	4	0	0
ATP6V0C	527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2564109	2564109	+	Missense_Mutation	SNP	C	C	G	rs147497038	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V0C-91	NM_001198569	exon2	c.C5G	p.S2C	ACATGTCCGAGTC	.	78	44	38	0	C|1.000;T|0.000	349	187	162	0	0
CEMP1	752014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580891	2580891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEMP1-23	NM_001048212	exon1	c.G184A	p.A62T	CCTCTGCCTTGAC	.	109	49	108	0	.	5	4	1	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2816678	2816678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM2-93	NM_016333	exon11	c.T6149A	p.I2050N	TTGCTATCCGCCG	.	233	98	183	0	.	210	100	109	1	0
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063682	3063682	+	Missense_Mutation	SNP	T	T	C	rs199692917		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.T319C	p.C107R	ACCACGTGTGTGG	.	238	75	206	0	T|0.999;C|0.001	0	0	0	0	0
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063792	3063792	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.C429T	p.I143I	CGCCATCATCCAG	.	179	66	162	0	.	0	0	0	0	0
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3545393	3545393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080524	exon1	c.A29G	p.E10G	TGCAGCTCAGAAA	.	92	34	71	0	.	0	0	0	0	0
VASN	114990	bcgsc.ca;mdanderson.org	37	16	4431929	4431929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASN-68	NM_138440	exon2	c.G1051A	p.A351T	TGCCCAGCCACCA	.	112	48	48	2	.	7	7	0	0	0
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004639	9004639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1124C	p.G375A	TTGTCCCCATCGA	.	68	32	78	0	.	37	18	19	0	0
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004658	9004658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1105A	p.A369T	CTACTGCCACATA	.	64	25	74	0	.	36	13	23	0	0
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	11272519	11272519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLEC16A-92	NM_015226	exon23	c.C3134T	p.A1045V	CATGTGCTGAGCC	.	28	13	14	0	.	25	15	10	0	0
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTAN1-90	NM_173474	exon10	c.T824A	p.L275X	TTTTTTAAAAACA	.	121	41	101	0	.	47	27	20	0	0
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15725252	15725252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0430-90	NM_014647	exon6	c.T1337C	p.V446A	AGAACCACTGTGG	.	138	64	96	0	.	0	0	0	0	0
MYH11	4629	hgsc.bcm.edu;bcgsc.ca	37	16	15802687	15802687	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH11-666	NM_001040113	exon42	c.5819delC	p.P1940fs	TCCTGTGGGGGGG	.	100	37	72	2	.	0	0	0	0	0
ARL6IP1	23204	hgsc.bcm.edu;bcgsc.ca	37	16	18805952	18805954	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTG	TTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARL6IP1-90	NM_015161	exon5	c.460_462del	p.154_154del	GTGGACTTGTTGT	.	556	244	454	1	.	0	0	0	0	0
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19051758	19051758	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC7-93	NM_024847	exon9	c.A1327C	p.T443P	CGTCTGACAATCC	.	45	20	39	0	.	0	0	0	0	0
GPRC5B	51704	ucsc.edu;bcgsc.ca	37	16	19883815	19883815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPRC5B-523	NM_016235	exon2	c.A353G	p.D118G	GTCTCGTCCTCCT	.	427	200	252	3	.	6	5	1	0	0
PDILT	204474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	20376740	20376740	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon10	c.1237+2T>A	.	ATACTTACAGAAC	.	98	44	74	0	.	0	0	0	0	0
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20396090	20396090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon3	c.A286T	p.I96F	AGCCGATCCCATT	.	120	45	87	0	.	0	0	0	0	0
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	22135022	22135022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VWA3A-1	NM_173615	exon16	c.1526delA	p.E509fs	TCTGTGAAAAAAG	.	118	36	85	0	.	0	0	0	0	0
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23424846	23424846	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COG7-90	NM_153603	exon10	c.A1332G	p.R444R	CTTCTTTCGTATG	.	210	93	165	2	.	53	18	35	0	0
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23481455	23481455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGA2-91	NM_015044	exon15	c.G1482A	p.R494R	TCCATTCCGGTCA	.	94	36	83	0	.	81	35	46	0	0
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555852	23555852	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G468A	p.R156R	GTGGTTCCGCAAG	.	25	10	22	0	.	23	10	13	0	0
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555917	23555917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G403A	p.G135R	CAGCTCCGGTCTT	.	46	25	36	0	.	31	24	7	0	0
ERN2	10595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23706207	23706207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERN2-322	NM_033266	exon17	c.C2086T	p.P696S	TGTCAGGCCCGGT	.	112	55	103	1	.	0	0	0	0	0
IL21R	50615	ucsc.edu;bcgsc.ca	37	16	27460153	27460153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL21R-660	NM_181079	exon10	c.C1232G	p.T411S	CATGCACCTGGCC	.	109	49	107	2	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27549248	27549248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTF3C1-94	NM_001520	exon4	c.G609T	p.K203N	ATCAACCCTGGAG	.	94	53	86	0	.	0	0	0	0	0
KIAA0556	23247	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27761402	27761402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0556-141	NM_015202	exon16	c.A3121G	p.T1041A	AACAGGACCCAGG	.	169	79	140	2	.	7	4	3	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28841942	28841942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_148414	exon9	c.G1041A	p.G347G	GGAGGGGAAGTAT	.	68	38	55	0	.	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28848085	28848085	+	Missense_Mutation	SNP	C	C	T	rs188659783		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_017492	exon23	c.C3176T	p.P1059L	TCCACCCCCCGGG	.	108	53	61	0	C|0.999;T|0.000	132	73	59	0	0
ATP2A1	487	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28913320	28913320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP2A1-93	NM_004320	exon16	c.C2237T	p.A746V	TAGCTGCTGTGGA	.	290	118	231	3	.	2	2	0	0	0
CD19	930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28943679	28943679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD19-92	NM_001178098	exon2	c.C101T	p.A34V	ATAACGCTGTGCT	.	92	48	58	0	.	0	0	0	0	0
CD19	930	ucsc.edu;bcgsc.ca	37	16	28946768	28946768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD19-92	NM_001178098	exon5	c.T839C	p.L280P	TAGTACTATGGCA	.	160	79	125	2	.	0	0	0	0	0
PAGR1	79447	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29827951	29827951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_024516	exon1	c.T105A	p.D35E	GGAGGATACCGGA	.	57	23	49	1	.	46	22	24	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994580	29994580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon12	c.C1187T	p.A396V	CTGAAGCCCGGGA	.	45	19	49	0	.	47	24	23	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994973	29994973	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon13	c.A1410G	p.R470R	CATCCGAACCGCC	.	57	27	55	0	.	0	0	0	0	0
TAOK2	9344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002105	30002105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon18	c.C2446A	p.L816M	CCCCAGCTGCGGC	.	22	10	41	1	.	2	2	0	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002194	30002194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon18	c.C2535T	p.S845S	CCAGAGCAAGATC	.	71	28	71	0	.	40	22	18	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002536	30002536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2797T	p.P933S	GGCTATCCTGCTC	.	160	61	94	0	.	46	20	26	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30002651	30002651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2912T	p.S971F	AGCCGTCTCTGCT	.	102	45	45	0	.	39	17	22	0	0
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30369775	30369775	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015527	exon9	c.C1917T	p.S639S	GGCCCGGGACCCA	.	94	45	45	0	.	56	27	29	0	0
ZNF771	51333	hgsc.bcm.edu	37	16	30429083	30429083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142305	exon3	c.C349T	p.R117W	GGCGAGCGGCCCT	.	7	5	0	0	.	3	2	1	0	0
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594019	30594019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF785-91	NM_152458	exon3	c.G1080A	p.W360X	GTGGATCCACCGA	.	102	40	77	0	.	8	0	8	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30745920	30745920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRCAP-94	NM_006662	exon31	c.C6713T	p.T2238I	AGCAGACTCATAT	.	204	87	171	0	.	16	8	8	0	0
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30964661	30964661	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ORAI3-68	NM_152288	exon2	c.C384T	p.N128N	GAGCAACATCCAC	.	199	70	172	0	.	74	55	19	0	0
SETD1A	9739	bcgsc.ca	37	16	30990658	30990658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD1A-93	NM_014712	exon14	c.C3551T	p.A1184V	CTCCAGCCACACC	.	148	71	38	1	.	19	9	10	0	0
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF668-585	NM_001172669	exon4	c.C1820G	p.A607G	TCGCTGGCACTCA	.	155	64	93	0	.	16	13	3	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31371245	31371245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITGAX-229	NM_000887	exon7	c.C566T	p.S189F	AGTTTTCCCTGAT	.	81	40	65	0	.	0	0	0	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31471222	31471222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARMC5-24	NM_024742	exon1	c.G377T	p.R126L	GCCTGCGCAAGAC	.	53	24	31	0	.	2	2	0	0	0
ARMC5	79798	broad.mit.edu	37	16	31477963	31477963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARMC5-24	NM_001105247	exon6	c.C2561T	p.A854V	AAGAGGCCGTGGG	.	197	8	53	1	.	12	12	0	0	0
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47581450	47581450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHKB-154	NM_000293	exon7	c.T701G	p.L234R	CAGAGCTACATTC	.	66	29	59	0	.	0	0	0	0	0
BRD7	29117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50368679	50368679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BRD7-90	NM_013263	exon7	c.A830G	p.E277G	GAGTCCTCTCTCT	.	61	25	66	1	.	74	50	24	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060004	57060004	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon5	c.G1149A	p.Q383Q	CGCCCAGCCATCG	.	31	27	51	1	.	4	0	4	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060099	57060099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon5	c.G1244A	p.C415Y	GTCTCTGCCTCCA	.	28	20	49	1	.	4	0	4	0	0
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57089359	57089359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon26	c.G3674A	p.C1225Y	CAGGCTGCAGCCT	.	103	87	138	1	.	4	2	2	0	0
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	57993956	57993956	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNGB1-137	NM_001297	exon10	c.C597T	p.R199R	CTGGGGGCGTCCT	.	9	7	14	0	.	0	0	0	0	0
CDH16	1014	ucsc.edu;bcgsc.ca	37	16	66950187	66950187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDH16-93	NM_004062	exon4	c.A275T	p.Y92F	AGCTGGTACTCTG	.	126	101	156	2	.	0	0	0	0	0
SLC12A4	6560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67980895	67980895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A4-91	NM_001145962	exon16	c.C2192T	p.S731F	ATGACAGAACCAA	.	62	48	83	2	.	20	5	15	0	0
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70503129	70503129	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUK-91	NM_145059	exon10	c.C858T	p.P286P	GAGGCCCCCAGAG	.	66	51	90	0	.	2	0	2	0	0
FUK	197258	hgsc.bcm.edu	37	16	70508769	70508769	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUK-91	NM_145059	exon18	c.C2232A	p.G744G	GGACGGCCGCCGG	.	47	39	4	0	.	3	0	3	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72822586	72822586	+	Frame_Shift_Del	DEL	G	G	-	rs66799632		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFHX3-72	NM_006885	exon10	c.9589delC	p.Q3197fs	GCTGCTGGGGGGG	.	111	50	53	0	.	0	0	0	0	0
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74922199	74922199	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR59-92	NM_030581	exon22	c.G2214T	p.R738R	CCGGAGCCGGCAA	.	130	57	105	0	.	35	17	18	0	0
ZFP1	162239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75200759	75200759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP1-92	NM_153688	exon3	c.T107G	p.V36G	TGGATGTGATGCT	.	167	56	130	0	.	12	7	5	0	0
CHST6	4166	hgsc.bcm.edu	37	16	75513043	75513043	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST6-90	NM_021615	exon3	c.C684A	p.T228T	GCCGTTGGTGCCC	.	98	42	0	0	.	0	0	0	0	0
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81181855	81181855	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD1L2-92	.	.	.	.	CGACCCGGGGACG	.	106	50	90	1	.	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	17	16	0	0	G|0.292;A|0.708	0	0	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	87445168	87445168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.C2748A	p.H916Q	GGCGCGGTGACCA	.	117	51	131	0	.	12	12	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87445179	87445179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2737T	p.A913S	CAGTGGCCCCGCA	.	131	61	140	0	.	10	10	0	0	0
ZNF469	84627	hgsc.bcm.edu;bcgsc.ca	37	16	88504203	88504203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001127464	exon2	c.10241delG	p.R3414fs	ACCTCAGGGGGGG	.	87	36	43	1	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	31	24	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	30	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	27	19	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	25	19	0	0	.	0	0	0	0	0
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZC3H18-69	NM_144604	exon12	c.2030delC	p.T677fs	CCAGGACCCCCCC	.	128	54	73	0	.	0	0	0	0	0
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu	37	16	88787611	88787611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142864	exon39	c.5631delG	p.K1877fs	CTCCTTCTTCCTT	.	29	10	23	0	.	0	0	0	0	0
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88787613	88787614	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142864	exon39	c.5628_5629del	p.1876_1877del	CCTTCTTCCTTCT	.	29	10	23	0	.	0	0	0	0	0
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88909119	88909119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNS-153	NM_000512	exon2	c.C239T	p.S80L	CATGGCGAGCACA	.	111	58	62	0	.	2	0	2	0	0
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPNE7-90	NM_014427	exon10	c.G1049A	p.R350H	AGAGACGCAGTTA	.	119	49	79	0	.	1	0	1	0	0
C17orf97	400566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	260403	260405	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C17orf97-91	NM_001013672	exon1	c.270_272del	p.90_91del	AAAAAGGAAGAAG	.	20	15	19	0	.	0	0	0	0	0
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3518689	3518689	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPK-69	NM_013276	exon6	c.C966T	p.N322N	GCCCCCGTTGAGT	.	156	121	215	0	.	1	1	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	6	6	0	0	C|0.015;A|0.985	0	0	0	0	0
NLGN2	57555	broad.mit.edu;bcgsc.ca	37	17	7311947	7311947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLGN2-90	NM_020795	exon1	c.G373A	p.D125N	TTCACCGACAACT	.	88	71	102	1	.	5	1	4	0	0
C17orf74	201243	broad.mit.edu	37	17	7329040	7329040	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C17orf74-90	NM_175734	exon1	c.A33G	p.R11R	CGTGAGATGTTGC	.	87	4	106	0	.	3	3	0	0	0
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7339882	7339882	+	Missense_Mutation	SNP	G	G	A	rs141257669	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM102-90	NM_178518	exon3	c.G584A	p.S195N	CGCACAGCTACGT	.	121	9	144	0	G|1.000;T|0.000	1	1	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TP53-70225	NM_000546	exon9	c.919+1G>T	.	TGCTTACCTCGCT	.	67	58	105	0	.	7	0	7	0	0
GUCY2D	3000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7919549	7919549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GUCY2D-319	NM_000180	exon18	c.G3165C	p.W1055C	TTTCTGGCTAGTG	.	65	41	102	1	.	0	0	0	0	0
ALOXE3	59344	broad.mit.edu;bcgsc.ca	37	17	8013790	8013790	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon9	c.C1410A	p.C470X	GTTTAGGCAGTGG	.	61	47	65	2	.	0	0	0	0	0
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017851	8017851	+	Nonsense_Mutation	SNP	G	G	A	rs141340759		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon6	c.C1027T	p.R343X	AGTATCGAACATT	.	159	121	275	1	.	0	0	0	0	0
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017917	8017917	+	Missense_Mutation	SNP	G	G	A	rs149284623		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon6	c.C961T	p.R321W	GGTACCGATTCCC	.	57	42	126	0	G|1.000;A|0.000	0	0	0	0	0
PIK3R5	23533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	8783988	8783988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R5-1146	NM_001142633	exon19	c.C2611T	p.P871S	TGATGGGCAGGCA	.	57	44	67	0	.	0	0	0	0	0
MYH13	8735	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10213064	10213064	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH13-6	NM_003802	exon34	c.C4740T	p.V1580V	CTCAATGACCTTG	.	67	48	127	2	.	0	0	0	0	0
DNAH9	1770	bcgsc.ca	37	17	11607687	11607687	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH9-168	NM_001372	exon25	c.G5319A	p.R1773R	AGACCGGCAGAAG	.	64	4	138	0	.	0	0	0	0	0
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16336945	16336945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV2-91	NM_016113	exon13	c.C2047T	p.R683W	AAGCAGCGGGCAG	.	88	68	133	0	.	92	9	83	0	0
CCDC144A	9720	hgsc.bcm.edu	37	17	16630989	16630989	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_014695	exon9	c.2040delA	p.T680fs	TGAAACAAAAAAG	.	442	104	638	0	.	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18022386	18022386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.G272A	p.R91H	AGATGCGCATGGG	.	161	123	137	0	.	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18025311	18025311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.C3197T	p.A1066V	CACTGGCTGCGTG	.	49	34	68	0	.	0	0	0	0	0
CCDC144B	284047	hgsc.bcm.edu	37	17	18491040	18491040	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC144B-70	.	.	.	.	TTTGTCTTTTTTG	.	407	118	555	0	.	0	0	0	0	0
CCDC144NL	339184	ucsc.edu;bcgsc.ca	37	17	20799304	20799304	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC144NL-90	NM_001004306	exon1	c.A30G	p.G10G	AGCCCCTCCCCGC	.	46	33	74	3	.	1	0	1	0	0
TMEM199	147007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26687565	26687565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM199-68	NM_152464	exon4	c.G389A	p.G130D	GACATGGTGGGAC	.	38	33	81	1	.	16	2	14	0	0
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27041696	27041696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAB34-227	NM_001144943	exon11	c.A916G	p.T306A	TGGCAGTTAGGTA	.	116	94	162	1	.	14	14	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29528059	29528059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NF1-3353	NM_001128147	exon10	c.T1067A	p.L356Q	AGAACCTGCTTTT	.	36	26	62	0	.	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29662047	29662047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NF1-3353	NM_001042492	exon40	c.C6004T	p.Q2002X	CTTGGGCAGGTAT	.	41	28	59	0	.	0	0	0	0	0
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30535210	30535210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RHOT1-93	NM_001033568	exon18	c.T1621C	p.S541P	AGTATTTCACCTA	.	74	53	133	0	.	62	1	61	0	0
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33289639	33289639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF830-89	NM_052857	exon1	c.G1054A	p.D352N	GACAGCGATGATG	.	37	27	65	0	.	13	1	12	0	0
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33513335	33513335	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UNC45B-157	NM_173167	exon20	c.G2553A	p.E851E	GTTGGAGATCCTC	.	70	51	118	1	.	0	0	0	0	0
PSMB3	5691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36912138	36912138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB3-90	NM_002795	exon3	c.C191T	p.A64V	TCAGTGCCCAGCG	.	106	78	171	0	.	0	0	0	0	0
GJD3	125111	hgsc.bcm.edu	37	17	38519449	38519449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152219	exon1	c.G619C	p.A207P	GCTCGGCTACGCT	.	10	9	2	0	.	1	1	0	0	0
KRTAP1-3	81850	broad.mit.edu;bcgsc.ca	37	17	39190723	39190723	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_030966	exon1	c.T351C	p.G117G	GCAGGTACCCTCC	.	169	14	182	1	.	0	0	0	0	0
KRTAP4-3	85290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39324164	39324164	+	Silent	SNP	G	G	T	rs12600645	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP4-3-22	NM_033187	exon1	c.C261A	p.S87S	GCAGCTGGAGATA	.	308	195	279	1	G|0.750;A|0.250	0	0	0	0	0
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39411754	39411754	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_030975	exon1	c.G117A	p.V39V	CTGTGTGTCTAGC	.	57	44	89	0	.	0	0	0	0	0
JUP	3728	ucsc.edu	37	17	39913949	39913949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JUP-479	NM_021991	exon11	c.A1861G	p.I621V	CATCAATGGCGTC	.	132	2	152	0	.	28	23	5	0	0
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40767023	40767023	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBG1-91	NM_001070	exon11	c.G1320A	p.R440R	CACACGGCCAGAC	.	187	154	211	0	.	37	1	36	0	0
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42274975	42274975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L3-68	NM_020218	exon2	c.A175C	p.K59Q	AATCCTTCATGCT	.	103	76	130	0	.	0	0	0	0	0
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42337788	42337788	+	Silent	SNP	G	G	A	rs55830560	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A1-92	NM_000342	exon6	c.C469T	p.L157L	GCAGCAGGGCCCG	.	141	107	201	0	.	0	0	0	0	0
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42475271	42475271	+	Missense_Mutation	SNP	C	C	T	rs200060507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPATCH8-94	NM_001002909	exon8	c.G4174A	p.G1392S	GAATGCCGATGGC	.	97	8	121	0	C|0.999;T|0.001	25	24	1	0	0
ACBD4	79777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43214817	43214817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD4-92	NM_001135707	exon6	c.C498G	p.S166R	CCCAAGCCCAGGT	.	53	44	106	0	.	0	0	0	0	0
LPO	4025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56344750	56344750	+	Silent	SNP	G	G	A	rs148241940	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPO-91	NM_006151	exon12	c.G1734A	p.P578P	ACAGCCGCAGACA	.	79	65	104	0	G|1.000;A|0.000	0	0	0	0	0
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388274	56388274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BZRAP1-229	NM_004758	exon19	c.C3382T	p.P1128S	CTCCTGGAGGCTC	.	27	21	25	0	.	1	0	1	0	0
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56435785	56435785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF43-92	NM_017763	exon9	c.G1352A	p.C451Y	TCTGTGCAATAGC	.	38	28	71	0	.	0	0	0	0	0
RAD51C	5889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56774113	56774113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAD51C-637	NM_058216	exon3	c.C464T	p.A155V	GTGAAGCAGTTTT	.	95	55	175	0	.	13	2	11	0	0
KIF19	124602	bcgsc.ca	37	17	72340954	72340954	+	Missense_Mutation	SNP	G	G	A	rs144185563		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF19-90	NM_153209	exon7	c.G637A	p.A213T	ACGGCCGCCAACC	.	147	114	115	4	G|1.000;A|0.000	0	0	0	0	0
TSEN54	283989	hgsc.bcm.edu	37	17	73512884	73512884	+	Missense_Mutation	SNP	T	T	G	rs8079373	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSEN54-91	NM_207346	exon2	c.T114G	p.H38Q	CTCGCATGGCCCC	.	7	6	0	0	T|0.845;G|0.155	3	0	3	0	0
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73839590	73839590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UNC13D-92	NM_199242	exon2	c.C128T	p.P43L	TGGGATGGAGGCT	.	75	61	92	0	.	0	0	0	0	0
FOXJ1	2302	hgsc.bcm.edu	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	11	11	2	0	C|0.925;T|0.075	0	0	0	0	0
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74387281	74387281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE2O-272	NM_022066	exon18	c.C3622A	p.L1208M	AGGCCAGGCCCTG	.	63	54	95	0	.	15	0	15	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76455088	76455088	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH17-142	NM_173628	exon61	c.A9856T	p.I3286F	CGGCAATCTTGTT	.	67	53	98	0	.	0	0	0	0	0
C1QTNF1	114897	bcgsc.ca	37	17	77043989	77043989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1QTNF1-91	NM_030968	exon4	c.T665C	p.F222S	TCTTGTTCGCGCA	.	107	84	156	3	.	12	12	0	0	0
TSPAN10	83882	broad.mit.edu	37	17	79612317	79612317	+	RNA	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSPAN10-23	.	.	.	.	TGATCTGGGGGGG	.	10	5	12	0	.	0	0	0	0	0
ARHGDIA	396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79827660	79827660	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGDIA-90	NM_004309	exon2	c.A147G	p.R49R	GTACTTTCGCAGG	.	20	19	61	1	.	294	31	262	0	1
CEP192	55125	hgsc.bcm.edu;broad.mit.edu	37	18	13059087	13059087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEP192-27	NM_032142	exon21	c.C4264T	p.L1422F	GTGGATCTTTCAA	.	69	4	99	0	.	0	0	0	0	0
POTEC	388468	broad.mit.edu	37	18	14533105	14533105	+	Missense_Mutation	SNP	G	G	C	rs76750627		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POTEC-3	NM_001137671	exon5	c.C1010G	p.S337C	TGTCCAGATAGAT	.	344	9	514	0	C|1.000;|0.000	1	1	0	0	0
CABYR	26256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21739840	21739840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CABYR-90	NM_153769	exon5	c.A946G	p.N316D	AATGCTAATCCTC	.	55	40	86	0	.	0	0	0	0	0
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47429038	47429038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO5B-72	NM_001080467	exon21	c.G2737A	p.A913T	GCTCTGCTGAGCG	.	56	40	71	0	.	13	0	13	0	0
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54293682	54293682	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TXNL1-90	NM_004786	exon2	c.105delG	p.G35fs	ACATGGCCCACAC	.	87	64	160	0	.	0	0	0	0	0
NEDD4L	23327	broad.mit.edu	37	18	55816791	55816791	+	Silent	SNP	G	G	A	rs4149601	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEDD4L-658	NM_001144968	exon1	c.G24A	p.Q8Q	TGAGCAGGTAACA	.	83	3	124	0	G|0.696;A|0.304	0	0	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP9B-93	NM_198531	exon1	c.A115G	p.S39G	CGGCACAGCAGGT	.	11	11	0	0	A|0.693;G|0.307	0	0	0	0	0
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288051	288051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPAP2C-90	NM_177543	exon2	c.C236A	p.A79D	ACCCCAGCCATGA	.	321	107	196	0	.	121	109	12	0	0
ODF3L2	284451	ucsc.edu;mdanderson.org	37	19	474730	474730	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ODF3L2-68	NM_182577	exon1	c.C18T	p.C6C	GGAGTCGCAGCTG	.	114	27	24	1	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	5	5	2	0	T|0.495;C|0.504	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	15	15	0	0	A|0.114;G|0.886	5	0	5	0	0
WDR18	57418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	985942	985942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR18-91	NM_024100	exon2	c.G288A	p.L96L	CGTCCTGGCAGGA	.	201	88	173	0	.	55	26	29	0	0
SGTA	6449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2763724	2763724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGTA-91	NM_003021	exon6	c.G424A	p.A142T	CGCCTGCGTAGTT	.	122	51	89	0	.	201	100	101	0	0
ZNF77	58492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2934175	2934175	+	Missense_Mutation	SNP	G	G	A	rs151130031	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF77-91	NM_021217	exon4	c.C950T	p.T317M	GTGTGCGTCCTCA	.	174	71	192	1	G|0.998;A|0.002	5	5	0	0	0
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3979353	3979353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EEF2-90	NM_001961	exon11	c.G1687A	p.E563K	GGTCCTCCTCCAG	.	134	63	104	0	.	3761	2086	1673	0	2
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	12	11	0	0	A|0.541;G|0.459	0	0	0	0	0
CHAF1A	10036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4423813	4423813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHAF1A-92	NM_005483	exon7	c.C1319T	p.A440V	TTAAAGCAGAGAA	.	87	27	88	2	.	0	0	0	0	0
UHRF1	29128	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4930840	4930840	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UHRF1-522	.	.	.	.	CCACGTCCAGGCC	.	183	88	102	0	.	17	10	7	0	0
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	5831650	5831650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUT6-90	NM_000150	exon3	c.A929G	p.K310R	TGGTCCTTGTCCA	.	1343	347	1019	1	.	0	0	0	0	0
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6213091	6213091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLLT1-658	NM_005934	exon12	c.C1642T	p.R548C	GTTTGCGCACGGT	.	215	102	140	0	.	16	9	7	0	0
GPR108	56927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	6731283	6731283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR108-68	NM_001080452	exon16	c.A1361G	p.Y454C	TAGACGTAGCAGA	.	115	49	53	0	.	0	0	0	0	0
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7622153	7622153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA6-47	NM_001166111	exon29	c.A3410G	p.Y1137C	GCGGCTACATCAA	.	164	60	69	0	.	69	35	34	0	0
LRRC8E	80131	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7965669	7965669	+	Silent	SNP	C	C	T	rs3745385	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC8E-92	NM_001268284	exon4	c.C2262T	p.G754G	CAAAGGCAACCGC	.	162	63	127	1	C|0.956;T|0.044	7	2	5	0	0
MAP2K7	5609	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7975940	7975940	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP2K7-1450	NM_145185	exon7	c.C751T	p.L251L	ATCCTGCTGGACG	.	233	79	150	1	.	24	10	14	0	0
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8138131	8138131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN3-100	NM_032447	exon61	c.C7753T	p.R2585C	TGTTGCGACAGGA	.	239	107	191	2	.	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	9	4	2	0	C|0.769;T|0.231	0	0	0	0	0
ANGPTL4	51129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8436389	8436389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANGPTL4-91	NM_139314	exon6	c.G1022A	p.C341Y	AGAACTGCGCCAA	.	192	81	91	1	.	9	9	0	0	0
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8531219	8531219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPM-68	NM_005968	exon7	c.G731A	p.R244H	AAAGTCGTGGAAT	.	163	60	143	0	.	126	57	69	0	0
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8563981	8563981	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032152	exon2	c.T711C	p.P237P	CTTCTTAGGGAGG	.	59	23	35	0	.	0	0	0	0	0
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8645784	8645784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS10-229	NM_030957	exon26	c.G3305A	p.G1102D	TAGTGGCCATGGC	.	33	8	20	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9019621	9019621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon22	c.A37525G	p.T12509A	CAGAGGTCCGATG	.	328	139	273	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084962	9084962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon1	c.A6853G	p.T2285A	TTGAAGTCAACTC	.	82	32	84	0	.	0	0	0	0	0
OR1M1	125963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9204539	9204539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1M1-71	NM_001004456	exon1	c.A619T	p.I207L	ATGGTGATAGCCA	.	117	54	101	0	.	0	0	0	0	0
ZNF317	57693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9271917	9271917	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF317-90	NM_020933	exon7	c.C1596T	p.C532C	CGAATGCGATCAC	.	212	91	148	1	.	23	8	15	0	0
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453476	9453476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF559-91	NM_001202406	exon6	c.C1541T	p.S514L	ACTCCTCGCACCT	.	201	83	133	0	.	6	3	3	0	0
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9639084	9639084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF426-91	NM_024106	exon8	c.C1637T	p.S546L	CGAAGTGAACGGG	.	25	12	35	0	.	4	1	3	0	0
RAVER1	125950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10439472	10439472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAVER1-91	NM_133452	exon3	c.G653A	p.R218H	AGGGTGCGTGGTC	.	382	151	242	1	.	69	37	32	0	0
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10578111	10578111	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4A-523	NM_001111307	exon15	c.G2475A	p.R825R	TTGGAGGACCCTG	.	106	37	97	0	.	3	3	0	0	0
ATG4D	84971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10657607	10657607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG4D-90	NM_032885	exon4	c.C586T	p.P196S	TGGATGCCCCCAC	.	87	39	33	0	.	41	24	17	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11097117	11097117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMARCA4-1523	NM_003072	exon4	c.C608T	p.A203V	AGATGGCGGTGCA	.	129	49	65	0	.	57	37	20	0	0
SMARCA4	6597	hgsc.bcm.edu	37	19	11098456	11098456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMARCA4-1523	NM_003072	exon6	c.T974C	p.V325A	CGCCCGTGATGCC	.	24	7	3	0	.	25	15	10	0	0
KANK2	25959	hgsc.bcm.edu;broad.mit.edu	37	19	11304002	11304002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KANK2-68	NM_015493	exon2	c.C754T	p.L252F	CGGGGAGGTCCAG	.	64	4	42	0	.	25	23	2	0	0
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11326127	11326127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK6-93	NM_020812	exon32	c.C4042A	p.P1348T	TCTCCGGATTCCC	.	152	66	137	0	.	11	8	3	0	0
EPOR	2057	ucsc.edu;bcgsc.ca	37	19	11492756	11492756	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPOR-523	NM_000121	exon3	c.C277T	p.L93L	GGTGCAGGCGACA	.	209	97	175	3	.	16	11	5	0	0
ZNF833P	401898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11797189	11797189	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF833P-91	.	.	.	.	CTAATGCATTGTA	.	156	64	169	1	.	0	0	0	0	0
ZNF823	55552	broad.mit.edu	37	19	11832936	11832936	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF823-24	NM_001080493	exon4	c.T1413C	p.Y471Y	ACACTCATATGGC	.	108	4	89	0	.	10	10	0	0	0
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11892031	11892031	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF441-69	NM_152355	exon4	c.A1392G	p.V464V	TCGAGTACATGAA	.	47	17	44	0	.	1	1	0	0	0
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11917409	11917409	+	Missense_Mutation	SNP	C	C	T	rs140071849	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF491-92	NM_152356	exon3	c.C641T	p.P214L	AGAAGCCGTACAA	.	44	13	46	0	C|1.000;T|0.000	1	1	0	0	0
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12060900	12060900	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF700-90	NM_001271848	exon4	c.T2070A	p.S690S	CACATCTGCCAAG	.	168	85	118	0	.	10	4	6	0	0
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155177	12155177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080404	exon4	c.G1039A	p.A347T	TGAAGGCTTTCAC	.	36	22	24	0	.	0	0	0	0	0
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12386792	12386792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF44-23	NM_001164276	exon3	c.A253G	p.I85V	TCCTAATGGTTTC	.	159	66	133	0	.	0	0	0	0	0
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12430322	12430322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF563-90	NM_145276	exon4	c.G517A	p.E173K	CACATTCCTTACA	.	210	74	171	0	.	2	0	2	0	0
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12637692	12637692	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF564-91	NM_144976	exon4	c.A1230T	p.I410I	TTCGTGTATTTGA	.	126	56	86	0	.	9	1	8	0	0
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12768936	12768936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAN2B1-94	NM_000528	exon10	c.C1250A	p.A417E	ACCAGCGCCTCCA	.	117	55	46	0	.	58	29	29	0	0
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13216335	13216335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT1-92	NM_001136035	exon15	c.G1669A	p.A557T	AGTTGGCCTCCGG	.	89	34	77	0	.	34	16	18	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13397604	13397604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1A-67	NM_001127221	exon20	c.G3269A	p.G1090D	GGCAGGCCGGCGT	.	55	20	6	0	.	0	0	0	0	0
RFX1	5989	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14074020	14074020	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RFX1-92	NM_002918	exon19	c.C2638T	p.L880L	AGAGCAGCCGGAT	.	83	26	55	1	.	8	5	3	0	0
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14261780	14261780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPHN1-523	NM_001008701	exon24	c.C4330T	p.R1444W	GACGCCGCACCTG	.	110	49	39	0	.	23	11	12	0	0
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14865828	14865828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EMR2-524	NM_013447	exon14	c.A1528G	p.T510A	AGATGGTGCTGGT	.	244	100	176	1	.	0	0	0	0	0
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14991440	14991440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR7A17-68	NM_030901	exon1	c.C728T	p.S243L	AGGTGTGATGCAC	.	177	64	160	0	.	0	0	0	0	0
SYDE1	85360	hgsc.bcm.edu	37	19	15221496	15221496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYDE1-92	NM_033025	exon4	c.1240delC	p.P414fs	CAGGTGCCCCTCA	.	129	53	35	1	.	0	0	0	0	0
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15535673	15535673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WIZ-68	NM_021241	exon6	c.G1780A	p.A594T	GGTAGGCGCCCAC	.	158	11	89	0	.	30	30	0	0	0
CYP4F12	66002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15794437	15794437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CYP4F12-95	NM_023944	exon7	c.G782C	p.R261P	CCTGCCGCCTGGT	.	139	63	139	0	.	0	0	0	0	0
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17170457	17170457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS8-90	NM_033417	exon6	c.A330T	p.K110N	GATGCTTTTGTCT	.	62	29	77	0	.	0	0	0	0	0
MYO9B	4650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17317488	17317488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO9B-67	NM_001130065	exon34	c.A5387T	p.E1796V	CTGCAGAGCTGCC	.	159	66	116	2	.	1	0	1	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	29	12	0	0	C|0.617;T|0.383	29	15	14	0	0
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17844087	17844087	+	Silent	SNP	C	C	T	rs113822615	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP1S-90	NM_018174	exon6	c.C2874T	p.S958S	CGGGAGCAGCGCC	.	336	21	182	0	C|0.500;T|0.500	39	36	3	0	0
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17953936	17953936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JAK3-2418	NM_000215	exon5	c.C466T	p.L156F	CCTTGAGACTGAG	.	107	44	65	1	.	0	0	0	0	0
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18331093	18331093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4C-94	NM_000923	exon8	c.T745A	p.S249T	TTTCGGACAGGTG	.	225	80	208	0	.	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GDF1-226	NM_001492	exon8	c.C353T	p.A118V	GCCGAGGCAGGCT	.	7	7	0	0	G|0.715;A|0.285	6	0	6	0	0
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19115190	19115190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUGP2-91	NM_014884	exon7	c.G2716T	p.A906S	CGGGGGCCTCCTC	.	77	34	33	0	.	21	9	11	1	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19337773	19337773	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon7	c.G1551A	p.V517V	TGCAGTGAACCAA	.	93	45	84	0	.	0	0	0	0	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19338131	19338131	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon8	c.1702delC	p.P568fs	CTGTGGCCCCCTA	.	31	12	31	0	.	0	0	0	0	0
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19744710	19744710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon19	c.G2374A	p.D792N	CTGGGTCAAGGTG	.	54	26	39	0	.	5	3	2	0	0
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	19748233	19748233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon11	c.G1065C	p.E355D	CGGGGCCTCGGGC	.	24	9	11	0	.	1	1	0	0	0
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20307780	20307780	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF486-47	NM_052852	exon4	c.T261C	p.C87C	TGTGTGTTCTCAT	.	93	41	80	0	.	0	0	0	0	0
VSTM2B	342865	broad.mit.edu;mdanderson.org	37	19	30018287	30018287	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VSTM2B-68	NM_001146339	exon2	c.G252C	p.P84P	CGTGCCGGGCGCC	.	29	11	13	1	.	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	9	5	0	0	G|0.540;T|0.460	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33696354	33696354	+	Silent	SNP	C	C	T	rs3745977	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP3-92	NM_002333	exon5	c.C678T	p.R226R	CACGCGCTGCCTG	.	38	21	1	0	C|0.945;T|0.055	25	9	16	0	0
CHST8	64377	hgsc.bcm.edu	37	19	34263134	34263134	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST8-156	NM_001127895	exon5	c.C441T	p.V147V	CTGGGTCAGCCTG	.	54	30	0	0	.	0	0	0	0	0
LSM14A	26065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687595	34687595	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LSM14A-91	NM_001114093	exon3	c.C342T	p.F114F	ACCTTTCGGCAGG	.	121	46	156	1	.	76	37	39	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34941214	34941214	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA2-227	NM_005499	exon9	c.A816G	p.L272L	CAAACTATGGCGG	.	195	85	131	0	.	78	47	31	0	0
SCGB2B2	284402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35085231	35085231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001025591	exon2	c.C95T	p.A32V	ACATTCGCAAGCA	.	151	69	138	0	.	0	0	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35625482	35625482	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGI4-91	NM_139284	exon1	c.A103T	p.K35X	TGTCTTTAGAGCA	.	189	83	152	0	.	4	4	0	0	0
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35941567	35941567	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FFAR2-90	NM_005306	exon1	c.T951C	p.G317G	TGTGGGTCAAGGA	.	123	56	86	0	.	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	rs117522133	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	90	21	92	0	C|0.945;T|0.055	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T	rs142519211	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.G842A	p.S281N	CCACTGCTGCCGC	.	90	18	92	0	C|0.957;T|0.043	0	0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36002401	36002401	+	Frame_Shift_Del	DEL	C	C	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.830delG	p.S277fs	CCACTGCTGCTGC	.	81	8	85	0	.	0	0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36002403	36002404	+	Frame_Shift_Del	DEL	GC	GC	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.827_828del	p.276_276del	ACTGCTGCTGCCA	.	83	0	84	0	.	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002410	36002412	+	In_Frame_Del	DEL	CTG	CTG	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTG	CTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.819_821del	p.273_274del	CTGCCACTGCTGC	.	85	13	82	0	.	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36210835	36210837	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon3	c.586_588del	p.196_196del	ACTGAACTTCTCC	.	114	35	63	0	.	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36223774	36223774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon28	c.C6324A	p.D2108E	TGAGGACCTGCCA	.	97	38	74	0	.	39	19	20	0	0
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36574056	36574056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR62-90	NM_173636	exon11	c.C1463G	p.P488R	GGACACCCATGGA	.	148	77	120	0	.	24	7	17	0	0
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36643303	36643303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COX7A1-226	NM_001864	exon1	c.G7A	p.A3T	GAAGGGCCTGCAT	.	107	47	61	0	.	0	0	0	0	0
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	19	37210811	37210811	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF567-90	NM_152603	exon4	c.T1092C	p.C364C	CATTTGTAAAGAA	.	59	34	52	2	.	3	0	3	0	0
ZNF793	390927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38023351	38023351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF793-68	NM_001013659	exon6	c.A109G	p.M37V	GATGTGATGCTGG	.	175	60	108	1	.	10	7	3	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38590772	38590772	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIPA1L3-91	NM_015073	exon5	c.G1836A	p.L612L	ACTGCTGAAGCTC	.	81	35	83	0	.	6	1	5	0	0
GGN	199720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38875168	38875168	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGN-90	NM_152657	exon4	c.C1843T	p.L615L	TGCTCAGCCTAGT	.	84	41	69	0	.	0	0	0	0	0
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39070652	39070652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RYR1-100	NM_000540	exon100	c.A14395C	p.M4799L	ATGGTGATGTCCC	.	135	46	110	1	.	0	0	0	0	0
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262626	39262626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C140T	p.A47V	AGCGCGGCATCGG	.	440	216	250	1	.	1	0	1	0	0
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262667	39262667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C99A	p.F33L	TACATGGAACCTG	.	303	184	200	1	.	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	25	5	2	0	T|0.545;C|0.455	1	1	0	0	0
PAPL	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39591616	39591616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001004318	exon8	c.C835T	p.P279S	GCCCGGCCGTGGA	.	66	24	50	0	.	0	0	0	0	0
LRFN1	57622	hgsc.bcm.edu	37	19	39805934	39805934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRFN1-70	NM_020862	exon1	c.C43T	p.P15S	CAGCGGGCGGCGG	.	43	16	6	0	.	1	1	0	0	0
AXL	558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41758838	41758838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AXL-1403	NM_021913	exon16	c.T1892C	p.F631S	ACAGCTTCCTCCT	.	63	26	59	0	.	9	7	2	0	0
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224956	42224956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEACAM5-92	NM_004363	exon8	c.T1886C	p.I629T	GGCGTATCAATGG	.	317	153	279	0	.	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001271938	exon3	c.491delG	p.W164fs	CGGGCTGGGGGGG	.	131	48	29	0	.	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42861562	42861562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001271938	exon28	c.C4837A	p.Q1613K	GCCCCCCAGACCG	.	84	37	53	0	.	0	0	0	0	0
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43411912	43411912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSG6-92	NM_001031850	exon4	c.C801A	p.N267K	GGTGTAGTTCCGA	.	156	52	162	0	.	0	0	0	0	0
PSG7	5676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43439806	43439806	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	AAGATTCTGGGGC	.	200	97	180	0	.	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.1856delC	p.P619fs	GGCTCAGGGGGTG	.	252	123	92	0	.	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44097165	44097165	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.G885A	p.T295T	GTAGTGCGTTGGG	.	168	61	36	0	.	13	5	8	0	0
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223111	44223111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGC-70	NM_019612	exon2	c.A401G	p.Y134C	GCCGCTATGACTT	.	104	45	59	0	.	1	1	0	0	0
IRGC	56269	broad.mit.edu	37	19	44223898	44223898	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGC-70	NM_019612	exon2	c.C1188A	p.A396A	GGACGCCCAGCGT	.	148	5	111	0	.	0	0	0	0	0
ZNF155	7711	bcgsc.ca	37	19	44501240	44501240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF155-154	NM_001260488	exon6	c.A1264G	p.T422A	TTTTATACAAATT	.	144	66	99	2	.	0	0	0	0	0
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44739706	44739706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF227-91	NM_182490	exon6	c.A1123G	p.T375A	GTCCACACTGAAG	.	61	5	56	0	.	5	4	0	0	1
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	94	31	2	0	T|0.861;C|0.139	42	33	9	0	0
KLC3	147700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45851316	45851316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLC3-91	NM_177417	exon5	c.C677T	p.A226V	AGGTGGCGGTGCC	.	323	157	172	1	.	2	2	0	0	0
ERCC1	2067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45924593	45924593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERCC1-659	NM_001983	exon3	c.C164T	p.A55V	GGGGCCGCCTGGG	.	89	36	93	1	.	192	88	104	0	0
VASP	7408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46024603	46024603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASP-514	NM_003370	exon4	c.G367A	p.A123T	CCCCCAGCACTTC	.	60	32	77	0	.	53	34	19	0	0
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47572589	47572589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZC3H4-74	NM_015168	exon14	c.C2158T	p.H720Y	CGTAGTGCCCGTA	.	51	18	45	0	.	0	0	0	0	0
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47876940	47876940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX34-231	NM_014681	exon9	c.C2047T	p.L683F	GCCAACCTTCGGC	.	134	44	80	0	.	7	4	3	0	0
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48894556	48894556	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDELR1-90	NM_006801	exon1	c.G60A	p.L20L	TTTGAGCAGTAGC	.	85	41	63	0	.	816	440	376	0	0
LMTK3	114783	hgsc.bcm.edu	37	19	49002214	49002214	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LMTK3-1357	NM_001080434	exon12	c.C2199T	p.P733P	GTCCTCGGGGGGG	.	13	7	3	0	.	1	0	1	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	10	6	0	0	A|0.464;G|0.536	0	0	0	0	0
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49261316	49261316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF21-522	NM_019113	exon3	c.G469A	p.A157T	GACCCTGCACCCC	.	174	62	114	0	.	1	0	1	0	0
RUVBL2	10856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49507564	49507564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUVBL2-227	NM_006666	exon4	c.G154A	p.A52T	CTGGCGGCACGGC	.	163	81	120	1	.	71	35	35	1	0
TEAD2	8463	hgsc.bcm.edu;bcgsc.ca	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TEAD2-92	NM_001256660	exon10	c.895delC	p.H299fs	AGGCATGGGGGGG	.	79	36	63	3	.	0	0	0	0	0
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50017380	50017380	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGRT-91	NM_001136019	exon3	c.315delG	p.L105fs	AGCTTTGGGGGGA	.	44	21	50	0	.	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50100497	50100497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRR12-70	NM_020719	exon4	c.G2905A	p.E969K	CCACCTGAGGACG	.	59	24	20	0	.	17	11	6	0	0
TSKS	60385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50245268	50245268	+	Silent	SNP	C	C	T	rs201242813	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSKS-154	NM_021733	exon9	c.G1371A	p.S457S	CAACTGCGACCCC	.	75	33	75	0	C|0.999;A|0.000	0	0	0	0	0
VRK3	51231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50498494	50498494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VRK3-359	NM_016440	exon8	c.G718A	p.A240T	GGATGGCCAGCAG	.	229	96	156	0	.	39	23	16	0	0
POLD1	5424	hgsc.bcm.edu;bcgsc.ca	37	19	50918843	50918844	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLD1-840	NM_002691	exon21	c.2713_2714del	p.905_905del	CTGGCCGAGAGGT	.	246	100	67	1	.	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51015773	51015773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASPDH-90	NM_001114598	exon5	c.C497T	p.A166V	CTGTGGGCTGCAG	.	28	10	13	0	.	1	0	1	0	0
SHANK1	50944	hgsc.bcm.edu	37	19	51171188	51171188	+	Silent	SNP	G	G	A	rs750578		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHANK1-153	NM_016148	exon22	c.C4029T	p.T1343T	CTTGCCGGTCAGC	.	4	4	0	0	G|0.661;A|0.339	0	0	0	0	0
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630290	51630290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC9-91	NM_001198558	exon4	c.C752T	p.S251F	CAGTATCCACAGT	.	63	21	62	0	.	0	0	0	0	0
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003397	52003397	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC12-96	NM_053003	exon2	c.C585T	p.A195A	TATATCGGCCCCT	.	320	120	286	0	.	0	0	0	0	0
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52327406	52327406	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FPR3-501	NM_002030	exon2	c.C405T	p.N135N	CCAGAACCATCGC	.	255	91	216	0	.	1	1	0	0	0
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53612773	53612773	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF415-91	NM_018355	exon4	c.T525A	p.V175V	TGGTGAAACTGAG	.	108	45	97	0	.	27	24	3	0	0
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54080878	54080878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF331-663	NM_001253801	exon5	c.A1064G	p.Y355C	AGCCGTACAAGTG	.	273	116	200	1	.	15	15	0	0	0
NLRP12	91662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54312911	54312911	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP12-211	NM_144687	exon3	c.A2002A	p.S668S	AGGTGGCGCCATA	.	98	36	94	2	.	0	0	0	0	0
CACNG7	59284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54445384	54445384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNG7-91	NM_031896	exon5	c.G665A	p.S222N	GTCTCAGCGACTG	.	328	137	142	1	.	0	0	0	0	0
TFPT	29844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54617860	54617860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TFPT-658	NM_013342	exon2	c.T244C	p.Y82H	CCTGGTACTTTCT	.	153	66	89	1	.	64	28	36	0	0
LENG9	94059	hgsc.bcm.edu	37	19	54974329	54974329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LENG9-68	NM_198988	exon1	c.447delC	p.F149fs	GCGGAAGAAGCGC	.	48	21	1	0	.	0	0	0	0	0
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55494293	55494293	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP2-120	NM_017852	exon6	c.G1227A	p.K409K	TCTGAAGCTGCAG	.	334	130	192	0	.	0	0	0	0	0
EPS8L1	54869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55598758	55598758	+	Silent	SNP	G	G	T	rs184296169	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPS8L1-115	NM_133180	exon19	c.G2040T	p.G680G	GGAGGGGGCACGT	.	140	66	65	1	G|0.999;A|0.000	9	2	7	0	0
TNNI3	7137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55667611	55667611	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNNI3-92	.	.	.	.	CGGCTGGCAGCGG	.	157	82	58	0	.	15	11	4	0	0
PPP6R1	22870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55742232	55742232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP6R1-67	NM_014931	exon22	c.C2480T	p.T827I	ACAGAGGTAGAGG	.	50	21	18	0	.	131	62	69	0	0
ZNF579	163033	hgsc.bcm.edu	37	19	56090309	56090309	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF579-90	NM_152600	exon2	c.C697T	p.L233L	AGCGCAGACACAG	.	63	27	7	0	.	6	4	2	0	0
ZNF784	147808	hgsc.bcm.edu	37	19	56133258	56133258	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF784-68	NM_203374	exon2	c.G831A	p.G277G	CCCCGGCCCGTGG	.	40	16	5	0	.	1	1	0	0	0
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56473553	56473553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP8-361	NM_176811	exon4	c.G2163C	p.K721N	TTTGAAGGCTCTC	.	142	75	115	0	.	0	0	0	0	0
ZNF71	58491	broad.mit.edu	37	19	57133639	57133639	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF71-91	NM_021216	exon3	c.C984T	p.C328C	CGTGTGCGGCGAG	.	397	9	265	1	.	27	27	0	0	0
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1983497	1983497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYT1L-95	NM_015025	exon6	c.G53A	p.R18Q	ATACCTCGAACCC	.	108	61	63	0	.	0	0	0	0	0
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3193197	3193197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSSC1-90	NM_003310	exon9	c.G1072A	p.A358T	GGTCAGCCGAGGA	.	289	140	217	0	.	46	18	28	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	1	0	1	0	0
NTSR2	23620	hgsc.bcm.edu	37	2	11810064	11810064	+	Silent	SNP	G	G	T	rs11556847		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTSR2-946	NM_012344	exon1	c.C192A	p.R64R	CCCCGCGCGCCCG	.	11	4	0	0	G|1.000;|0.000	0	0	0	0	0
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15694258	15694258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBAS-94	NM_015909	exon4	c.G214A	p.A72T	AAGGTGCCGGGCT	.	127	60	100	1	.	0	0	0	0	0
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17906608	17906608	+	Silent	SNP	C	C	T	rs144198428	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMC6-292	NM_001142286	exon9	c.G642A	p.T214T	AAGTTGCGTTGCT	.	32	6	31	0	C|0.999;T|0.001	14	5	9	0	0
WDR35	57539	ucsc.edu;bcgsc.ca	37	2	20174293	20174293	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR35-91	NM_020779	exon7	c.C672A	p.C224X	GCAAGGGCAATCA	.	306	127	297	3	.	1	1	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233246	21233246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOB-175	NM_000384	exon26	c.T6494A	p.I2165N	AAGTTGATTTTGG	.	37	15	39	0	.	0	0	0	0	0
NCOA1	8648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24929918	24929918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOA1-228	NM_147223	exon11	c.A1579G	p.N527D	GCCTGTAATAATA	.	172	84	162	2	.	22	11	11	0	0
PTRHD1	391356	bcgsc.ca	37	2	25013384	25013384	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTRHD1-90	NM_001013663	exon2	c.C319T	p.L107L	GCCACAGCATGTG	.	138	75	119	2	.	119	81	38	0	0
OTOF	9381	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26707488	26707488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOF-135	NM_194248	exon12	c.T1059A	p.H353Q	CTTGTGATGGAAC	.	248	103	168	2	.	0	0	0	0	0
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27121385	27121385	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYSL5-92	NM_001253724	exon2	c.C18T	p.A6A	CTCAGCCAGCGTG	.	513	241	395	1	.	0	0	0	0	0
SLC5A6	8884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27428302	27428302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC5A6-92	NM_021095	exon7	c.T650A	p.V217D	ATGATAACTGCCA	.	341	135	240	1	.	0	0	0	0	0
CAD	790	hgsc.bcm.edu;bcgsc.ca	37	2	27455435	27455435	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAD-295	NM_004341	exon18	c.2765delG	p.W922fs	CGTATTGGGGCAC	.	307	129	214	0	.	0	0	0	0	0
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	28719029	28719029	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLB1-141	NM_001170585	exon1	c.48delG	p.L16fs	GCTTCTGGGGCAA	.	109	50	77	0	.	0	0	0	0	0
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31409307	31409307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145122	exon16	c.G1632C	p.Q544H	GGTCATCTGGTTC	.	161	72	113	0	.	0	0	0	0	0
SLC30A6	55676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32417996	32417996	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC30A6-90	NM_001193513	exon8	c.C495T	p.R165R	AGAACGCTTTTTG	.	54	23	75	1	.	0	0	0	0	0
CRIM1	51232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	36740805	36740805	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIM1-118	NM_016441	exon11	c.C1887T	p.C629C	GGAATGCTACTGT	.	200	87	209	2	.	13	12	1	0	0
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37096725	37096725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRN-91	NM_003162	exon11	c.A1471T	p.N491Y	GTAAATTCCACAT	.	95	44	72	0	.	17	9	8	0	0
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCG5-92	NM_022436	exon11	c.1528delC	p.H510fs	TTAAGTGGGGGGC	.	243	107	233	0	.	0	0	0	0	0
LRPPRC	10128	hgsc.bcm.edu;bcgsc.ca	37	2	44145165	44145165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRPPRC-93	NM_133259	exon29	c.3147delA	p.K1049fs	CTTGCCTTTTTTT	.	78	38	75	0	.	0	0	0	0	0
ATP6V1E2	90423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46739273	46739273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V1E2-70	NM_080653	exon2	c.C578T	p.S193L	GTATTTGAAACCT	.	111	41	80	0	.	6	4	2	0	0
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54152700	54152700	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSME4-275	NM_014614	exon14	c.C1785T	p.T595T	ACATTGGGTGAGG	.	121	57	119	0	.	31	20	11	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067294	62067294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM161A-136	NM_032180	exon3	c.T845C	p.F282S	GCTCGGAATTTCT	.	51	29	55	0	.	2	2	0	0	0
AFTPH	54812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64780103	64780103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AFTPH-70	NM_017657	exon2	c.G1495T	p.D499Y	AAGTCAGACCTAA	.	55	22	78	1	.	9	5	4	0	0
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68368892	68368892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR92-68	NM_001256476	exon4	c.G451A	p.D151N	CAGGATCATCTTT	.	158	10	170	0	.	18	17	1	0	0
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69746290	69746290	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AAK1-333	NM_014911	exon12	c.T1293C	p.T431T	GGCCTGAGTTTGC	.	102	43	80	0	.	11	3	8	0	0
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72742236	72742236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC6B-68	NM_015189	exon9	c.A935T	p.E312V	TAATTCTCAAATG	.	88	46	74	0	.	20	6	14	0	0
EGR4	1961	broad.mit.edu;mdanderson.org	37	2	73518917	73518917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EGR4-90	NM_001965	exon2	c.G1438A	p.A480T	CCTTGGCGTGCGG	.	30	15	8	0	.	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73717935	73717935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALMS1-142	NM_015120	exon10	c.C8846A	p.P2949H	CCCTTCCTCAAGG	.	57	27	48	0	.	4	2	2	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	188	50	65	5	.	5	5	0	0	0
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74709403	74709403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC142-68	NM_032779	exon1	c.G562A	p.A188T	CGAGAGCGCGAAG	.	163	73	106	1	.	1	0	1	0	0
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74720124	74720124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC31-90	NM_022492	exon13	c.G1339A	p.A447T	GAGCTGGCACCCT	.	187	81	136	0	.	24	7	17	0	0
LOXL3	84695	hgsc.bcm.edu;bcgsc.ca	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOXL3-226	NM_032603	exon5	c.824delG	p.G275fs	GCAGGGCCCCCCC	.	194	83	131	1	.	0	0	0	0	0
HK2	3099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75104357	75104357	+	Missense_Mutation	SNP	G	G	A	rs28363015	bycluster;byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HK2-252	NM_000189	exon8	c.G940A	p.A314T	AAGATGGCCAAGG	.	89	43	61	1	G|0.952;C|0.048	67	28	39	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	84771614	84771614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH6-69	NM_001370	exon5	c.T920G	p.I307S	TGTTCATTGTTAA	.	33	18	16	0	.	0	0	0	0	0
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86371958	86371958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMMT-91	NM_006839	exon15	c.G1710A	p.W570X	TGAAAGCCAGAGT	.	63	30	44	0	.	283	101	182	0	0
KDM3A	55818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86711133	86711133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM3A-291	NM_001146688	exon19	c.T2946A	p.H982Q	AGTGCATCATAAA	.	127	53	109	1	.	24	18	5	1	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	7	7	0	0	A|0.476;G|0.524	0	0	0	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88857349	88857349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2AK3-361	NM_004836	exon17	c.3256delA	p.T1086fs	GCACTGTTTTTCC	.	275	7	163	0	.	0	0	0	0	0
ANKRD39	51239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97519168	97519168	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD39-44	NM_016466	exon3	c.G378A	p.V126V	GTCATCCACCACC	.	167	73	136	0	.	12	3	9	0	0
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	98340777	98340777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZAP70-955	NM_001079	exon3	c.G278A	p.G93E	CCGACGGGCTGCC	.	122	66	13	0	.	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101652587	101652587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D8-25	NM_001102426	exon9	c.T1451C	p.V484A	TATTCCACAAAGT	.	68	6	136	0	.	10	10	0	0	0
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102483026	102483026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K4-547	NM_001242559	exon18	c.C2107T	p.R703C	GGGGAACGCTTCA	.	72	53	106	0	.	13	7	6	0	0
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103300745	103300745	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC9A2-157	NM_003048	exon5	c.T1375C	p.L459L	AAAAAATTGTTTA	.	131	116	174	0	.	1	0	1	0	0
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108609479	108609479	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC5A7-93	NM_021815	exon4	c.T344A	p.L115X	CCATGTTAGACCC	.	84	63	155	0	.	0	0	0	0	0
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110902136	110902136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPHP1-92	NM_000272	exon15	c.C1531T	p.L511F	AGAAAAGCTCATA	.	108	77	196	0	.	0	0	0	0	0
IL37	27178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113671396	113671396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL37-92	NM_014439	exon2	c.G110A	p.G37D	AACCAGGCCCAAG	.	128	87	238	0	.	0	0	0	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116101426	116101426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPP10-142	NM_001178034	exon3	c.C221A	p.S74Y	GATTGTCTTTGGA	.	40	12	62	0	.	7	3	4	0	0
INHBB	3625	hgsc.bcm.edu	37	2	121103890	121103890	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C126T	p.P42P	GCCACCCCCGCCA	.	9	7	1	0	.	1	1	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103925	121103925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C161A	p.T54N	AGGACACCTGTAC	.	43	38	9	0	.	8	8	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103941	121103941	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C177T	p.G59G	GTGCGGCGGCTTC	.	57	51	15	0	.	7	7	0	0	0
INHBB	3625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	121103965	121103965	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C201T	p.L67L	GGAGCTCGGCCGA	.	75	63	21	0	.	9	9	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121104035	121104035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C271T	p.R91W	CGGGGCCGGCCCA	.	66	52	11	0	.	9	9	0	0	0
INHBB	3625	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121106703	121106703	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon2	c.A477G	p.L159L	CCGCCTATACTTC	.	125	87	231	2	.	70	64	6	0	0
CLASP1	23332	ucsc.edu;bcgsc.ca	37	2	122216419	122216419	+	Silent	SNP	A	A	G	rs2304560	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLASP1-91	NM_001207051	exon13	c.T1311C	p.I437I	TACCCGAATAATT	.	42	4	63	0	A|0.779;G|0.221	0	0	0	0	0
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521542	131521542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152698	exon2	c.C1897A	p.P633T	AAGGCCCCAGTTC	.	159	75	159	0	.	0	0	0	0	0
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521962	131521962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152698	exon2	c.C2317T	p.Q773X	GAGGACCAGCCCT	.	164	71	123	0	.	0	0	0	0	0
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131797625	131797625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF4-292	NM_032995	exon7	c.G784A	p.A262T	GACGACGCCCCTC	.	147	117	73	1	.	0	0	0	0	0
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814011	137814011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THSD7B-75	.	.	.	.	GTACAGGAGACTG	.	66	33	53	0	.	14	7	7	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141259364	141259364	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1B-311	NM_018557	exon55	c.T8742C	p.D2914D	ACAGTCATCCTTA	.	86	34	102	0	.	0	0	0	0	0
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707930	141707930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1B-311	NM_018557	exon20	c.C3010T	p.H1004Y	AAGAGTGAACACA	.	200	93	191	1	.	0	0	0	0	0
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115854	158115854	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT5-290	NM_014568	exon1	c.G1260A	p.T420T	TGGAACGCACCAG	.	71	33	60	0	.	0	0	0	0	0
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159954275	159954275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TANC1-92	NM_033394	exon4	c.C188T	p.S63F	CGATGTCTCTGCC	.	125	49	64	0	.	5	3	2	0	0
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160132121	160132121	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDSUB1-90	NM_152528	exon4	c.A612G	p.R204R	TGCCAGTCGAAAA	.	139	71	101	0	.	20	10	10	0	0
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH7-68	NM_022826	exon5	c.879delT	p.T293fs	ATCTACTTTTTTT	.	106	48	98	2	.	0	0	0	0	0
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160885416	160885416	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2R1-93	NM_001195641	exon5	c.C900T	p.H300H	GCCAGCGTGTTCA	.	389	193	275	1	.	0	0	0	0	0
TBR1	10716	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162274227	162274227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBR1-91	NM_006593	exon2	c.G733T	p.D245Y	GGTCTCGATCCCA	.	78	25	97	1	.	0	0	0	0	0
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719408	162719408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A10-229	NM_001178016	exon7	c.G635A	p.S212N	AAGTGAGCTCAGG	.	246	118	179	0	.	0	0	0	0	0
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466944	164466944	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FIGN-156	NM_018086	exon3	c.G1398A	p.T466T	GAGGTGCGTGTCA	.	260	100	253	1	.	1	1	0	0	0
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153538	166153538	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN2A-142	NM_001040143	exon2	c.A279T	p.V93V	TATAGTATTGAAT	.	150	65	135	1	.	0	0	0	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166226748	166226748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN2A-142	NM_001040143	exon19	c.C3788T	p.A1263V	GGGTTGCATATGG	.	158	83	160	0	.	0	0	0	0	0
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166611442	166611442	+	Nonsense_Mutation	SNP	G	G	C	rs144331248	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon8	c.C1524G	p.Y508X	ACTCACGTATCCA	.	105	38	99	0	G|1.000;A|0.000	0	0	0	0	0
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166621434	166621434	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon3	c.G648A	p.L216L	CTTCAGCAGTATT	.	318	141	290	1	.	0	0	0	0	0
TTC21B	79809	ucsc.edu;bcgsc.ca	37	2	166781188	166781188	+	Missense_Mutation	SNP	G	G	A	rs16851307	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC21B-94	NM_024753	exon12	c.C1387T	p.P463S	TTGCAGGCTAAAC	.	107	49	114	1	G|0.983;A|0.017	0	0	0	0	0
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	167330837	167330837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN7A-67	NM_002976	exon3	c.252delT	p.N84fs	ATTTTTATTTAAT	.	39	12	40	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168099879	168099879	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	XIRP2-104	NM_152381	exon9	c.A1977C	p.E659D	GTTTGAAACAAGG	.	419	200	345	0	.	0	0	0	0	0
NOSTRIN	115677	hgsc.bcm.edu;bcgsc.ca	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOSTRIN-90	NM_001039724	exon8	c.566delA	p.Q189fs	ACTACCAAAAAAA	.	337	126	232	1	.	0	0	0	0	0
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169948425	169948425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS9-90	NM_005771	exon7	c.A698G	p.D233G	CTCCAGACATCAA	.	117	48	99	0	.	1	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170127462	170127462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP2-175	NM_004525	exon16	c.2272delT	p.S758fs	TATCTGAAAAAAA	.	258	7	184	0	.	0	0	0	0	0
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178083867	178083867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPA3-70	NM_194247	exon9	c.G1064A	p.S355N	GAAGAAGCTCGGG	.	28	10	39	0	.	279	163	116	0	0
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178285080	178285080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGPS-92	NM_003659	exon2	c.G344T	p.G115V	TGACTGGGAAAAG	.	82	33	77	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179401241	179401241	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon357	c.G100233T	p.V33411V	CCAGGCCACAACA	.	56	25	51	0	.	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179410344	179410344	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon344	c.T95493A	p.P31831P	AGATTCAGGTTTT	.	286	130	208	1	.	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179445148	179445148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon317	c.C66958T	p.R22320C	CACAGCGCAAGAA	.	139	57	117	1	.	0	0	0	0	0
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187627230	187627230	+	Missense_Mutation	SNP	G	G	A	rs144563922		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM171B-141	NM_177454	exon8	c.G2161A	p.E721K	AAGCTCGAGAGGG	.	135	69	108	0	G|1.000;A|0.000	1	0	1	0	0
TFPI	7035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	188348876	188348876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TFPI-91	NM_001032281	exon6	c.A603C	p.Q201H	GGTTGATTGCGGA	.	90	44	72	0	.	11	11	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436531	190436531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.A424T	p.I142F	TTGCAATATTTGC	.	213	71	161	0	.	10	10	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436542	190436542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.C413G	p.T138S	GCAATAGTGATGA	.	190	61	153	0	.	21	20	1	0	0
DNAH7	56171	hgsc.bcm.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	T	-	rs71015736		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon23	c.3770delA	p.N1257fs	CTAATATTTTTTT	.	355	150	320	1	T|1.000;|0.000	0	0	0	0	0
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196799351	196799351	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon21	c.T3435A	p.V1145V	TAATTCAACCAAC	.	174	63	157	2	.	0	0	0	0	0
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196837087	196837087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon16	c.C1937A	p.S646Y	GCTGGAGAAAAGT	.	175	76	139	0	.	0	0	0	0	0
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197143276	197143276	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECW2-668	NM_020760	exon15	c.G3111A	p.R1037R	GCGTTGCCTTGTC	.	209	83	148	0	.	1	1	0	0	0
ANKRD44	91526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197865169	197865169	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD44-230	NM_001195144	exon23	c.C2493T	p.I831I	ACTGACGATACTG	.	128	68	113	1	.	4	3	1	0	0
MARS2	92935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198571904	198571904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARS2-92	NM_138395	exon1	c.G1775A	p.R592Q	CCCACCGGACCTA	.	67	25	79	0	.	47	26	21	0	0
C2orf69	205327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200789972	200789972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C2orf69-23	NM_153689	exon2	c.C521T	p.A174V	TTGGTGCCCCAGA	.	171	81	136	2	.	36	21	15	0	0
BZW1	9689	hgsc.bcm.edu	37	2	201677182	201677182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BZW1-90	NM_001207068	exon1	c.C52T	p.R18C	GTGGTCCGCTCGT	.	13	6	0	0	.	0	0	0	0	0
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202520986	202520986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPP4-22	NM_033066	exon17	c.C1235T	p.P412L	TCGTAAGGGGCAC	.	537	237	414	0	.	0	0	0	0	0
ALS2	57679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202619338	202619338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALS2-275	NM_020919	exon6	c.A1528T	p.T510S	TGGGGGTCAGAAC	.	112	40	99	1	.	4	4	0	0	0
FZD7	8324	bcgsc.ca	37	2	202900893	202900893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD7-659	NM_003507	exon1	c.G1523A	p.C508Y	AGACGTGCAAGAG	.	132	59	100	2	.	7	2	5	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204032081	204032081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.G5908A	p.E1970K	AAAAAAGAGGTAT	.	37	16	43	0	.	0	0	0	0	0
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207635989	207635989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD2-118	NM_001136193	exon4	c.C965T	p.P322L	ATGCACCGATTGC	.	60	23	51	0	.	56	27	29	0	0
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208725974	208725974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLEKHM3-23	NM_001080475	exon7	c.A1963G	p.K655E	CCAGCTTTCCCTC	.	120	50	97	0	.	3	0	3	0	0
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYGD-90	NM_006891	exon3	c.475delG	p.A159fs	TCGTGGCCCCCCA	.	106	39	91	0	.	0	0	0	0	0
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212589889	212589889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERBB4-1461	NM_001042599	exon6	c.A653G	p.D218G	CTGCCGTCACATT	.	298	120	217	2	.	0	0	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216244003	216244003	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FN1-584	NM_212482	exon34	c.C5472T	p.V1824V	GGGTGTGACCTGA	.	197	96	147	0	.	212	143	68	0	1
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218686598	218686598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNS1-156	NM_022648	exon23	c.C3125G	p.S1042C	GGCTCAGAGTCCT	.	204	86	176	2	.	30	17	13	0	0
TMBIM1	64114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219146728	219146728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMBIM1-90	NM_022152	exon2	c.G137A	p.G46D	CCGTAGCCAGGCT	.	139	66	95	1	.	44	15	29	0	0
SLC11A1	6556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219251383	219251383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC11A1-93	NM_000578	exon5	c.C419A	p.T140N	GGCTGACCATCGA	.	94	50	76	0	.	1	1	0	0	0
CHPF	79586	hgsc.bcm.edu	37	2	220406784	220406784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHPF-90	NM_024536	exon2	c.G442A	p.V148M	ACACCACACGCTC	.	91	44	4	0	.	88	44	44	0	0
SGPP2	130367	ucsc.edu;bcgsc.ca	37	2	223423173	223423173	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGPP2-91	NM_152386	exon5	c.T756C	p.C252C	CGTGTGTGTCATA	.	383	172	287	3	.	33	12	21	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225652093	225652093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK10-92	NM_014689	exon49	c.T5440C	p.Y1814H	ACATGTATAGCTG	.	115	40	93	0	.	15	9	6	0	0
SLC16A14	151473	hgsc.bcm.edu;bcgsc.ca	37	2	230911202	230911203	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC16A14-96	NM_152527	exon4	c.639_640del	p.213_214del	TACCAGGAGAGAG	.	98	51	71	1	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIGYF2-28	NM_001103147	exon11	c.A607C	p.N203H	AGACCAAATTTTG	.	64	31	86	0	.	0	0	0	0	0
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234091058	234091058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INPP5D-652	.	.	.	.	GCAGGCAGTACCA	.	254	117	182	0	.	0	0	0	0	0
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234854560	234854560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPM8-94	NM_024080	exon7	c.G760A	p.D254N	ATCCTGGACAACA	.	137	61	127	1	.	0	0	0	0	0
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238672429	238672431	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRFIP1-153	NM_001137552	exon11	c.2073_2075del	p.691_692del	GAGGGCTGGTGGT	.	230	78	203	0	.	0	0	0	0	0
SCLY	51540	broad.mit.edu;bcgsc.ca	37	2	238990850	238990850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCLY-92	NM_016510	exon6	c.G801T	p.K267N	GCACAAGGTAAGT	.	275	109	188	2	.	0	0	0	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237830	239237830	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRAF3IP1-228	NM_015650	exon5	c.762delG	p.E254fs	GAGTGAGGGGGGG	.	308	8	238	0	.	0	0	0	0	0
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240085574	240085574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC4-291	NM_006037	exon6	c.T536A	p.V179D	TTGAGGACAAATT	.	135	50	126	0	.	6	4	2	0	0
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463346	241463346	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKMY1-90	NM_016552	exon7	c.C1521T	p.S507S	GTCGAAGCTGCTG	.	170	78	142	0	.	9	3	6	0	0
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T	rs193086300	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNPEPL1-154	NM_018226	exon10	c.C1864T	p.R622W	AGGGTGCGGCGCT	.	195	76	117	0	C|0.999;T|0.000	113	58	55	0	0
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241569558	241569558	+	Silent	SNP	G	G	A	rs201529824		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR35-93	NM_001195382	exon6	c.G282A	p.A94A	CCTGGCGGTGGCC	.	97	49	58	1	G|0.999;A|0.000	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241737134	241737134	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1A-91	NM_001244008	exon2	c.C36T	p.V12V	GGGGCGGACCCGC	.	69	30	48	0	.	0	0	0	0	0
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242573029	242573029	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015963	exon2	c.C543T	p.T181T	CACCATGGTGGCC	.	87	37	76	0	.	87	52	35	0	0
D2HGDH	728294	hgsc.bcm.edu	37	2	242674750	242674750	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152783	exon2	c.C111T	p.C37C	CTGCTGCTCCGCC	.	52	28	5	0	.	2	2	0	0	0
ANGPT4	51378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	896570	896570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANGPT4-92	NM_015985	exon1	c.C288A	p.N96K	CGTGTTGTTCTGC	.	85	71	117	1	.	0	0	0	0	0
FASTKD5	60493	hgsc.bcm.edu;bcgsc.ca	37	20	3128001	3128001	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD5-90	NM_021826	exon2	c.1716delG	p.G572fs	CTGGGGCCCCCCC	.	61	40	79	1	.	0	0	0	0	0
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3546042	3546042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATRN-154	NM_139321	exon11	c.G1834T	p.V612F	CATGATGTCAACA	.	44	28	80	0	.	26	2	24	0	0
CENPB	1059	ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3765726	3765726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPB-227	NM_001810	exon1	c.G1405T	p.E469X	AGCCCTCCGAGGA	.	145	112	167	4	.	90	9	81	0	0
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13850197	13850197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEL1L2-70	NM_001271539	exon14	c.G1207A	p.E403K	CTTTTTCCGCAGC	.	91	70	124	0	.	0	0	0	0	0
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD93-153	NM_012072	exon1	c.1312delC	p.L438fs	CGCAGAGGGGGCC	.	56	43	84	0	.	0	0	0	0	0
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33874418	33874418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM83C-92	NM_178468	exon4	c.C2164A	p.L722M	GACCCAGGGTCAG	.	193	21	172	0	.	0	0	0	0	0
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022048	34022048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GDF5-226	NM_000557	exon2	c.G1165T	p.G389C	GCTTGCCCTGGCG	.	146	63	114	1	.	0	0	0	0	0
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35288763	35288763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_032013	exon13	c.C835T	p.P279S	TTATAGGGTTCAG	.	99	24	51	0	.	94	94	0	0	0
NDRG3	57446	hgsc.bcm.edu	37	20	35350111	35350111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_022477	exon2	c.A28G	p.T10A	TCTCTGTGAGCTG	.	100	6	72	0	.	30	30	0	0	0
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35776252	35776252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	GTGGGTCCCCACA	.	56	22	53	0	.	1	0	1	0	0
RPN2	6185	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35833240	35833240	+	Missense_Mutation	SNP	C	C	T	rs145802754		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPN2-93	NM_002951	exon6	c.C626T	p.A209V	CAACAGCGTTATT	.	205	87	167	1	C|1.000;T|0.000	473	256	216	0	1
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35833294	35833294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPN2-93	NM_002951	exon6	c.C680T	p.S227F	AGCCATCCATTAA	.	158	66	115	0	.	0	0	0	0	0
TGM2	7052	broad.mit.edu;bcgsc.ca	37	20	36767875	36767875	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGM2-155	NM_198951	exon9	c.C1281T	p.S427S	CTTAGTGCTGATC	.	308	18	247	2	.	65	63	2	0	0
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36997687	36997687	+	Missense_Mutation	SNP	C	C	T	rs146665734	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LBP-91	NM_004139	exon10	c.C1030T	p.P344S	TCAGTGCCCTCTG	.	86	35	59	0	C|1.000;T|0.000	0	0	0	0	0
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39830791	39830791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZHX3-93	NM_015035	exon3	c.G2766T	p.E922D	AGACACCTCTGAA	.	164	69	129	0	.	25	16	9	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713472	40713472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRT-664	NM_133170	exon30	c.A4043C	p.Y1348S	ATACGATAACCAT	.	169	78	136	0	.	0	0	0	0	0
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788359	42788359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JPH2-91	NM_020433	exon2	c.G1068A	p.Q356Q	CTTGAGCTGCAGC	.	163	74	90	1	.	2	0	2	0	0
WISP2	8839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43348580	43348580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WISP2-130	NM_003881	exon2	c.C103A	p.P35T	CCCTGGCCACCTC	.	117	52	98	0	.	100	90	10	0	0
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43726370	43726370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNS1-90	NM_002251	exon4	c.G1043A	p.R348H	AAGATGCGCATGA	.	166	87	121	0	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	7	0	7	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44486488	44486488	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZSWIM3-92	NM_080752	exon1	c.G24A	p.K8K	CTTCAAGACCTAT	.	117	6	94	0	.	1	1	0	0	0
ZNF335	63925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44586256	44586256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF335-94	NM_022095	exon17	c.C2411T	p.A804V	CGCTGAGCACTCA	.	119	31	108	1	.	3	2	1	0	0
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45865241	45865241	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZMYND8-252	NM_183047	exon16	c.C2547T	p.I849I	CTGTGTGATCTCC	.	139	64	108	0	.	21	11	10	0	0
KCNB1	3745	ucsc.edu;bcgsc.ca	37	20	47991197	47991197	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNB1-92	NM_004975	exon2	c.C900A	p.R300R	CATGATGCGGAAG	.	202	84	192	2	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	9	8	0	0	C|0.999;T|0.001	3	0	3	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49508387	49508387	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADNP-92	NM_015339	exon5	c.G2864C	p.S955T	ACCTCACTATCAG	.	257	97	247	0	.	104	50	54	0	0
ZFP64	55734	broad.mit.edu;bcgsc.ca	37	20	50769338	50769338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP64-155	NM_018197	exon6	c.A1393T	p.I465F	GGTCGATCTGAAA	.	108	40	83	2	.	9	3	6	0	0
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872146	51872146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSHZ2-232	NM_173485	exon2	c.T2149C	p.S717P	TCACCTTCCTGCT	.	136	55	106	1	.	9	5	4	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	57429537	57429537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNAS-4767	NM_080425	exon1	c.C1217A	p.A406E	CCGGGGCAACCCC	.	53	22	24	0	.	0	0	0	0	0
SS18L1	26039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60738545	60738545	+	Silent	SNP	G	G	A	rs149920292	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SS18L1-660	NM_198935	exon6	c.G588A	p.S196S	CACGTCGCACTAC	.	169	73	61	0	G|0.999;A|0.001	7	4	3	0	0
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	60887715	60887715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA5-93	NM_005560	exon67	c.9200delG	p.G3067fs	GGCACGCCCCCCA	.	245	83	66	0	.	0	0	0	0	0
OGFR	11054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61444339	61444339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OGFR-68	NM_007346	exon7	c.C1372T	p.R458W	AGGAAGCGGAGGA	.	170	61	84	1	.	23	14	9	0	0
DIDO1	11083	broad.mit.edu	37	20	61511207	61511207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIDO1-96	NM_001193369	exon16	c.6101delC	p.P2034fs	TGCTGCGGGGGGT	.	15	7	4	0	.	0	0	0	0	0
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62178771	62178773	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRMS-521	NM_080823	exon1	c.44_46del	p.15_16del	TGTCCCAGAAGAA	.	131	0	29	0	.	0	0	0	0	0
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10916394	10916394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPTE-344	NM_199261	exon20	c.C1252T	p.H418Y	TGAAGTGTTTTAT	.	432	52	469	1	.	6	6	0	0	0
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15481359	15481359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIPI-70	NM_198996	exon10	c.G1401A	p.E467E	CACTTCCTCTCTG	.	59	28	72	0	.	0	0	0	0	0
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	16337877	16337877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRIP1-186	NM_003489	exon4	c.T2637A	p.D879E	TGCAGCATCAACA	.	71	37	69	0	.	9	5	4	0	0
ADAMTS1	9510	hgsc.bcm.edu	37	21	28217129	28217129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS1-272	NM_006988	exon1	c.G145A	p.A49T	CGAGTGCGTCCGA	.	87	41	6	0	.	6	6	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32585718	32585718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TIAM1-724	NM_003253	exon11	c.G2213A	p.G738D	ACCTTGCCATCTG	.	78	36	71	0	.	0	0	0	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33063193	33063193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF4-90	NM_020706	exon15	c.A1802T	p.Y601F	GGAATATAAGTAA	.	170	65	158	0	.	20	14	6	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33068463	33068463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF4-90	NM_020706	exon9	c.G1031A	p.R344Q	ATCATTCGTGGCT	.	135	48	112	0	.	17	7	10	0	0
SON	6651	ucsc.edu;bcgsc.ca	37	21	34922970	34922970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SON-97	NM_032195	exon3	c.A1433G	p.E478G	CACAGGAGTTGCC	.	552	230	495	5	.	39	20	19	0	0
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35166743	35166743	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITSN1-94	NM_001001132	exon17	c.A1923G	p.E641E	CATAGAATTAGAA	.	220	111	154	0	.	14	11	3	0	0
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43510406	43510406	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_001199527	exon6	c.575-2A>T	.	CCCTGTAGATGTC	.	162	81	144	0	.	0	0	0	0	0
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43531012	43531012	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_173568	exon11	c.C1680T	p.G560G	CATGGGCGGTGGA	.	293	145	241	0	.	0	0	0	0	0
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43864737	43864737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBASH3A-93	NM_018961	exon14	c.C1832T	p.A611V	ATTTTGCCCAACT	.	86	39	61	0	.	2	0	2	0	0
DNMT3L	29947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45666373	45666373	+	Silent	SNP	C	C	T	rs145238695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNMT3L-228	NM_013369	exon12	c.G1071A	p.A357A	CTTGGCCGCGAGC	.	133	67	107	2	C|0.998;T|0.002	0	0	0	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744513	45744513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PFKL-251	NM_002626	exon17	c.A1790G	p.D597G	TCGAGGACCCTTT	.	124	53	80	0	.	184	112	72	0	0
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	210	32	214	0	G|0.917;A|0.083	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.282delC	p.P94fs	CTGGCAGGGGGAG	.	268	86	112	0	.	0	0	0	0	0
KRTAP10-4	386672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45994477	45994477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-4-90	NM_198687	exon1	c.G842A	p.C281Y	TGTGCTGCAAGCC	.	226	103	186	1	.	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46020976	46020976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198689	exon2	c.C440T	p.T147I	GCTGCACCTCCTC	.	439	170	428	1	.	0	0	0	0	0
KRTAP10-9	386676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46047555	46047555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198690	exon1	c.C467T	p.S156F	CCTGCTCTGAGGA	.	341	165	321	2	.	0	0	0	0	0
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46689778	46689778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POFUT2-90	NM_015227	exon7	c.G988T	p.V330L	TGGCCACAAACAC	.	97	35	95	0	.	54	26	28	0	0
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47321002	47321002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBP3-227	NM_001130141	exon5	c.C314T	p.A105V	CCTTTGCCATGAT	.	75	28	60	0	.	3	1	2	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47836750	47836750	+	Silent	SNP	T	T	C	rs61738290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNT-141	NM_006031	exon30	c.T6918C	p.A2306A	GACGGCTGTGGTA	.	17	7	5	0	T|0.969;C|0.031	0	0	0	0	0
PCNT	5116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47858133	47858133	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNT-141	NM_006031	exon41	c.T9156C	p.N3052N	AGACAATGTTTCC	.	292	112	220	1	.	30	8	22	0	0
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17073304	17073304	+	Missense_Mutation	SNP	A	A	G	rs140831516	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCT8L2-69	NM_014406	exon1	c.T137C	p.V46A	CGGATGACACTGG	.	80	30	61	0	A|1.000;T|0.000	0	0	0	0	0
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17472963	17472963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GAB4-91	NM_001037814	exon2	c.C278A	p.T93N	TTGATGGTGCGCA	.	186	80	169	0	.	0	0	0	0	0
IL17RA	23765	hgsc.bcm.edu	37	22	17590180	17590180	+	Missense_Mutation	SNP	G	G	A	rs41323645		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL17RA-92	NM_014339	exon13	c.G2071A	p.A691T	GGTGCCGCAGTCC	.	11	8	0	0	G|0.897;A|0.103	2	1	1	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18301894	18301894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MICAL3-68	NM_015241	exon26	c.G3533T	p.G1178V	TGGGGCCCCTACA	.	57	27	40	0	.	0	0	0	0	0
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18609562	18609562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBA8-90	NM_018943	exon4	c.G817A	p.A273T	ACCTACGCGCCCA	.	260	20	171	0	.	10	10	0	0	0
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19207427	19207427	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLTCL1-230	NM_001835	exon18	c.G2886A	p.E962E	GTTGGTCTCCTCA	.	184	74	122	2	.	29	19	10	0	0
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	19373067	19373067	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIRA-91	NM_003325	exon12	c.1306delG	p.E436fs	GACTCTCCCCGTT	.	146	60	123	0	.	0	0	0	0	0
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20100332	20100332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT2A-153	NM_001257994	exon12	c.1654delC	p.L552fs	GGAAAAGGGGGGC	.	27	11	26	0	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	13	13	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	14	14	0	0	G|0.826;C|0.174	0	0	0	0	0
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20812147	20812147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL22-278	NM_032775	exon5	c.G1253A	p.R418H	TCGTAGCGCTCCA	.	154	69	161	0	.	31	18	13	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21172828	21172828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PI4KA-454	NM_058004	exon7	c.G799T	p.E267X	CGCGTTCAGGGCT	.	54	16	55	0	.	0	0	0	0	0
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21334397	21334397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AIFM3-280	NM_001146288	exon19	c.C1759T	p.R587W	GCCATCCGGAAGC	.	69	28	45	0	.	5	3	2	0	0
HIC2	23119	hgsc.bcm.edu	37	22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIC2-703	NM_015094	exon3	c.475delC	p.P159fs	GGGCGGCCCCCCC	.	42	14	9	1	.	0	0	0	0	0
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21988695	21988695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon3	c.A457T	p.S153C	CCATCCAGCTCCA	.	127	60	110	0	.	0	0	0	0	0
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21989306	21989306	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon4	c.C954T	p.S318S	GGTCAGCCAGGCT	.	144	63	104	0	.	1	1	0	0	0
MAPK1	5594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22153374	22153374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK1-1405	NM_002745	exon4	c.A536G	p.D179G	GTGTGATCATGGT	.	126	61	115	2	.	128	71	56	0	1
PPM1F	9647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22277674	22277674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPM1F-292	NM_014634	exon8	c.G1156A	p.G386R	GGAGCCCGCTGCC	.	162	67	66	1	.	20	7	13	0	0
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	23637231	23637231	+	Silent	SNP	G	G	A	rs200598253		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCR-1349	NM_004327	exon16	c.G2901A	p.E967E	GCTGGAGGGCTCC	.	254	95	192	0	G|1.000;A|0.000	100	50	50	0	0
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236679	24236679	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.A18T	p.V6V	CATCGTAAACACC	.	357	144	170	0	.	1773	1772	0	0	1
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236682	24236682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.C21A	p.N7K	CGTAAACACCAAC	.	354	144	168	0	.	1832	1826	4	1	0
MIF	4282	hgsc.bcm.edu	37	22	24237111	24237111	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon2	c.C261T	p.R87R	CGAGCGCCTGCGC	.	30	17	2	0	.	4238	1876	2358	2	2
CRYBB3	1417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25601272	25601272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYBB3-90	NM_004076	exon5	c.G413A	p.G138D	TGCCCAGCCTGTG	.	279	127	227	0	.	3	2	1	0	0
ASCC2	84164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30197089	30197089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASCC2-90	NM_032204	exon15	c.C1579T	p.P527S	GGTCTGGTTTCAT	.	87	36	85	1	.	0	0	0	0	0
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	30639991	30639991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIF-650	NM_001257135	exon2	c.G79A	p.D27N	GTCCGTCACGTTG	.	146	65	108	0	.	2	2	0	0	0
PATZ1	23598	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31740473	31740473	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PATZ1-590	NM_032050	exon1	c.G1116A	p.R372R	CTTGTGCCGGTTA	.	191	84	125	1	.	20	11	9	0	0
PATZ1	23598	broad.mit.edu;bcgsc.ca	37	22	31741473	31741473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PATZ1-590	NM_032050	exon1	c.G116T	p.R39L	CAGAAGCGCCCGC	.	274	129	131	2	.	5	1	4	0	0
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35815946	35815946	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCM5-228	NM_006739	exon14	c.C1773T	p.S591S	GCGGAGCGGGGCC	.	384	162	202	0	.	84	40	44	0	0
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36055125	36055125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOL6-90	NM_030641	exon3	c.T514A	p.Y172N	ATTATCTATAATC	.	68	35	55	0	.	9	3	6	0	0
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36902258	36902258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXRED2-92	NM_001102371	exon2	c.G212A	p.R71H	GGGTAGCGTGTGA	.	166	68	104	0	.	21	14	7	0	0
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37398216	37398216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001163857	exon3	c.C151A	p.P51T	GCAGGGGCTGTGG	.	94	43	80	0	.	0	0	0	0	0
SSTR3	6753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	37602677	37602677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SSTR3-522	NM_001051	exon2	c.C1166A	p.P389H	CTGCTGGGCGGCC	.	80	40	34	1	.	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37891531	37891531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD10-662	NM_014550	exon15	c.G2366A	p.R789H	TTACTGCGGGGGC	.	42	19	41	0	.	0	0	0	0	0
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38205970	38205970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GCAT-90	NM_001171690	exon2	c.A211G	p.I71V	ACTGTCATCTTTC	.	142	61	116	0	.	0	0	0	0	0
GALR3	8484	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	38221167	38221167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALR3-90	NM_003614	exon2	c.G797A	p.S266N	CCTTCAGCCCGGC	.	87	35	15	0	.	0	0	0	0	0
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38620883	38620883	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM184B-68	NM_001195071	exon8	c.C891T	p.F297F	GATGATGAAGTCC	.	208	76	157	1	.	52	27	25	0	0
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41257875	41257877	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJB7-227	NM_145174	exon1	c.122_124del	p.41_42del	TCTCTGCTTCTTC	.	51	17	58	0	.	0	0	0	0	0
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41621937	41621937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	L3MBTL2-92	NM_031488	exon12	c.C1496T	p.P499L	TCACACCGCCAAA	.	87	35	81	0	.	1	1	0	0	0
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	41631316	41631316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHADL-68	NM_138481	exon5	c.G2095T	p.A699S	AGGTGGCCCCCAC	.	38	16	16	0	.	0	0	0	0	0
FAM109B	150368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42473559	42473559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM109B-90	NM_001002034	exon3	c.G262A	p.A88T	GCCTTTGCCATCT	.	110	46	79	0	.	1	1	0	0	0
A4GALT	53947	hgsc.bcm.edu;broad.mit.edu	37	22	43089757	43089757	+	Frame_Shift_Del	DEL	G	G	-	rs67879429		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	A4GALT-90	NM_017436	exon3	c.201delC	p.P67fs	TGGGGTGGGGGGT	.	36	17	19	0	.	0	0	0	0	0
PPARA	5465	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46627995	46627995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPARA-611	NM_001001928	exon7	c.A1018G	p.T340A	TTTATAACTCGTG	.	243	100	208	2	.	3	1	2	0	0
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46654833	46654833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.T4387C	p.S1463P	GAGGAGATACCTC	.	100	29	91	1	.	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46657944	46657944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G1276A	p.D426N	CGTGGTCGCCTTT	.	140	73	111	0	.	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	46658470	46658470	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G750C	p.P250P	CGCGGCCGGGCAG	.	175	79	15	0	.	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46835094	46835094	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR1-525	NM_014246	exon3	c.C4398T	p.I1466I	GAGGGAGATGGTG	.	156	59	122	0	.	0	0	0	0	0
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46931004	46931004	+	Silent	SNP	C	C	T	rs200980756		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR1-525	NM_014246	exon1	c.G2064A	p.T688T	GGGCTGCGTGAAC	.	84	36	69	1	C|0.999;T|0.000	0	0	0	0	0
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50636363	50636363	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRABD-90	NM_025204	exon8	c.C783T	p.V261V	CGACGTCTACCTA	.	144	69	62	0	.	21	9	12	0	0
MAPK11	5600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50705599	50705599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK11-1402	NM_002751	exon6	c.T452C	p.L151P	GGCTTCAGGTCCT	.	146	55	51	0	.	0	0	0	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51160574	51160574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHANK3-69	NM_033517	exon21	c.C4271T	p.S1424L	AGTCCTCGGACAG	.	71	30	18	0	.	13	3	10	0	0
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9488930	9488930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD5-70	NM_001080517	exon14	c.T1721A	p.V574D	CAAATGTTACCAT	.	50	46	82	0	.	8	0	8	0	0
RFTN1	23180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	16475383	16475383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RFTN1-93	NM_015150	exon3	c.G307A	p.A103T	GGATGGCTCTAAA	.	101	80	162	0	.	11	10	1	0	0
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29941226	29941226	+	Missense_Mutation	SNP	C	C	T	rs202069394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBMS3-90	NM_001177712	exon11	c.C958T	p.P320S	CATCCGCCATACG	.	46	28	54	0	C|0.999;T|0.000	1	1	0	0	0
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30903251	30903251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GADL1-90	NM_207359	exon2	c.T44A	p.I15N	TGATCAATATCTC	.	37	27	83	0	.	0	0	0	0	0
CMTM8	152189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32398985	32398985	+	Missense_Mutation	SNP	A	A	T	rs141869614	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CMTM8-90	NM_178868	exon2	c.A268T	p.I90F	CTCATTATCTACA	.	73	52	111	2	A|1.000;G|0.000	33	6	27	0	0
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33419633	33419633	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL2-289	NM_012157	exon12	c.C888T	p.C296C	AGAATGCATCCTG	.	65	49	105	0	.	0	0	0	0	0
UBP1	7342	bcgsc.ca	37	3	33458280	33458280	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBP1-537	NM_001128160	exon3	c.T312A	p.D104E	AGGCATATCACCC	.	199	144	338	5	.	0	0	0	0	0
PDCD6IP	10015	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	33883509	33883509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD6IP-228	NM_001162429	exon10	c.T1317G	p.D439E	TGTTGATCAGTTG	.	265	183	409	2	.	73	7	66	0	0
MLH1	4292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37083763	37083763	+	Nonsense_Mutation	SNP	G	G	T	rs63751081		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLH1-2559	NM_000249	exon15	c.G1672T	p.E558X	AGTGAAGAACTGT	.	44	33	73	2	.	0	0	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921457	38921457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN11A-99	NM_014139	exon19	c.A3377T	p.D1126V	ATGAAATCAAGGC	.	52	31	91	0	.	0	0	0	0	0
ULK4	54986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41759264	41759264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK4-297	NM_017886	exon23	c.A2411G	p.D804G	AGAAGATCCAGGC	.	68	53	101	0	.	1	0	1	0	0
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42738492	42738492	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HHATL-93	NM_020707	exon9	c.1010+1G>A	.	CACTCACGTTTCC	.	106	86	155	0	.	0	0	0	0	0
KIAA1143	57456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44803069	44803069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1143-90	NM_020696	exon1	c.A26G	p.Y9C	CGCACGTACGATA	.	88	71	132	1	.	39	5	34	0	0
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45942503	45942503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR9-660	NM_031200	exon3	c.T223C	p.Y75H	TACTGGTACTGCA	.	196	144	245	2	.	0	0	0	0	0
NBEAL2	23218	ucsc.edu;bcgsc.ca	37	3	47041809	47041809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL2-69	NM_015175	exon27	c.C4220A	p.S1407Y	ACAGCTCCAGTCT	.	126	96	197	3	.	1	0	1	0	0
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47378243	47378243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL18-90	NM_025010	exon7	c.A1117G	p.R373G	AGCAAGAGAAGGT	.	174	134	253	0	.	0	0	0	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47458817	47458817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAP-91	NM_012235	exon17	c.G2947T	p.G983W	TCCGCCCCACCAC	.	53	43	61	0	.	197	4	193	0	0
ARIH2OS	646450	hgsc.bcm.edu	37	3	48956411	48956411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001123040	exon1	c.C172T	p.P58S	TCAGCGGCCGCGA	.	9	8	0	0	.	9	0	9	0	0
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49846424	49846424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA7-228	NM_003335	exon18	c.G2332C	p.A778P	CAGAAGCCGAAGC	.	76	61	133	0	.	14	3	11	0	0
DOCK3	1795	hgsc.bcm.edu;bcgsc.ca	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK3-22	NM_004947	exon52	c.5549delC	p.T1850fs	GTGATACCCCCCC	.	54	47	52	1	.	0	0	0	0	0
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51968549	51968549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RRP9-154	NM_004704	exon13	c.T1199C	p.V400A	AGCCGCACACAGG	.	244	184	338	1	.	22	2	20	0	0
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52085041	52085041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon3	c.G1050A	p.M350I	CAGGTTCATCTTC	.	94	73	90	0	.	5	3	2	0	0
DUSP7	1849	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	52088244	52088244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.G664A	p.D222N	CTCGGTCCGACTC	.	144	108	156	0	.	1	1	0	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52438537	52438537	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAP1-1032	NM_004656	exon12	c.C1182T	p.Y394Y	ATCTGAGTACTGC	.	103	83	133	1	.	4	2	2	0	0
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52457218	52457218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHF7-153	NM_016483	exon11	c.C1031G	p.T344S	CTTGGACTGATTG	.	188	152	252	1	.	7	1	6	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52543970	52543970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAB1-139	NM_015136	exon23	c.G2432A	p.S811N	GCTTCAGTGGCCG	.	134	108	159	0	.	4	4	0	0	0
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57616494	57616494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152678	exon17	c.A1465T	p.T489S	GTCCTGTTTTCTC	.	30	23	52	0	.	6	0	6	0	0
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58255106	58255106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABHD6-92	NM_020676	exon4	c.C335T	p.T112I	GCACCACCCGCTC	.	173	135	207	1	.	31	0	31	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64133284	64133284	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRICKLE2-95	NM_198859	exon7	c.G882A	p.G294G	TGGCCGCCCCAGG	.	81	3	105	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0
CNTN3	5067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74548830	74548830	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNTN3-137	NM_020872	exon2	c.C162T	p.G54G	TGGATTGCCTCTT	.	16	14	42	1	.	0	0	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77147394	77147394	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROBO2-328	NM_002942	exon2	c.C291T	p.H97H	CGTGCACGGGCGC	.	246	206	333	0	.	0	0	0	0	0
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	81635291	81635291	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBE1-25	NM_000158	exon10	c.T1287C	p.G429G	AAAACCACCCCCT	.	34	27	50	0	.	75	1	74	0	0
ABI3BP	25890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100508327	100508327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABI3BP-138	NM_015429	exon24	c.G2000A	p.R667K	GATGTTCTGGGCC	.	42	40	77	2	.	4	0	4	0	0
WDR52	55779	bcgsc.ca	37	3	113145006	113145006	+	Silent	SNP	C	C	T	rs73239107	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR52-90	NM_001164496	exon4	c.G372A	p.L124L	TGAATCCAGAGTC	.	118	5	159	0	C|0.832;T|0.168	0	0	0	0	0
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	115529261	115529261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LSAMP-90	NM_002338	exon7	c.G920A	p.R307K	CCAGGTCCTGCAG	.	130	107	186	0	.	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068007	120068007	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099678	exon1	c.G84T	p.L28L	AGACTCCAGCGTC	.	6	6	0	0	.	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	6	6	0	0	C|0.826;G|0.174	0	0	0	0	0
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125298757	125298757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSBPL11-135	NM_022776	exon3	c.C361T	p.H121Y	AGGTGTGAGAATC	.	41	32	72	0	.	12	0	12	0	0
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128853775	128853775	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ISY1-90	NM_001199469	exon9	c.A507T	p.T169T	AGCACGTGTCTTT	.	38	27	88	0	.	53	11	42	0	0
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129546844	129546844	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMCC1-91	NM_001017395	exon3	c.C378A	p.G126G	TGGCTTGCCCCGC	.	59	41	95	1	.	7	1	6	0	0
ATP2C1	27032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130720162	130720162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP2C1-91	NM_001199181	exon27	c.A2830C	p.S944R	CATGTTAGTTCGA	.	83	60	96	1	.	30	4	26	0	0
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132179933	132179933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJC13-272	NM_015268	exon15	c.G1597A	p.D533N	CTCTTGGACTTCC	.	100	81	160	0	.	3	1	2	0	0
CCRL1	51554	hgsc.bcm.edu	37	3	132321037	132321037	+	RNA	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCRL1-658	.	.	.	.	AGCAATAAAAAAA	.	18	10	38	0	.	0	0	0	0	0
TF	7018	ucsc.edu;bcgsc.ca	37	3	133467410	133467410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TF-92	NM_001063	exon2	c.T198A	p.D66E	CCTTGATTGCATC	.	216	165	299	2	.	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	150127417	150127417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSC22D2-91	NM_014779	exon1	c.C280A	p.L94M	GGGCAGCTGGCAG	.	67	54	93	0	.	0	0	0	0	0
CCNL1	57018	hgsc.bcm.edu;mdanderson.org	37	3	156877880	156877880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNL1-659	NM_020307	exon1	c.G4A	p.A2T	CGGACGCCATAGT	.	38	30	8	0	.	9	0	9	0	0
TRIM59	286827	broad.mit.edu	37	3	160156368	160156368	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM59-658	NM_173084	exon3	c.604delA	p.S202fs	GGAAACTTTTTTT	.	44	29	41	0	.	0	0	0	0	0
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLITRK3-100	NM_014926	exon2	c.G2902A	p.E968K	GGACTTCGAGGTA	.	73	55	130	1	.	0	0	0	0	0
PDCD10	11235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167414893	167414893	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD10-659	NM_145860	exon4	c.C172G	p.L58V	GTGTGAGACCTGG	.	15	10	39	0	.	16	1	15	0	0
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169514632	169514632	+	Missense_Mutation	SNP	G	G	A	rs201395437		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC34-90	NM_001172779	exon8	c.C809T	p.A270V	TGTAGTGCAACAA	.	70	52	167	0	G|0.999;A|0.001	1	1	0	0	0
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172165571	172165571	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GHSR-501	NM_198407	exon1	c.G633T	p.T211T	CATGACCGTGAGC	.	121	95	210	1	.	0	0	0	0	0
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	175165096	175165096	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAALADL2-47	NM_207015	exon6	c.G1170T	p.L390L	AAAACTGATCTCT	.	48	39	60	0	.	4	0	4	0	0
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182538053	182538053	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP11B-93	NM_014616	exon2	c.T33C	p.F11F	GGGTTTTGACCCA	.	62	52	80	0	.	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183953046	183953046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon7	c.G1051A	p.A351T	GGGACAGCTACTC	.	118	80	194	0	.	27	0	27	0	0
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183957477	183957477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon15	c.G2393A	p.G798E	CCCCAGGAAACCT	.	60	50	75	0	.	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959354	183959354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138345	exon19	c.G3257T	p.R1086L	AGGAGCGCCTCTG	.	65	53	6	0	.	35	0	35	0	0
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183962454	183962454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_005787	exon5	c.C661T	p.L221F	GGAGAAGAAACAG	.	26	18	43	1	.	64	4	60	0	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184049834	184049834	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF4G1-344	NM_001194946	exon33	c.C4599T	p.Y1533Y	GCTCTACGCCCTC	.	114	6	185	0	.	287	267	19	0	1
POLR2H	5437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184083008	184083008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLR2H-90	NM_006232	exon3	c.C245T	p.P82L	ATAGGCCTTCCAG	.	101	76	206	0	.	1	0	1	0	0
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF12-949	NM_021032	exon3	c.C355T	p.Q119X	CTCCTTGGATGGC	.	167	136	200	0	.	0	0	0	0	0
ATP13A3	79572	bcgsc.ca	37	3	194162115	194162115	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP13A3-69	NM_024524	exon15	c.T1635A	p.C545X	TGAATGACAAGTA	.	108	74	234	5	.	1	0	1	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195511828	195511828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC4-90	NM_018406	exon2	c.6623delC	p.P2208fs	GGAAGAGGGGTGG	.	415	76	521	0	.	0	0	0	0	0
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	527709	527709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIGG-92	NM_001127178	exon12	c.T2674C	p.Y892H	GGGACGTACGCAG	.	301	112	206	0	.	50	23	27	0	0
IDUA	3425	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	996231	996231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IDUA-91	NM_000203	exon8	c.C1147T	p.R383C	CTGTTGCGCAAGC	.	183	87	36	1	.	8	4	4	0	0
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1164348	1164348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPON2-90	NM_012445	exon5	c.C653T	p.P218L	TGGCTGGGAGAGG	.	119	47	88	0	.	13	13	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIPAK-90	NM_175918	exon1	c.C518G	p.P173R	CGTGCCCATGTGG	.	166	42	25	0	CATGT|0.500;GACGC|0.500	64	64	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIPAK-90	NM_175918	exon1	c.T520C	p.C174R	TGCCCATGTGGAG	.	166	45	25	0	T|0.950;C|0.050	59	59	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	37	15	3	0	C|1.000;|0.000	13	2	11	0	0
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1989663	1989663	+	Missense_Mutation	SNP	G	G	A	rs145121989		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_005663	exon4	c.C649T	p.R217W	TCTTCCGCAGCAG	.	41	24	43	0	G|1.000;A|0.000	38	12	25	0	1
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	25	16	0	0	G|0.957;C|0.043	10	8	2	0	0
NOP14	8602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2948138	2948138	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOP14-91	NM_003703	exon12	c.1635+1G>T	.	TGCTTACCACATC	.	99	57	64	1	.	7	0	7	0	0
GRK4	2868	hgsc.bcm.edu;broad.mit.edu	37	4	3015470	3015470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRK4-507	NM_182982	exon8	c.656delA	p.Q219fs	AGCTACAAAAAAA	.	61	23	39	0	.	0	0	0	0	0
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3137678	3137678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon20	c.C2681T	p.A894V	GAGGGGCTCATCA	.	152	45	142	0	.	9	5	4	0	0
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240681	3240681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon66	c.C9191T	p.S3064F	GCGCGTCCACCAG	.	129	60	82	0	.	72	38	34	0	0
RGS12	6002	broad.mit.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS12-226	NM_002926	exon16	c.3526delA	p.K1176fs	ATTGGGAAAAAAA	.	147	13	100	0	.	0	0	0	0	0
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS12-226	NM_002926	exon17	c.3863delC	p.T1288fs	GGACGACCCCCCC	.	48	23	30	0	.	0	0	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495047	3495047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOK7-91	NM_173660	exon7	c.G1334A	p.G445D	CCTCTGGCTGGCT	.	52	19	2	0	.	0	0	0	0	0
ADRA2C	152	bcgsc.ca	37	4	3768889	3768889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADRA2C-522	NM_000683	exon1	c.C556T	p.P186S	TTCCCGCCGCTGG	.	139	55	55	2	.	9	2	7	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	100	29	6	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	69	17	4	0	.	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	5	5	0	0	A|0.036;G|0.964	1	0	1	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	rs871134		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC96-90	NM_153376	exon1	c.G286A	p.E96K	CGGGCTCGGGCTG	.	4	4	0	0	C|0.472;T|0.528	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583357	8583357	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR78-516	NM_080819	exon1	c.G648A	p.L216L	CGCGCTGCTCGCC	.	41	12	10	0	.	0	0	0	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401093	11401093	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HS3ST1-91	NM_005114	exon2	c.G537A	p.V179V	ATCGCGCACCAGG	.	201	6	185	1	.	0	0	0	0	0
LAP3	51056	hgsc.bcm.edu;bcgsc.ca	37	4	17585226	17585226	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAP3-90	NM_015907	exon5	c.500delA	p.Q167fs	TAAAGCAAAAAAA	.	217	101	154	2	.	0	0	0	0	0
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20731736	20731736	+	Missense_Mutation	SNP	C	C	T	rs149977507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNIP4-91	NM_025221	exon8	c.G662A	p.R221H	ATGGAGCGCATTA	.	93	37	93	0	C|1.000;T|0.000	1	1	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36214032	36214032	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARAP2-93	NM_015230	exon5	c.T1119C	p.F373F	GATGATAAAAGAG	.	48	18	63	0	.	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38119794	38119794	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D1-91	NM_015173	exon17	c.A2943T	p.G981G	GCTGGGATTCGTA	.	105	41	68	0	.	19	13	6	0	0
LIAS	11019	broad.mit.edu	37	4	39462464	39462464	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIAS-90	NM_194451	exon2	c.100delA	p.K34fs	CCAGATAAAAAAA	.	229	7	181	0	.	0	0	0	0	0
LIAS	11019	hgsc.bcm.edu;bcgsc.ca	37	4	39466916	39466916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIAS-90	NM_194451	exon6	c.562delG	p.G188fs	CCTGATGGGGGAG	.	131	55	115	0	.	0	0	0	0	0
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39868540	39868540	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001100399	exon23	c.T2583C	p.L861L	TAACCGAAGGGTT	.	89	32	103	0	.	55	39	16	0	0
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40339332	40339332	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHRNA9-96	NM_017581	exon3	c.A316C	p.R106R	TCCATCAGGATCC	.	156	62	154	1	.	0	0	0	0	0
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	4	49009291	49009291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CWH43-93	NM_025087	exon8	c.1134delA	p.T378fs	TCAAACAAAAAAC	.	90	32	99	2	.	0	0	0	0	0
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55153648	55153648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRA-9497	NM_006206	exon19	c.T2614G	p.Y872D	AACCTCTACACCA	.	185	85	143	0	.	0	0	0	0	0
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57357651	57357651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRP72-116	NM_006947	exon16	c.G1557T	p.E519D	TGTTGAGGCTCTT	.	159	60	126	0	.	75	35	40	0	0
IGFBP7	3490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57907052	57907052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGFBP7-522	NM_001553	exon2	c.G523A	p.A175T	CCTGGGCACCAGT	.	147	63	141	0	.	1724	1722	1	0	1
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68380317	68380317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPC1-205	NM_001812	exon8	c.G919T	p.E307X	CCGACTCATCAAT	.	70	25	71	0	.	7	5	2	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68530972	68530972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA6-90	NM_018227	exon10	c.G832A	p.E278K	CCAGTTCTGTGGT	.	173	66	163	0	.	25	11	14	0	0
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69343139	69343139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMPRSS11E-70	NM_014058	exon8	c.T760C	p.S254P	AAACCTTCGAAAA	.	204	96	186	0	.	0	0	0	0	0
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69682216	69682216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UGT2B10-65	.	.	.	.	TGCTGGCTGAGCT	.	409	181	305	2	.	0	0	0	0	0
ODAM	54959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71068483	71068483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ODAM-134	NM_017855	exon9	c.A659G	p.E220G	CAGGAGAAGAGAT	.	185	76	141	1	.	0	0	0	0	0
CABS1	85438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71201374	71201374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CABS1-93	NM_033122	exon1	c.G618T	p.Q206H	TGTCCAGGTCACT	.	186	89	156	1	.	0	0	0	0	0
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73148985	73148985	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS3-651	NM_014243	exon22	c.A3486G	p.S1162S	CATTTGTGAAGCT	.	136	51	108	0	.	0	0	0	0	0
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74303978	74303978	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AFP-91	NM_001134	exon3	c.G225A	p.E75E	AATTGAGAAACCC	.	74	25	63	0	.	0	0	0	0	0
MTHFD2L	441024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75041061	75041061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MTHFD2L-91	NM_001144978	exon3	c.C392G	p.T131S	ACGTAACTGATCA	.	160	72	114	1	.	3	0	3	0	0
FAM47E-STBD1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	77177441	77177441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001242939	exon2	c.G185A	p.C62Y	CGCCTTGCACTGG	.	90	33	87	0	.	1	0	1	0	0
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77692038	77692038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHROOM3-93	NM_020859	exon10	c.G5609A	p.S1870N	ATGCCAGTAATGA	.	276	112	195	2	.	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79258865	79258865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRAS1-68	NM_001166133	exon20	c.G2316C	p.L772F	GCCGTTGGAGTCT	.	334	136	230	0	.	0	0	0	0	0
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79832494	79832494	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP2K-383	NM_198892	exon16	c.A2793T	p.V931V	AGATGTATTTGGC	.	565	211	536	1	.	20	10	10	0	0
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC31A-268	NM_001077206	exon11	c.1384delA	p.I462fs	CATCAATTTTTTT	.	74	25	76	0	.	0	0	0	0	0
SEC31A	22872	bcgsc.ca	37	4	83795857	83795857	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC31A-268	NM_001077206	exon6	c.T546A	p.H182Q	TAAAATATGCTGA	.	40	10	52	0	.	42	12	30	0	0
HELQ	113510	bcgsc.ca	37	4	84362474	84362474	+	Missense_Mutation	SNP	C	C	T	rs142206532	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HELQ-155	NM_133636	exon7	c.G1646A	p.R549H	AGAAGACGTGAAA	.	201	79	175	4	C|0.994;T|0.006	9	3	6	0	0
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643506	87643506	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_006264	exon10	c.C1527T	p.I509I	CACAATCAAAGCG	.	494	214	368	0	.	5	1	4	0	0
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643549	87643549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_006264	exon10	c.A1570G	p.I524V	AGAGAAATTGCCC	.	446	172	339	0	.	3	2	1	0	0
DSPP	1834	broad.mit.edu;ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DSPP-90	NM_014208	exon5	c.C3627T	p.D1209D	CAGTGACAGCAGT	.	920	130	687	2	.	0	0	0	0	0
PKD2	5311	bcgsc.ca	37	4	88986559	88986559	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD2-91	NM_000297	exon11	c.2152delA	p.K718fs	AAACTGAAAAAAA	.	262	116	200	4	.	0	0	0	0	0
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89679992	89679992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM13A-70	NM_014883	exon14	c.C1639T	p.Q547X	CATCTTGATTTCT	.	146	58	93	0	.	4	4	0	0	0
GRID2	2895	ucsc.edu;bcgsc.ca	37	4	94436526	94436526	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRID2-159	NM_001510	exon13	c.G2157A	p.E719E	ATCGGAGAACAAT	.	192	73	177	3	.	0	0	0	0	0
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94547465	94547465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRID2-159	NM_001510	exon14	c.G2239A	p.E747K	GTATTGGAATATG	.	119	50	93	0	.	0	0	0	0	0
PDLIM5	10611	ucsc.edu;bcgsc.ca	37	4	95496845	95496845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDLIM5-117	NM_006457	exon5	c.G370A	p.A124T	AACATGGCCTACA	.	303	123	291	4	.	7	6	1	0	0
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100349715	100349715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADH7-227	NM_001166504	exon3	c.A253T	p.I85F	CCACAATCACTGG	.	132	51	96	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	104066472	104066472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPE-277	NM_001813	exon32	c.A4592G	p.K1531R	TCCTCTTTCTCAT	.	12	5	9	0	.	3	3	0	0	0
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106196337	106196337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TET2-4618	NM_001127208	exon11	c.T4670A	p.V1557D	AGTCTGTCAACTC	.	178	78	124	0	.	2	1	1	0	0
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110460806	110460806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC24B-137	NM_006323	exon24	c.A3782G	p.H1261R	TGCTTCATGTTCA	.	42	20	40	0	.	65	36	29	0	0
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111539802	111539802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITX2-650	NM_000325	exon3	c.C454T	p.R152C	GGTTGCGCTCCCT	.	138	64	115	0	.	0	0	0	0	0
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113484389	113484389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4orf21-90	NM_018392	exon17	c.G4480C	p.D1494H	AAGTATCCAGCTC	.	153	67	122	0	.	1	1	0	0	0
NDST3	9348	bcgsc.ca	37	4	118975230	118975230	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST3-153	NM_004784	exon2	c.C165A	p.L55L	CGACCTCCAACAC	.	237	11	220	2	.	0	0	0	0	0
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121616316	121616316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM5-91	NM_018699	exon16	c.G1843A	p.D615N	GGTAGTCATTCCT	.	57	39	94	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126373258	126373258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT4-108	NM_024582	exon9	c.A11087G	p.N3696S	CGAGCAACATCCG	.	99	81	160	0	.	0	0	0	0	0
PCDH10	57575	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071935	134071935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDH10-92	NM_032961	exon1	c.G640A	p.E214K	GTAGGAGAAGGAG	.	36	28	58	1	.	0	0	0	0	0
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140811799	140811799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAML3-455	NM_018717	exon2	c.A791T	p.D264V	AAGCTATCCTCCA	.	70	43	136	0	.	3	1	2	0	0
HHIP	64399	broad.mit.edu	37	4	145629444	145629444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HHIP-283	NM_022475	exon7	c.G1282A	p.G428R	GCTCATGGGCTCC	.	43	4	57	0	.	0	0	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149041326	149041326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C2-154	NM_000901	exon7	c.T2624C	p.L875S	AGCAGCAAAACTT	.	56	41	115	0	.	0	0	0	0	0
DCLK2	166614	hgsc.bcm.edu;bcgsc.ca	37	4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCLK2-300	NM_001040260	exon1	c.203_205del	p.68_69del	GCTCGGAGAAGAA	.	279	209	335	1	.	0	0	0	0	0
PET112	5188	broad.mit.edu	37	4	152638110	152638110	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PET112-90	NM_004564	exon4	c.G558A	p.K186K	GATCTGCTTGATC	.	93	4	126	0	.	25	25	0	0	0
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	154624389	154624392	+	Frame_Shift_Del	DEL	TTAC	TTAC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTAC	TTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLR2-523	NM_003264	exon3	c.330_333del	p.110_111del	CTATAATTACTTA	.	50	33	73	0	.	0	0	0	0	0
GUCY1A3	2982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156638325	156638325	+	Silent	SNP	C	C	T	rs112384014		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GUCY1A3-93	NM_001130687	exon8	c.C1587T	p.G529G	CATTGGCGATGCC	.	139	102	227	2	C|0.500;T|0.500	6	5	1	0	0
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092094	159092094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM198B-90	NM_016613	exon2	c.T434C	p.L145S	CCGACCAAAGCCT	.	68	55	117	0	.	9	4	5	0	0
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	164050138	164050138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAF1-70	NM_138386	exon8	c.T1396C	p.Y466H	GGGAGTATGGTAA	.	10	8	22	0	.	0	0	0	0	0
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271440	164271440	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPY5R-523	NM_006174	exon4	c.C15T	p.L5L	AGAGCTCGACGAG	.	18	13	48	0	.	0	0	0	0	0
AGA	175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178358622	178358622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGA-90	NM_000027	exon5	c.A559G	p.I187V	TTAAGATACCAGG	.	108	88	183	0	.	20	1	19	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187532668	187532668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT1-34	NM_005245	exon14	c.A9725G	p.D3242G	AGAATGTCCTCAG	.	215	170	348	1	.	10	2	8	0	0
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	236583	236583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHA-226	NM_004168	exon10	c.G1301A	p.G434D	TGCCCGGCCTGTA	.	467	194	325	0	.	283	149	134	0	0
SLC12A7	10723	broad.mit.edu;bcgsc.ca	37	5	1064007	1064007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A7-138	NM_006598	exon20	c.G2691T	p.M897I	CAAGAACATCTGC	.	230	104	133	1	.	22	10	12	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	11	4	1	0	T|0.735;G|0.265	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13701414	13701414	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon77	c.A13470G	p.G4490G	TAAAAATCCCTGG	.	45	20	56	0	.	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13809182	13809182	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon46	c.C7723T	p.L2575L	GAATTAGAAAGTC	.	204	92	170	0	.	0	0	0	0	0
DNAH5	1767	bcgsc.ca	37	5	13830255	13830255	+	Silent	SNP	C	C	T	rs141459197		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon37	c.G6129A	p.S2043S	TGCAACCGAGAGA	.	266	125	190	5	C|0.999;T|0.001	0	0	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16711035	16711035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO10-3	NM_012334	exon21	c.G2151A	p.W717X	CAGCTGCCACTCG	.	136	51	89	0	.	6	6	0	0	0
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32355934	32355934	+	Missense_Mutation	SNP	C	C	T	rs55686708	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFR-90	NM_016107	exon20	c.G3157A	p.D1053N	CACTATCTCTTCT	.	102	34	81	0	.	233	122	111	0	0
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33881505	33881505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS12-232	NM_030955	exon2	c.G208A	p.G70S	GCAAGCCATATGA	.	75	33	71	1	.	3	3	0	0	0
BRIX1	55299	ucsc.edu;bcgsc.ca	37	5	34915889	34915889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BRIX1-90	NM_018321	exon1	c.G46A	p.A16T	GTTCAGGCGAAGA	.	478	179	418	2	.	42	19	23	0	0
SLC1A3	6507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36677261	36677261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC1A3-90	NM_004172	exon6	c.A835G	p.M279V	GCCATCATGAGAC	.	185	89	140	1	.	11	5	6	0	0
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36953863	36953863	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NIPBL-293	NM_133433	exon2	c.64+1G>A	.	CAGACCGTAAGTT	.	66	27	69	0	.	0	0	0	0	0
MROH2B	133558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41000914	41000914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173489	exon38	c.A4216G	p.T1406A	TGGCAGTCAATCT	.	124	48	139	1	.	1	0	1	0	0
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41739509	41739509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OXCT1-133	NM_000436	exon16	c.A1504G	p.T502A	ACCCAGTACTCTT	.	121	48	105	0	.	4	0	4	0	0
PAIP1	10605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43539100	43539100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAIP1-69	NM_006451	exon5	c.A772G	p.K258E	CCCCTTTTGCAGC	.	56	27	44	0	.	167	93	74	0	0
PAIP1	10605	broad.mit.edu;mdanderson.org	37	5	43556100	43556100	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAIP1-69	NM_006451	exon2	c.G267A	p.E89E	CGTTTGCTCTGCA	.	48	15	29	0	.	0	0	0	0	0
PELO	53918	hgsc.bcm.edu;broad.mit.edu	37	5	52096425	52096426	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PELO-44	NM_015946	exon2	c.197_198del	p.66_66del	CCCTCACTCTCTG	.	260	14	234	0	.	0	0	0	0	0
SETD9	133383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56207218	56207218	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_153706	exon2	c.A321G	p.Q107Q	ACAGCAAAGTACC	.	74	31	66	0	.	4	0	4	0	0
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56234785	56234785	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIER3-90	NM_152622	exon4	c.A240T	p.P80P	AACTGCTGGAATT	.	114	38	83	0	.	9	5	4	0	0
SREK1IP1	285672	broad.mit.edu	37	5	64023941	64023941	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SREK1IP1-23	NM_173829	exon4	c.271delA	p.R91fs	TTTTCCTTTTTTT	.	52	22	66	0	.	0	0	0	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65058794	65058794	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLN-90	NM_020726	exon3	c.G309A	p.R103R	GGAAAGGACCATG	.	115	50	94	0	.	0	0	0	0	0
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68412226	68412226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC30A5-226	NM_022902	exon10	c.A1078G	p.N360D	GCTGCCAATATCT	.	66	28	47	0	.	0	0	0	0	0
SMN1	6606	ucsc.edu;bcgsc.ca	37	5	70247769	70247769	+	Missense_Mutation	SNP	G	G	A	rs76163360	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMN1-22	NM_000344	exon8	c.G836A	p.G279D	TACAGGGTTTCAG	.	216	86	205	2	.	0	0	0	0	0
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	5	74807619	74807621	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL4A3BP-226	NM_001130105	exon1	c.49_51del	p.17_17del	AAAAGCAGGAGGA	.	130	53	120	1	.	0	0	0	0	0
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74869656	74869656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLK-229	NM_016218	exon5	c.C502T	p.P168S	ATAGTGCCCCCCA	.	160	78	158	0	.	20	15	5	0	0
IQGAP2	10788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75896750	75896750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IQGAP2-96	NM_006633	exon11	c.A1185C	p.R395S	ACTCAGAAGCCCC	.	177	87	127	2	.	1	1	0	0	0
MSH3	4437	broad.mit.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSH3-661	NM_002439	exon1	c.196_204del	p.66_68del	CCAGCGCCCCCAG	.	16	7	6	0	.	0	0	0	0	0
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816109	82816109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VCAN-238	NM_004385	exon7	c.A1984G	p.K662E	GGTGATAAAATAT	.	66	26	66	1	.	0	0	0	0	0
CETN3	1070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89703515	89703515	+	Splice_Site	SNP	C	C	T	rs143515805	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CETN3-90	NM_004365	exon3	c.153+1G>A	.	CCATTACCTTTAA	.	91	36	89	0	C|1.000;G|0.000	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89990218	89990218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR98-103	NM_032119	exon33	c.A7645G	p.N2549D	CTCATGAACATTT	.	146	68	151	0	.	0	0	0	0	0
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	92923842	92923842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR2F1-227	NM_005654	exon2	c.T683C	p.F228S	TGCTCTTCAGCGC	.	294	122	153	0	.	7	4	3	0	0
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93807267	93807267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0825-91	NM_001145678	exon9	c.C1625T	p.A542V	AGGGGTGCTTTGG	.	113	50	93	0	.	0	0	0	0	0
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96117463	96117463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERAP1-70	NM_001198541	exon16	c.C2381G	p.S794C	GTACTGGACAAAG	.	60	21	42	0	.	7	4	3	0	0
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315242	96315242	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C420T	p.G140G	AGAAGGCTGCCAT	.	158	64	120	0	.	2	1	1	0	0
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315342	96315342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C520T	p.P174S	GTTGTGCCACTAC	.	101	47	95	0	.	8	4	4	0	0
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101631819	101631819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLCO4C1-93	NM_180991	exon1	c.C148T	p.Q50X	GCTTCTGAAGCTC	.	47	20	34	1	.	0	0	0	0	0
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112178919	112178919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APC-12026	NM_001127510	exon17	c.G7628A	p.R2543K	TCAATAGGTCAGG	.	146	59	111	0	.	31	20	11	0	0
AQPEP	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115320392	115320392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173800	exon3	c.G964A	p.E322K	AGAACAGAAAGGG	.	193	88	173	2	.	0	0	0	0	0
SEMA6A	57556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115782363	115782363	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6A-92	NM_020796	exon19	c.A3039G	p.K1013K	GGATGGTTTGGGG	.	123	61	113	1	.	40	17	23	0	0
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115815886	115815886	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6A-92	NM_020796	exon12	c.G1182A	p.T394T	CGGGTGCGTCTTG	.	201	86	152	0	.	35	22	13	0	0
FAM170A	340069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118970154	118970154	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM170A-91	NM_182761	exon3	c.C711T	p.F237F	GGTGTTCACCACC	.	162	67	142	1	.	0	0	0	0	0
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123976977	123976977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF608-229	NM_020747	exon7	c.C4418T	p.P1473L	ATTAGCGGGTAAC	.	136	64	135	0	.	10	8	2	0	0
SLC12A2	6558	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127493843	127493843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A2-94	NM_001046	exon16	c.G2462A	p.G821D	TCTGTGGCCATGT	.	117	57	82	1	.	0	0	0	0	0
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130766961	130766961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAPGEF6-661	NM_001164387	exon28	c.T4095A	p.H1365Q	AATGATATGCTCT	.	67	33	70	0	.	8	5	3	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	13	13	0	0	G|0.980;C|0.020	0	0	0	0	0
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134296370	134296370	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBD2-90	NM_032151	exon4	c.G392A	p.X131X	CTGTGTGATTTCT	.	122	54	101	0	.	11	5	6	0	0
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135396593	135396593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGFBI-26	NM_000358	exon14	c.T1874C	p.V625A	GCGTGGTCCATGT	.	452	177	402	1	.	87	83	4	0	0
TRPC7	57113	ucsc.edu;bcgsc.ca	37	5	135587359	135587359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020389	exon6	c.G1557A	p.P519P	CACTTCCGGCGGA	.	374	172	277	2	.	0	0	0	0	0
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137722268	137722268	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM3B-542	NM_016604	exon7	c.G1338A	p.V446V	GACTGTGCCAGAA	.	307	137	258	0	.	21	11	10	0	0
PROB1	389333	hgsc.bcm.edu;mdanderson.org	37	5	138728085	138728085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001161546	exon1	c.G2686A	p.A896T	GCGGCGCCTCCAC	.	55	21	11	0	.	1	1	0	0	0
PCDHA7	56141	bcgsc.ca	37	5	140215497	140215497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHA7-94	NM_031852	exon1	c.T1529C	p.V510A	TGTCAGTGCACGC	.	405	181	97	2	.	3	1	2	0	0
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140475545	140475545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB2-96	NM_018936	exon1	c.C1171T	p.L391F	GATGATCTTCCTT	.	292	138	227	0	.	1	1	0	0	0
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140516394	140516394	+	Nonsense_Mutation	SNP	C	C	T	rs201677139	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB5-95	NM_015669	exon1	c.C1378T	p.R460X	TTCGTCCGAGAGA	.	322	133	231	1	C|0.998;G|0.001;T|0.001	98	67	31	0	0
PCDHB5	26167	hgsc.bcm.edu	37	5	140516906	140516906	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB5-95	NM_015669	exon1	c.C1890T	p.S630S	GCTGAGCGAGCGC	.	105	45	7	0	.	51	29	22	0	0
PCDHB6	56130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140531452	140531452	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB6-91	NM_018939	exon1	c.G1614A	p.A538A	CCCGGCGTTGAGC	.	514	223	137	1	.	0	0	0	0	0
PCDHB7	56129	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140554289	140554289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB7-95	NM_018940	exon1	c.C1873T	p.R625C	GAGGTGCGTACCG	.	289	60	44	1	.	1	1	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595600	140595600	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB13-93	NM_018933	exon1	c.G1905C	p.A635A	CGACGCGGCCAAG	.	130	51	5	0	.	34	26	8	0	0
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724077	140724077	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHGA3-68	NM_032011	exon1	c.C477T	p.D159D	TTTTGACCCAGAT	.	92	38	63	1	.	3	0	3	0	0
PCDHGB6	56100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140789294	140789294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032100	exon1	c.G1525A	p.A509T	GTGAGCGCGCAGA	.	192	82	96	1	.	1	1	0	0	0
RELL2	285613	hgsc.bcm.edu;bcgsc.ca	37	5	141017910	141017912	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RELL2-90	NM_173828	exon1	c.118_120del	p.40_40del	GTGCTCAAGAAGA	.	106	35	95	1	.	0	0	0	0	0
NR3C1	2908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142662181	142662181	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C1-92	NM_001024094	exon8	c.C2136T	p.N712N	CTGCCAGTTCTGG	.	52	17	56	0	.	29	12	17	0	0
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145246099	145246099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRXCR2-22	NM_001080516	exon2	c.G529A	p.A177T	TTTCTGCCTCCAC	.	105	20	58	0	.	0	0	0	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145634509	145634509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon10	c.C1448A	p.T483K	CAGATACATATGA	.	69	21	68	0	.	0	0	0	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145647328	145647328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon15	c.A2448C	p.K816N	AAAAAAACAGGTA	.	272	115	241	1	.	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145834680	145834680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_006706	exon2	c.C121T	p.R41X	GTGATGCGAGGCC	.	140	66	115	0	.	7	5	2	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838674	145838674	+	Silent	SNP	A	A	G	rs111879925	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_006706	exon4	c.A666G	p.Q222Q	GGCCCAAGCCCAA	.	157	15	48	0	A|0.500;G|0.500	14	14	0	0	0
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145849290	145849290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_006706	exon7	c.A1382G	p.Q461R	AACCCCAAGAACT	.	37	11	47	0	.	14	5	9	0	0
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147805102	147805102	+	Missense_Mutation	SNP	C	C	T	rs144744644		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXO38-231	NM_001271723	exon14	c.C1756T	p.R586C	CTTCAGCGTGTAG	.	160	75	135	0	C|1.000;T|0.000	32	20	12	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149213123	149213123	+	Missense_Mutation	SNP	C	C	T	rs201665839		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPARGC1B-186	NM_133263	exon5	c.C1487T	p.P496L	ATGAGCCGCTGGT	.	225	6	168	0	C|0.999;T|0.000	5	5	0	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149510124	149510124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRB-1499	NM_002609	exon9	c.T1345C	p.S449P	AGGCAGACCAGAT	.	64	27	49	0	.	75	74	0	1	0
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	153760166	153760166	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT10-92	NM_198321	exon6	c.913delA	p.K305fs	CTGCAGAAAGCTG	.	129	61	88	0	.	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173383	154173383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.661delC	p.P221fs	TACGTGCCCGTGG	.	115	45	85	0	.	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu	37	5	154173385	154173390	+	In_Frame_Del	DEL	CGTGGC	CGTGGC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CGTGGC	CGTGGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.663_668del	p.221_223del	CGTGCCCGTGGCC	.	117	0	86	0	.	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173390	154173390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.668delC	p.A223fs	CCGTGGCCCCCCC	.	118	46	81	0	.	0	0	0	0	0
CNOT8	9337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154254927	154254927	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNOT8-90	NM_004779	exon7	c.G807A	p.K269K	CCAGAAGCAGAAT	.	100	40	80	0	.	119	61	58	0	0
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158140042	158140042	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EBF1-92	NM_024007	exon13	c.C1305T	p.G435G	ATTCACGCCCATC	.	209	80	195	0	.	13	9	4	0	0
TTC1	7265	hgsc.bcm.edu;bcgsc.ca	37	5	159437837	159437837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC1-91	NM_003314	exon2	c.302delA	p.E101fs	AACTGGAAAAAAA	.	205	77	151	1	.	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	166711961	166711961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001122679	exon1	c.A119G	p.Y40C	AATCCTACAGCTC	.	265	106	212	0	.	3	1	2	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167617506	167617506	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001122679	exon14	c.A2707T	p.K903X	GCAGGCAAGGATA	.	262	108	220	0	.	0	0	0	0	0
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	168201335	168201335	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLIT3-95	NM_001271946	exon13	c.G1200A	p.Q400Q	CAGGTCCTGAAAC	.	247	95	156	2	.	90	44	46	0	0
TLX3	30012	broad.mit.edu;bcgsc.ca	37	5	170737206	170737206	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLX3-658	NM_021025	exon2	c.C474T	p.Y158Y	CCCCTACCAGAAC	.	231	97	121	1	.	15	3	11	1	0
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171661284	171661284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBTD2-90	NM_152277	exon2	c.T149C	p.L50P	CTGCGTAGTTGTC	.	131	59	114	0	.	12	7	5	0	0
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174152037	174152037	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSX2-90	NM_002449	exon1	c.G375A	p.P125P	GCCGCCGCCAAGT	.	297	144	186	0	.	0	0	0	0	0
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	175824632	175824632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLTB-90	NM_001834	exon4	c.T440C	p.V147A	TTCTCTACTTGTT	.	83	37	61	0	.	992	445	546	1	0
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177649506	177649506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGXT2L2-91	NM_153373	exon8	c.C777A	p.F259L	GGCCCAGAAGTGC	.	434	189	368	1	.	8	7	1	0	0
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178392351	178392351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF454-93	NM_001178089	exon5	c.A946G	p.T316A	CACCTTACCAAAC	.	67	24	52	0	.	0	0	0	0	0
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178507040	178507040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF354C-91	NM_014594	exon5	c.G1607A	p.S536N	TCTGCAGCTCCTC	.	113	50	104	0	.	3	2	1	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	rs186444058		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTNL9-91	NM_152547	exon11	c.C1150T	p.H384Y	GGCCGCCACTACT	.	18	12	0	0	C|0.983;T|0.017	2	1	1	0	0
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180582175	180582175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2V2-69	NM_206880	exon1	c.A233C	p.N78T	GTACCAATGTGCC	.	190	69	143	0	.	0	0	0	0	0
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu	37	5	180582745	180582745	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2V2-69	NM_206880	exon1	c.803delC	p.A268fs	ACCGGGCCCCCAG	.	344	23	277	0	.	0	0	0	0	0
SERPINB1	1992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2836398	2836398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINB1-292	NM_030666	exon5	c.T511C	p.W171R	CCTTCCAGTTTCC	.	70	28	66	0	.	25	8	17	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086072	5086072	+	Missense_Mutation	SNP	A	A	C	rs34969826		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R3G-136	NM_001145115	exon1	c.A353C	p.Q118P	ACGCACAGCTCGG	.	12	5	3	0	A|0.933;C|0.067	0	0	0	0	0
FARS2	10667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	5369294	5369294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARS2-90	NM_006567	exon2	c.T491C	p.L164P	ACTTGCTGCACGC	.	136	60	96	1	.	23	14	9	0	0
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7585739	7585739	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DSP-518	NM_004415	exon24	c.A8244G	p.E2748E	CACCGAAGAAGCC	.	367	144	271	2	.	22	5	17	0	0
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7880448	7880448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP6-578	NM_001718	exon7	c.T1414C	p.Y472H	CCCGAGTATGTCC	.	289	111	217	0	.	5	5	0	0	0
BLOC1S5	63915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	8041439	8041439	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_201280	exon3	c.A258G	p.T86T	TTCATTTGTTTCA	.	76	41	47	1	.	20	10	10	0	0
GCNT2	2651	broad.mit.edu	37	6	10556944	10556944	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GCNT2-92	NM_001491	exon1	c.A288G	p.A96A	CTTGGCATATATA	.	111	6	87	0	.	0	0	0	0	0
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	18215282	18215282	+	Silent	SNP	C	C	T	rs144521010	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM1B-91	NM_153042	exon16	c.C1458T	p.V486V	GGCTGTCGCATCC	.	99	30	49	0	C|0.998;T|0.002	57	28	29	0	0
ZSCAN26	7741	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28244219	28244219	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152736	exon4	c.T381G	p.S127S	CGAGTCTGATGTG	.	116	44	78	1	.	8	2	6	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039373	30039373	+	Missense_Mutation	SNP	G	G	C	rs61754472		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF39-226	NM_025236	exon4	c.C778G	p.P260A	CAGGGGGCGCGGG	.	16	14	2	0	G|0.966;C|0.034	4	4	0	0	0
C6orf15	29113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31079664	31079664	+	Missense_Mutation	SNP	C	C	T	rs147112509	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf15-90	NM_014070	exon2	c.G472A	p.D158N	TGGCATCGGGAGA	.	125	57	83	1	C|1.000;G|0.000	0	0	0	0	0
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31112778	31112778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCHCR1-91	NM_001105564	exon14	c.C1949T	p.S650F	GCCAGGGACTCCT	.	64	23	56	0	.	27	15	12	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31747403	31747403	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VARS-93	NM_006295	exon27	c.3270delC	p.P1090fs	CGGGTAGGGGGTA	.	127	58	77	0	.	0	0	0	0	0
C4A	720	bcgsc.ca;mdanderson.org	37	6	31994861	31994861	+	Missense_Mutation	SNP	C	C	T	rs201414896		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4A-44	NM_007293	exon20	c.C2554T	p.R852W	GAGCTGCGGCCTG	.	389	212	281	0	C|0.999;T|0.001	107	27	80	0	0
C4A	720	bcgsc.ca	37	6	31997544	31997544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4A-44	NM_007293	exon29	c.G3878A	p.G1293D	GTCAGGGCAGCTT	.	456	103	406	6	.	206	51	155	0	0
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32012914	32012914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNXB-90	NM_019105	exon32	c.C10790T	p.A3597V	AGCAAGGCCTGGG	.	452	95	354	2	.	78	59	19	0	0
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32782355	32782355	+	Missense_Mutation	SNP	G	G	A	rs201263357		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HLA-DOB-91	NM_002120	exon3	c.C385T	p.P129S	TCTCTGGGTACAC	.	163	58	137	0	.	3	3	0	0	0
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820954	32820954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAP1-91	NM_000593	exon1	c.T640C	p.W214R	TGTGCCACAGGGC	.	145	59	86	0	.	37	26	11	0	0
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33283545	33283545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB22-69	NM_001145338	exon2	c.C1149A	p.D383E	GCCAAAGTCATTG	.	87	42	66	1	.	29	20	9	0	0
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33373046	33373046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC1-90	NM_002263	exon7	c.G1174A	p.A392T	GAGATTGCCATGC	.	84	34	91	0	.	32	25	7	0	0
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385290	33385290	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014433	exon2	c.C282T	p.C94C	GTTGGGGCAAGTA	.	162	82	146	0	.	790	507	281	0	2
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385455	33385455	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014433	exon2	c.T117C	p.S39S	AACAAAAGACAGG	.	74	29	55	0	.	484	199	285	0	0
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657170	33657170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITPR3-1085	NM_002224	exon50	c.A6850T	p.I2284F	CTCAACATCCTGG	.	82	35	48	0	.	19	4	15	0	0
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKS1A-94	NM_015245	exon7	c.953delC	p.T318fs	ATAAAACCCCCCC	.	26	11	44	0	.	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38840860	38840860	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH8-615	NM_001206927	exon51	c.G7416A	p.T2472T	TGCCACGGTTTCT	.	138	55	87	0	.	1	1	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	22	22	0	0	T|0.441;C|0.559	0	0	0	0	0
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41060791	41060791	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFYA-226	NM_002505	exon8	c.A855G	p.L285L	TAAACTAGAGGCA	.	117	46	132	0	.	22	7	15	0	0
TRERF1	55809	bcgsc.ca;mdanderson.org	37	6	42236625	42236625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRERF1-230	NM_033502	exon5	c.A704G	p.D235G	TGGTAGTCATAAT	.	105	42	74	2	.	3	1	2	0	0
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42610157	42610157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBR2-94	NM_015255	exon18	c.T2035A	p.Y679N	TAGATTTATTACT	.	32	18	23	0	.	0	0	0	0	0
GLTSCR1L	23506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42797332	42797332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015349	exon5	c.A1261G	p.N421D	ACTATAAATGGGC	.	112	44	110	0	.	18	9	9	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	13	6	0	0	C|0.673;A|0.327	21	0	21	0	0
SRF	6722	hgsc.bcm.edu	37	6	43139653	43139653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRF-1084	NM_003131	exon1	c.G259A	p.E87K	TCGGGCGAGGAGG	.	46	22	1	0	.	0	0	0	0	0
GTPBP2	54676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43592287	43592287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTPBP2-92	NM_019096	exon7	c.G1060A	p.D354N	CGGCATCATCCTC	.	88	44	74	0	.	53	23	30	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223336	44223336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC35B2-91	NM_178148	exon4	c.C406T	p.R136C	AGCTGCGGGTCAT	.	103	38	60	0	.	102	60	42	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46658119	46658119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TDRD6-138	NM_001168359	exon1	c.A2254T	p.M752L	CCTCTTATGCAGA	.	72	25	52	0	.	0	0	0	0	0
C6orf141	135398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49518618	49518618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145652	exon1	c.G113A	p.R38H	TAGGGCGCGGGGC	.	51	26	31	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51695744	51695744	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKHD1-603	NM_170724	exon52	c.T8217G	p.P2739P	TGTTTCAGGGAGG	.	100	39	89	0	.	0	0	0	0	0
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53140004	53140004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ELOVL5-90	NM_001242828	exon6	c.C461A	p.T154N	AAGAAAGTGTCCA	.	216	74	185	1	.	301	179	122	0	0
MLIP	90523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53883833	53883833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLIP-99	NM_138569	exon1	c.C7T	p.L3F	ATGGAACTTGAAA	.	145	58	145	0	.	0	0	0	0	0
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55304258	55304258	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGCLL1-94	NM_019036	exon9	c.A985T	p.M329L	TAAGCATATATAT	.	80	35	90	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56371582	56371582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_015548	exon57	c.A11376G	p.I3792M	TTCCCTTATGGTC	.	90	39	62	0	.	0	0	0	0	0
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71138076	71138076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM135A-90	NM_001162529	exon2	c.T31A	p.S11T	GAATTCTCTGTGG	.	44	20	45	0	.	2	1	1	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72960679	72960679	+	Missense_Mutation	SNP	A	A	G	rs201901272	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon14	c.A2428G	p.N810D	AAATGGAATCAAA	.	139	63	111	0	A|0.999;T|0.000	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72968725	72968725	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon18	c.T2964A	p.R988R	GTCACGTTCTCCA	.	108	54	74	0	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73000437	73000437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon25	c.C3610T	p.Q1204X	ACTGATCAGCCAG	.	122	47	115	0	.	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	7	7	0	0	C|0.505;G|0.495	0	0	0	0	0
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76380283	76380283	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SENP6-660	NM_015571	exon11	c.T1239C	p.I413I	TTCTATTATCAAC	.	46	19	30	0	.	25	15	10	0	0
HMGN3	9324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79913320	79913320	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGN3-226	NM_001201362	exon4	c.A124T	p.K42X	TTGGTTTGGGTTC	.	85	37	62	0	.	260	205	55	0	0
DOPEY1	23033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83849997	83849997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOPEY1-155	NM_015018	exon23	c.A5290G	p.I1764V	CTCTCAATCCTTC	.	103	40	91	1	.	1	1	0	0	0
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967774	87967774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF292-72	NM_015021	exon8	c.C4427T	p.T1476I	GTGTGACTAACTT	.	74	31	101	0	.	12	7	5	0	0
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90377855	90377855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDN1-100	NM_014611	exon84	c.A13972G	p.K4658E	ATTCTTTGGGCAA	.	44	19	61	0	.	9	1	8	0	0
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107811894	107811894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOBP-91	NM_018013	exon1	c.G74A	p.R25K	TGAAAAGGGAGAT	.	131	58	99	0	.	2	1	1	0	0
MICAL1	64780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109773753	109773753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MICAL1-154	NM_001159291	exon5	c.G637A	p.V213I	TAAGGACGTCAAA	.	211	76	153	1	.	4	2	2	0	0
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109798048	109798048	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB24-92	NM_014797	exon3	c.C1038T	p.G346G	CCGCTCGCCTGTG	.	146	53	93	0	.	3	3	0	0	0
HDAC2	3066	hgsc.bcm.edu	37	6	114292035	114292035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC2-660	NM_001527	exon1	c.G38A	p.C13Y	TAGTAGCAGACTT	.	29	13	1	0	.	61	24	37	0	0
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114378976	114378976	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HS3ST5-92	NM_153612	exon2	c.A486G	p.T162T	CTCCTCTGTGATA	.	103	54	92	0	.	0	0	0	0	0
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117665330	117665330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROS1-1353	NM_002944	exon27	c.A4417G	p.T1473A	GGTTTGTCTTGGC	.	199	84	135	0	.	0	0	0	0	0
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	121427246	121427246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf170-92	NM_152730	exon30	c.T3388C	p.Y1130H	CAATATAATGGGT	.	180	69	190	2	.	3	2	1	0	0
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080476	126080476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HEY2-658	NM_012259	exon5	c.A542G	p.H181R	CGCTCCACCCGCA	.	69	31	56	0	.	2	2	0	0	0
CENPW	387103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126667370	126667370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPW-90	NM_001012507	exon2	c.T146G	p.L49R	GTTTACTGTTTGT	.	83	39	71	0	.	72	39	33	0	0
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129204502	129204502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA2-162	NM_000426	exon1	c.G112C	p.G38R	CAAAGAGGTACAG	.	134	58	68	0	.	0	0	0	0	0
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129950582	129950582	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGAP18-230	NM_033515	exon5	c.A702T	p.V234V	AAATGATACCTCC	.	59	30	43	0	.	53	29	24	0	0
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132645213	132645213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MOXD1-515	NM_015529	exon7	c.A970T	p.R324W	ATAACCTCAGTCC	.	131	42	110	0	.	2	1	1	0	0
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137329836	137329836	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL20RA-94	NM_014432	exon5	c.G624A	p.L208L	CGGCTCCAGCCAG	.	108	36	79	0	.	9	5	4	0	0
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139237076	139237076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPS1-522	NM_031922	exon14	c.C1636G	p.P546A	GAGGTGGTGGTGC	.	173	90	87	0	.	64	35	29	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139488123	139488123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECA-90	NM_016217	exon2	c.G974A	p.S325N	ATTACAGCCCTGC	.	33	14	29	0	.	5	4	1	0	0
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143074762	143074762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIVEP2-95	NM_006734	exon10	c.C6823A	p.P2275T	CATAGGGGTCCTT	.	81	40	83	0	.	12	9	3	0	0
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	145160331	145160331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UTRN-95	NM_007124	exon71	c.A10088G	p.N3363S	GAATCAATGGTGT	.	31	10	28	0	.	26	13	13	0	0
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146214396	146214396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon28	c.A4841G	p.H1614R	AGCTCATGGGCAG	.	155	72	95	0	.	8	7	1	0	0
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146248371	146248371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon15	c.G3182A	p.R1061H	GAGGAGCGCAACA	.	47	7	53	0	.	3	3	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	11	7	0	0	G|0.492;C|0.508	3	2	1	0	0
RAET1L	154064	broad.mit.edu;bcgsc.ca	37	6	150343331	150343331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAET1L-90	NM_130900	exon2	c.C134A	p.P45H	GGTCCAGGTCTGA	.	583	162	521	1	.	162	162	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151672050	151672050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.G2524T	p.D842Y	GACTCTGATGTCC	.	317	131	243	1	.	4	4	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151673402	151673402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.A3876G	p.I1292M	AGGCATAACAGTC	.	239	107	137	0	.	3	3	0	0	0
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732089	154732089	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNKSR3-26	NM_173515	exon11	c.A1258T	p.R420X	TCTCTCTCATTTT	.	113	40	110	0	.	4	4	0	0	0
CNKSR3	154043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732101	154732101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNKSR3-26	NM_173515	exon11	c.C1246T	p.P416S	TTGTGGGCAGAAT	.	126	48	109	0	.	1	1	0	0	0
SYTL3	94120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159166688	159166688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYTL3-90	NM_001242384	exon13	c.T1032A	p.N344K	GTGCAATCCGTAA	.	41	15	44	0	.	0	0	0	0	0
SLC22A3	6581	broad.mit.edu;bcgsc.ca	37	6	160819024	160819024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A3-517	NM_021977	exon2	c.G443C	p.C148S	TTGTCTGTGTCAA	.	106	5	92	0	.	0	0	0	0	0
LPA	4018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161006174	161006174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPA-74	NM_005577	exon27	c.G4193A	p.G1398D	AGTGTGCCTCGAT	.	311	141	225	2	.	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161510389	161510389	+	Silent	SNP	G	G	A	rs186715923		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP3K4-548	NM_006724	exon11	c.G2859A	p.A953A	GTCTGCGCATCTC	.	89	29	63	0	G|0.999;A|0.000	6	6	0	0	0
QKI	9444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	163984721	163984721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	QKI-290	NM_206853	exon6	c.G904C	p.E302Q	ATCCTTGAGTATC	.	82	39	95	0	.	79	45	34	0	0
C6orf118	168090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	165703533	165703533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf118-90	NM_144980	exon7	c.G1144A	p.D382N	TTTCATCAATTAT	.	32	4	28	0	.	0	0	0	0	0
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167417212	167417212	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR1OP-683	NM_007045	exon4	c.T213C	p.G71G	TATAGGTCGTTTA	.	53	23	47	0	.	0	0	0	0	0
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549924	167549924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.T206A	p.I69N	TGGTGATCACCTT	.	199	76	160	0	.	1	1	0	0	0
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550007	167550007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.C289G	p.L97V	TTTGTTCTTACTC	.	141	56	131	0	.	0	0	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	169622343	169622343	+	Silent	SNP	C	C	T	rs149118318		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon20	c.G3222A	p.T1074T	CTCGCCCGTCCCC	.	107	45	77	0	C|1.000;T|0.000	2	2	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169648601	169648601	+	Missense_Mutation	SNP	C	C	T	rs144458205	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon4	c.G520A	p.A174T	CCAGAGCGAAGCT	.	182	65	145	0	C|1.000;A|0.000	0	0	0	0	0
PSMB1	5689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170846402	170846402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB1-91	NM_002793	exon5	c.C460T	p.P154S	CTACTGGATCAAA	.	111	46	86	1	.	359	213	145	0	1
PSMB1	5689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170862286	170862286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB1-91	NM_002793	exon1	c.G45T	p.L15F	CATCCCCAAGTCT	.	59	25	63	0	.	1	1	0	0	0
GPR146	115330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	1097616	1097616	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR146-91	NM_138445	exon1	c.G465A	p.A155A	TGGCGCGCTGCTG	.	119	57	59	0	.	2	2	0	0	0
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1784587	1784587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001128636	exon2	c.C355T	p.R119W	TACAACCGGCTGC	.	146	59	125	0	.	0	0	0	0	0
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285348	4285348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDK1-138	NM_152744	exon44	c.G6292A	p.D2098N	TACTCAGACGAGG	.	155	54	102	0	.	2	2	0	0	0
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5330852	5330852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC29A4-515	NM_153247	exon4	c.C399A	p.H133Q	CCTGCACACCAGG	.	96	44	83	0	.	2	0	2	0	0
CCZ1B	221960	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6854405	6854405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198097	exon8	c.T770C	p.I257T	GGTTCGATGTGCC	.	203	85	202	3	.	1	0	1	0	0
GLCCI1	113263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8124630	8124630	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLCCI1-90	NM_138426	exon7	c.G1281A	p.K427K	AGTGAAGGTCTTT	.	132	49	120	0	.	4	3	1	0	0
ANKMY2	57037	ucsc.edu;bcgsc.ca	37	7	16649291	16649291	+	Silent	SNP	G	G	A	rs149044205	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKMY2-514	NM_020319	exon7	c.C846T	p.L282L	CTGCTGGAGGAGT	.	87	30	90	1	G|0.998;C|0.002	27	8	19	0	0
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18625005	18625005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC9-227	NM_001204144	exon5	c.C250T	p.R84C	GTTGTCCGTGAGA	.	159	74	115	0	.	1	1	0	0	0
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	7	19739713	19739713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TWISTNB-91	NM_001002926	exon3	c.587delG	p.G196fs	AGTTTTCCCCGAA	.	68	26	82	1	.	0	0	0	0	0
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20180768	20180768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACC1-93	NM_182762	exon7	c.C2360A	p.P787H	TAGGCAGGTTTCC	.	21	7	13	0	.	0	0	0	0	0
SP4	6671	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21516828	21516828	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SP4-95	NM_003112	exon4	c.C1810T	p.Q604X	CATTTGCAGCAAG	.	228	106	164	3	.	1	1	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21932249	21932249	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH11-146	.	.	.	.	TGCACTCAGTGGT	.	47	3	50	0	.	113	112	1	0	0
DFNA5	1687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24738664	24738664	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DFNA5-91	NM_001127453	exon10	c.T1472G	p.L491X	CTGCCTAAAGCAC	.	226	90	168	1	.	95	92	3	0	0
ADCYAP1R1	117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31117638	31117638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCYAP1R1-91	NM_001118	exon4	c.T190G	p.W64G	ACGTGTTGGAAGC	.	329	124	266	1	.	2	2	0	0	0
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36450230	36450230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANLN-517	NM_018685	exon6	c.C1204T	p.P402S	ATTACTCCAAATA	.	154	57	111	0	.	35	16	19	0	0
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39243895	39243895	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POU6F2-90	NM_007252	exon4	c.G252A	p.Q84Q	CAGTCAGACCCAC	.	109	38	91	1	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124123	45124123	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.A1656G	p.E552E	GCTTGTTTCTTCC	.	157	63	117	0	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124945	45124945	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.C834A	p.S278S	GAGGCTGGACTCA	.	126	52	115	0	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124952	45124952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.C827G	p.S276C	GACTCAGAGGACG	.	120	50	107	0	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45125542	45125542	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001146334	exon2	c.A237T	p.A79A	CGAGGGTGCCCCA	.	67	21	11	0	.	0	0	0	0	0
TBRG4	9238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45144212	45144212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBRG4-90	NM_001261834	exon4	c.G865A	p.A289T	AGATGGCCCGCAG	.	331	151	243	0	.	91	45	44	0	2
RAMP3	10268	hgsc.bcm.edu;bcgsc.ca	37	7	45222787	45222787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAMP3-90	NM_005856	exon3	c.223delA	p.M75fs	ACCGAGATGGAGG	.	57	22	43	0	.	0	0	0	0	0
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45954540	45954540	+	Missense_Mutation	SNP	C	C	T	rs17847676		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGFBP3-1009	NM_001013398	exon4	c.G773A	p.R258H	GAAGGGCGACACT	.	124	45	92	0	.	0	0	0	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47983029	47983029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD1L1-145	NM_138295	exon2	c.T124C	p.C42R	AGCTGCACAGATG	.	343	138	271	0	.	1	1	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311465	48311465	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA13-521	NM_152701	exon17	c.A2202G	p.L734L	TCTTTTATCATTT	.	69	34	79	0	.	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51096471	51096471	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COBL-95	NM_015198	exon10	c.C2322T	p.N774N	CACAGAGTTGCAC	.	88	36	59	0	.	0	0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	70255070	70255070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AUTS2-92	NM_015570	exon19	c.C2868A	p.S956R	CAACAGCACCTCG	.	199	12	78	4	.	3	3	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	70255628	70255628	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AUTS2-92	NM_015570	exon19	c.G3426A	p.E1142E	GCGGGAGCACGAG	.	113	49	53	0	.	18	11	7	0	0
TYW1B	441250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72159704	72159704	+	RNA	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	ACTGTCAAGGAAT	.	122	55	101	1	.	0	0	0	0	0
FZD9	8326	ucsc.edu;bcgsc.ca	37	7	72850023	72850023	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD9-1082	NM_003508	exon1	c.A1686G	p.G562G	CTACGGACGTGGC	.	272	95	162	2	.	4	3	1	0	0
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72985169	72985169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBL2-90	NM_012453	exon7	c.G1012A	p.A338T	AGAGGGCCAGGCG	.	58	23	32	0	.	40	23	17	0	0
WBSCR28	135886	ucsc.edu;bcgsc.ca	37	7	73279962	73279962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WBSCR28-90	NM_182504	exon3	c.A557T	p.Y186F	GTCTGTATTGGTG	.	301	124	272	2	.	0	0	0	0	0
GTF2IRD2B	389524	bcgsc.ca	37	7	74538966	74538966	+	Missense_Mutation	SNP	C	C	T	rs2539083	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTF2IRD2B-45	NM_001003795	exon5	c.C388T	p.P130S	ATGGTGCCTGTTC	.	1168	33	901	2	C|0.500;T|0.500	12	12	0	0	0
TMEM60	85025	hgsc.bcm.edu;broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM60-90	NM_032936	exon2	c.231delA	p.K77fs	CCAGGCTTTTTTT	.	108	45	69	0	.	0	0	0	0	0
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86537770	86537770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324L-97	NM_001142749	exon17	c.T2449C	p.F817L	TATAAAAGAAATG	.	46	17	33	0	.	0	0	0	0	0
CROT	54677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86998758	86998758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CROT-280	NM_001143935	exon8	c.T698C	p.V233A	TTGATGTAATACA	.	143	57	116	1	.	11	1	10	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963113	88963113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF804B-101	NM_181646	exon4	c.A817G	p.T273A	AAAGATACACACC	.	131	66	121	0	.	0	0	0	0	0
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92134188	92134188	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX1-91	NM_000466	exon12	c.C1929T	p.T643T	CTCTAGGGTTTTT	.	64	22	62	0	.	11	7	4	0	0
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99091800	99091800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF394-90	NM_032164	exon3	c.1038delT	p.F346fs	GGTCTCAAAAAGG	.	242	107	192	0	.	0	0	0	0	0
FAM200A	221786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99144838	99144839	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM200A-90	NM_145111	exon2	c.1192_1193del	p.398_398del	GGAAACATATAGT	.	108	39	70	0	.	0	0	0	0	0
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99507254	99507254	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM4-227	NM_033017	exon3	c.C501T	p.L167L	GGCCACGAGATTA	.	182	76	140	0	.	50	22	28	0	0
COPS6	10980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99688715	99688715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS6-658	NM_006833	exon7	c.C589T	p.R197C	GCGGAACGCATTG	.	146	14	105	0	.	248	231	17	0	0
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100417182	100417182	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHB4-1446	NM_004444	exon6	c.G1294T	p.E432X	CACCCTCTCGGTC	.	146	55	100	1	.	0	0	0	0	0
ACHE	43	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100490017	100490017	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACHE-92	NM_000665	exon3	c.G1491T	p.T497T	CTCTGCCGTGTAG	.	126	8	89	0	.	5	5	0	0	0
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAPEPLD-227	NM_001122838	exon3	c.842delT	p.F281fs	CCTGCGAAAAAAA	.	57	31	38	0	.	0	0	0	0	0
RELN	5649	bcgsc.ca	37	7	103230147	103230147	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RELN-574	NM_173054	exon28	c.C4041T	p.C1347C	TCCTTCGCATCCT	.	154	64	134	3	.	0	0	0	0	0
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105255170	105255170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L1-90	NM_020725	exon10	c.C1611T	p.N537N	ACTGGGGTTGCTG	.	136	53	117	0	.	2	0	2	0	0
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106508801	106508801	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3CG-1316	NM_002649	exon2	c.A795G	p.Q265Q	AAGCCAAAGCGAA	.	86	35	77	0	.	1	1	0	0	0
COG5	10466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106844034	106844034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COG5-93	NM_006348	exon22	c.A2510G	p.E837G	TTGCCTTCTCTAC	.	80	32	75	0	.	44	22	22	0	0
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107217974	107217974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUS4L-90	NM_001270419	exon8	c.T923C	p.I308T	CAATCATAGATTA	.	116	47	125	0	.	6	3	3	0	0
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107696427	107696427	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMB4-140	NM_007356	exon25	c.C3405A	p.T1135T	CTTCTGGGTACCT	.	91	45	68	0	.	0	0	0	0	0
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108112846	108112846	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA8-135	NM_001256008	exon10	c.G2348A	p.X783X	ACTCATCACAATT	.	259	94	210	0	.	62	30	32	0	0
LRRN3	54674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	110764462	110764462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRN3-154	NM_018334	exon2	c.C1634T	p.S545F	CAAGTTCTAAAAT	.	66	37	51	1	.	0	0	0	0	0
DOCK4	9732	ucsc.edu;bcgsc.ca	37	7	111428773	111428773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK4-26	NM_014705	exon32	c.A3346G	p.S1116G	TCAGGCTATCCAG	.	207	108	162	2	.	3	3	0	0	0
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114655908	114655908	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDFIC-91	NM_199072	exon5	c.T987C	p.C329C	GGACTGTGGCATC	.	113	45	89	0	.	10	3	7	0	0
ASZ1	136991	broad.mit.edu;bcgsc.ca	37	7	117062381	117062381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASZ1-515	NM_130768	exon3	c.T238C	p.W80R	GAGTCCATCCATA	.	74	36	77	2	.	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121608015	121608015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRZ1-699	NM_001206838	exon3	c.T135A	p.N45K	ACTGAATCAAAAA	.	130	58	104	0	.	0	0	0	0	0
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124404170	124404170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR37-523	NM_005302	exon1	c.C861T	p.C287C	GTTGTGGCACACG	.	162	58	127	0	.	0	0	0	0	0
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086177	126086177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRM8-581	NM_001127323	exon10	c.A2680G	p.K894E	ATGACTTACTGTT	.	150	71	117	0	.	0	0	0	0	0
IMPDH1	3614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128038611	128038611	+	Missense_Mutation	SNP	C	C	T	rs121912550		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPDH1-230	NM_000883	exon10	c.G931A	p.D311N	TCAGGTCGGTGCG	.	118	54	91	0	.	15	9	6	0	0
KCP	375616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128517620	128517620	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCP-68	.	.	.	.	ACAGAGGCAGGCA	.	574	258	406	2	.	6	4	2	0	0
KCP	375616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128518652	128518652	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCP-68	.	.	.	.	AGGAGCAGCCCCT	.	109	36	84	0	.	14	11	3	0	0
IRF5	3663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128585921	128585921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRF5-226	NM_001098627	exon3	c.A218T	p.K73I	CAGGGAAATACAC	.	142	66	122	1	.	0	0	0	0	0
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133842788	133842788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRGUK-227	NM_144648	exon6	c.G671A	p.G224D	GTATAGGCAATGA	.	114	37	85	0	.	0	0	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135262571	135262571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUP205-207	NM_015135	exon6	c.C676T	p.Q226X	TGCAGGCAGTCTC	.	108	44	57	0	.	5	5	0	0	0
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139655387	139655387	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBXAS1-155	NM_001166253	exon8	c.A810G	p.R270R	CCCCAGACCTATC	.	75	30	43	0	.	2	2	0	0	0
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140246681	140246681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DENND2A-138	NM_015689	exon11	c.T2096A	p.M699K	CTTCTCATGAGTG	.	182	73	150	0	.	4	4	0	0	0
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141333740	141333740	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGK-290	NM_018238	exon10	c.C628T	p.R210X	GGCCTTCGATGGG	.	84	35	74	0	.	28	27	1	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141736707	141736707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGAM-70	NM_004668	exon18	c.C2161T	p.P721S	CTATTGCCCTACC	.	104	48	107	0	.	0	0	0	0	0
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141805626	141805626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGAM-70	NM_004668	exon48	c.G5509A	p.D1837N	AGCATCGATGTGA	.	80	30	95	1	.	3	2	1	0	0
PRSS58	136541	broad.mit.edu	37	7	141955448	141955448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRSS58-24	NM_001001317	exon3	c.86delC	p.P29fs	AAGTAAGGGGGAG	.	233	8	169	0	.	0	0	0	0	0
PRSS1	5644	bcgsc.ca	37	7	142458511	142458511	+	Missense_Mutation	SNP	G	G	T	rs138464021	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRSS1-577	NM_002769	exon2	c.G146T	p.G49V	TCTGTGGTGGCTC	.	283	21	176	1	G|0.951;T|0.049	0	0	0	0	0
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142562373	142562373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHB6-1489	NM_004445	exon7	c.G815A	p.G272E	AGGATGGAGTAGG	.	102	26	53	0	.	1	1	0	0	0
OR6V1	346517	broad.mit.edu;mdanderson.org	37	7	142750331	142750331	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR6V1-23	NM_001001667	exon1	c.G894A	p.V298V	AACAGTGCTACAG	.	48	19	31	0	.	0	0	0	0	0
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143088818	143088818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA1-1436	NM_005232	exon17	c.G2747A	p.R916Q	ACGGTTCGATATG	.	136	8	116	0	.	0	0	0	0	0
OR2F2	135948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143632752	143632752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2F2-94	NM_001004685	exon1	c.A427G	p.R143G	TGTGCTAGGTTGG	.	342	136	273	1	.	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462337	149462337	+	Silent	SNP	G	G	A	rs855667	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF467-90	NM_207336	exon5	c.C1254T	p.P418P	CACCACGGGATCG	.	6	4	0	0	G|0.763;A|0.237	2	1	1	0	0
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149493469	149493469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198455	exon44	c.G6545A	p.R2182K	TCCCCAGAAACTG	.	165	72	135	1	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	149508059	149508059	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198455	exon66	c.9453delC	p.Y3151fs	CCTCTACCCCCCG	.	83	32	58	0	.	0	0	0	0	0
LRRC61	65999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034194	150034194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC61-90	NM_023942	exon2	c.G244A	p.V82I	CTCAATGTCTCCA	.	97	34	60	1	.	0	0	0	0	0
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150069842	150069842	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPIN1-69	NM_001099695	exon3	c.G1683A	p.S561S	GGTGTCGCACCGG	.	149	64	48	0	.	59	33	26	0	0
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150174335	150174335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIMAP8-95	NM_175571	exon5	c.G1465A	p.V489M	CAGGAGGTGGTGG	.	212	83	162	0	.	1	1	0	0	0
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771569	150771569	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A2-90	NM_003040	exon18	c.T2874C	p.Y958Y	CACCTATACCCAG	.	90	39	91	0	.	0	0	0	0	0
SHH	6469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	155596348	155596348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHH-1134	NM_000193	exon3	c.C635T	p.T212I	AGCTTGGTGCCGC	.	81	36	15	0	.	0	0	0	0	0
VIPR2	7434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158829448	158829448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VIPR2-91	NM_003382	exon7	c.G743C	p.G248A	CCCCATCCGATCA	.	148	56	111	1	.	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2909997	2909997	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD1-86	NM_033225	exon50	c.G7647A	p.P2549P	CGTGGGCGGCTTC	.	72	5	89	0	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10465815	10465815	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RP1L1-139	NM_178857	exon4	c.C5793T	p.D1931D	TGGCTCGTCCTCC	.	26	18	40	0	.	0	0	0	0	0
SLC35G5	83650	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11189624	11189624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_054028	exon1	c.G1009A	p.E337K	AAGGTGGAGGAGT	.	60	21	102	0	.	0	0	0	0	0
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12580711	12580711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LONRF1-91	NM_152271	exon12	c.T2216C	p.V739A	GGGTCTACAGGGA	.	51	37	105	0	.	4	2	2	0	0
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20110358	20110358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LZTS1-91	NM_021020	exon2	c.A1084G	p.K362E	TGAGCTTGGTCTC	.	73	63	92	1	.	5	4	1	0	0
NEFM	4741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24775356	24775356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEFM-577	NM_005382	exon3	c.A1988G	p.E663G	TGGAAGAGAAAGG	.	175	132	222	0	.	2	1	1	0	0
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25191625	25191625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK5-71	NM_024940	exon21	c.C2105T	p.S702L	TTATTTCACTGAT	.	60	47	84	2	.	0	0	0	0	0
DOCK5	80005	ucsc.edu;bcgsc.ca	37	8	25261192	25261192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK5-71	NM_024940	exon48	c.C5045T	p.T1682I	TTTCCACCTCTTC	.	164	138	202	3	.	28	0	28	0	0
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25364499	25364499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDCA2-90	NM_152562	exon15	c.G2317A	p.A773T	GGAGCTGCAGAAG	.	43	38	50	0	.	6	0	6	0	0
KIF13B	23303	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	28929234	28929234	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF13B-22	NM_015254	exon39	c.C5121T	p.V1707V	CACGGTGACGAAC	.	107	87	93	1	.	0	0	0	0	0
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	32620757	32620757	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRG1-525	NM_013960	exon12	c.A1290T	p.L430L	TGAGCTAAGGAGA	.	106	79	150	0	.	0	0	0	0	0
GOT1L1	137362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37792696	37792696	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOT1L1-23	NM_152413	exon8	c.C967T	p.L323L	TGGTTAGCATGAT	.	62	49	119	1	.	0	0	0	0	0
STAR	6770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38003893	38003893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAR-91	NM_000349	exon4	c.G379T	p.D127Y	GCTGGTCCACCAC	.	48	36	73	0	.	4774	11	4753	4	6
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41566384	41566384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANK1-716	NM_001142446	exon17	c.C2009T	p.T670M	AGGGGCGTCACAC	.	65	47	93	0	.	1	0	1	0	0
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48689404	48689404	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKDC-1515	NM_001081640	exon85	c.12088+1G>A	.	ATCTTACCAAGTA	.	31	21	58	0	.	1	0	1	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53044610	53044610	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ST18-95	NM_014682	exon22	c.C2574T	p.S858S	TTTCCAGGAGAGG	.	121	90	217	0	.	0	0	0	0	0
RP1	6101	bcgsc.ca	37	8	55533938	55533938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RP1-102	NM_006269	exon2	c.C412T	p.P138S	CACTCACCGCCCC	.	39	35	20	1	.	0	0	0	0	0
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57905818	57905818	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPAD1-91	NM_017813	exon1	c.C327T	p.G109G	CACGTCGCCGCTG	.	29	21	36	0	.	32	2	30	0	0
SGK3	23678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67755735	67755735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGK3-1003	NM_001033578	exon14	c.G1027A	p.D343N	ACTGTAGATTGGT	.	78	60	97	0	.	7	0	7	0	0
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70981595	70981595	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM14-93	NM_024504	exon2	c.C501T	p.S167S	TAACTGGGAGGTC	.	140	114	194	0	.	0	0	0	0	0
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71057034	71057034	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOA2-639	NM_006540	exon13	c.G2655A	p.Q885Q	TAAATTCTGGTTT	.	116	91	212	1	.	9	1	8	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72977700	72977700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPA1-230	NM_007332	exon4	c.G538A	p.A180T	GCAATGCTTCGCT	.	98	84	164	0	.	0	0	0	0	0
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73848647	73848647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNB2-158	NM_004770	exon3	c.G1057A	p.V353I	AGCCTGGTATTTT	.	96	68	135	0	.	0	0	0	0	0
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87443898	87443898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WWP1-659	NM_007013	exon14	c.A1527C	p.E509D	TCGTGAAGGTGTA	.	141	112	250	0	.	18	1	17	0	0
DCAF4L2	138009	broad.mit.edu;bcgsc.ca	37	8	88885852	88885852	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF4L2-91	NM_152418	exon1	c.G348A	p.P116P	TTTGTGCGGGTAT	.	93	9	124	1	.	0	0	0	0	0
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90937358	90937358	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSGIN2-68	NM_001126111	exon6	c.A1248G	p.L416L	TCTTTTATCTGAT	.	41	30	78	0	.	9	2	7	0	0
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023263	93023263	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198679	exon5	c.C702T	p.F234F	CAGTGGGAAGTTA	.	62	42	120	0	.	0	0	0	0	0
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93029539	93029539	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198679	exon3	c.G318A	p.T106T	AGATTGCGTCTTC	.	107	79	143	1	.	0	0	0	0	0
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101299882	101299882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF19A-229	NM_015435	exon3	c.T521C	p.I174T	CAACTAATATTAA	.	50	42	61	0	.	9	1	8	0	0
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110457219	110457219	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKHD1L1-145	NM_177531	exon38	c.T5121A	p.Y1707X	GAATTATACGGCC	.	80	56	141	1	.	0	0	0	0	0
CSMD3	114788	ucsc.edu	37	8	113418864	113418864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD3-1132	NM_198123	exon35	c.G5698C	p.V1900L	AAAGAACCGATGA	.	42	4	81	0	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114110996	114110996	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD3-1132	NM_052900	exon5	c.A906T	p.P302P	GGTAGGTGGCTCA	.	60	49	63	0	.	0	0	0	0	0
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126067843	126067843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0196-92	NM_014846	exon17	c.G2087T	p.G696V	ATGATGCCAACCA	.	47	37	99	0	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133900673	133900673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon10	c.G2621A	p.G874D	TAAATGGCCAACT	.	100	80	128	0	.	1	0	1	0	0
SLA	6503	broad.mit.edu;bcgsc.ca	37	8	134060153	134060153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLA-279	NM_006748	exon4	c.G394C	p.D132H	CCTTGTCTCTGCC	.	57	45	75	2	.	2	2	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134146920	134146920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon48	c.A8189G	p.D2730G	TTTCAGATGGAGC	.	46	31	69	0	.	0	0	0	0	0
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135621018	135621018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFAT-90	NM_020863	exon5	c.T739C	p.Y247H	TGGCGTATTCCTG	.	119	99	129	0	.	3	0	3	0	0
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141749130	141749130	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTK2-1517	NM_005607	exon21	c.C1878T	p.D626D	CCATACGTCACTA	.	30	20	36	0	.	61	7	54	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142517208	142517208	+	RNA	SNP	C	C	T	rs139067780	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	ACCCGTCGGGGTG	.	53	39	94	0	C|0.999;T|0.001	0	0	0	0	0
KIFC2	90990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145697998	145697998	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC2-92	NM_145754	exon16	c.C1770T	p.A590A	CGCCGCCACCGCC	.	29	17	12	0	.	6	0	6	0	0
FOXH1	8928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145699949	145699949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXH1-226	NM_003923	exon3	c.G770A	p.G257D	GCGGTGCCCTGCA	.	37	32	64	1	.	0	0	0	0	0
ZNF517	340385	broad.mit.edu;bcgsc.ca	37	8	146032798	146032798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF517-90	NM_213605	exon5	c.A497G	p.D166G	AGGAAGACCTGGG	.	46	33	75	2	.	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	8	8	0	0	G|0.992;C|0.006	0	0	0	0	0
RLN2	6019	hgsc.bcm.edu	37	9	5304561	5304561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RLN2-90	NM_005059	exon1	c.20delT	p.F7fs	AGGTGGAAAAAAA	.	339	16	301	2	.	0	0	0	0	0
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049096	7049096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2386C	p.A796P	AGGTGGGCCCATG	.	69	22	90	0	.	0	0	0	0	0
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049109	7049109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2399T	p.C800F	TCATGTGCGCCGT	.	84	31	102	0	.	13	13	0	0	0
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14776240	14776240	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM1-138	NM_001177704	exon2	c.A12G	p.Q4Q	GGATTCTTGTGTC	.	146	63	120	0	.	0	0	0	0	0
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16436339	16436339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BNC2-92	NM_017637	exon6	c.T1853A	p.M618K	GTGGCCATCATCA	.	74	39	72	0	.	0	0	0	0	0
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19520911	19520911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A2-517	NM_020344	exon9	c.A1717T	p.I573F	CAAAAATGTTGCT	.	193	89	157	0	.	0	0	0	0	0
CDKN2A	1029	hgsc.bcm.edu	37	9	21971150	21971150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDKN2A-23992	NM_058195	exon2	c.C251A	p.A84D	AGTTGGGCTCCGC	.	36	12	9	0	.	36	18	18	0	0
TMEM215	401498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32784389	32784389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM215-90	NM_212558	exon2	c.C208A	p.P70T	AAGTGGCCAGAGA	.	150	71	141	1	.	0	0	0	0	0
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572356	33572356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001244752	exon16	c.T3031C	p.X1011Q	CTTCTCTAGAATC	.	213	107	170	0	.	0	0	0	0	0
C9orf24	84688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34381072	34381072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf24-91	NM_032596	exon5	c.G530A	p.R177Q	GTGATCCGCGGCA	.	138	73	56	1	.	1	1	0	0	0
DNAJB5	25822	ucsc.edu;bcgsc.ca	37	9	34993362	34993362	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJB5-226	NM_001135004	exon3	c.G474A	p.K158K	GGAGAAGTTTAAG	.	209	71	167	3	.	22	14	8	0	0
C9orf131	138724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf131-90	NM_203299	exon2	c.1024delC	p.P342fs	ATGCCACCCCCCT	.	85	32	51	0	.	0	0	0	0	0
C9orf131	138724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35044520	35044520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf131-90	NM_203299	exon2	c.C1894A	p.Q632K	ATGGAGCAAAAAG	.	91	33	63	1	.	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35720206	35720206	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN1-609	NM_006289	exon13	c.C1294T	p.L432L	GCTGCAGGACTGT	.	142	33	93	0	.	0	0	0	0	0
CREB3	10488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35735312	35735312	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CREB3-90	NM_006368	exon6	c.A552G	p.K184K	CTTGAAATACACA	.	177	57	114	1	.	0	0	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	rs150485511		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCIN-92	NM_005893	exon1	c.G841A	p.V281M	GATTCCGTGGTCA	.	111	49	81	0	G|1.000;A|0.000	0	0	0	0	0
CCIN	881	ucsc.edu;bcgsc.ca	37	9	36170696	36170696	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCIN-92	NM_005893	exon1	c.G1197C	p.R399R	TGAGCGGAAGGAA	.	225	96	194	2	.	1	0	1	0	0
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37744759	37744759	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD1-159	NM_014907	exon16	c.G2730A	p.E910E	GAGGGAGACCAAG	.	88	43	86	2	.	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37745283	37745283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD1-159	NM_014907	exon16	c.A3254G	p.D1085G	GAAGTGATGAATG	.	91	32	72	0	.	0	0	0	0	0
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39109179	39109179	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNTNAP3-91	NM_033655	exon15	c.G2343A	p.G781G	CAGTGGCCCCAGT	.	456	202	389	0	.	3	0	3	0	0
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71628334	71628334	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKACG-1061	NM_002732	exon1	c.A675G	p.L225L	CACCCCTAGGGCC	.	105	47	69	0	.	0	0	0	0	0
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71831374	71831374	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TJP2-115	NM_001170416	exon3	c.G327A	p.L109L	TGGGCTGCTCCAG	.	49	22	47	1	.	0	0	0	0	0
APBA1	320	hgsc.bcm.edu	37	9	72131953	72131953	+	Silent	SNP	C	C	T	rs149995729		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APBA1-91	NM_001163	exon2	c.G174A	p.E58E	GAGGTCCTCGAGG	.	38	21	0	0	C|0.995;T|0.005	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79325100	79325100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRUNE2-157	NM_015225	exon8	c.G2090A	p.R697K	GAGGCTCTCCTAT	.	64	29	47	0	.	0	0	0	0	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267520	82267520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.G403A	p.A135T	CTCCAGGCCCAGC	.	116	53	112	0	.	2	2	0	0	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267635	82267635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.C518T	p.S173F	CCCTCTCCAGTGC	.	96	43	74	0	.	18	9	9	0	0
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85926825	85926825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD3-91	NM_174938	exon8	c.T750A	p.N250K	TCTCTTATTTCCC	.	35	15	30	0	.	4	4	0	0	0
KIF27	55582	bcgsc.ca	37	9	86504166	86504166	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF27-523	NM_017576	exon7	c.C1812T	p.V604V	TGTGTGGACCTTG	.	134	63	138	3	.	4	4	0	0	0
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88248284	88248284	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGTPBP1-158	NM_015239	exon14	c.T1188C	p.Y396Y	TAAATCATAGTCC	.	29	19	36	0	.	0	0	0	0	0
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88576991	88576991	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAA35-92	NM_024635	exon6	c.C412G	p.P138A	CATAATCCAGACT	.	78	39	91	0	.	10	6	4	0	0
NFIL3	4783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94171973	94171973	+	Silent	SNP	C	C	T	rs141662610		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFIL3-90	NM_005384	exon2	c.G1044A	p.T348T	TTTTTGCGTGGCC	.	85	31	75	1	C|1.000;T|0.000	75	42	33	0	0
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96051773	96051773	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNK2-765	NM_006648	exon19	c.C4737T	p.G1579G	GGTGGGCGACAGA	.	86	37	44	0	.	0	0	0	0	0
C9orf129	445577	bcgsc.ca	37	9	96097703	96097703	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf129-23	NM_001098808	exon3	c.T318C	p.S106S	CGATGTAGAAGAG	.	919	345	694	3	.	122	121	1	0	0
FAM120A	23196	bcgsc.ca	37	9	96326794	96326794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM120A-90	NM_014612	exon18	c.A3329G	p.E1110G	CTCTGGAGGCAGC	.	105	44	103	3	.	136	63	73	0	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98244481	98244481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTCH1-3532	NM_000264	exon4	c.T589C	p.W197R	ATTTCCACTGCCT	.	50	20	39	0	.	0	0	0	0	0
ZNF367	195828	hgsc.bcm.edu;mdanderson.org	37	9	99180071	99180071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF367-90	NM_153695	exon1	c.C244T	p.L82F	GGCTGAGCGTCAC	.	32	11	9	0	.	2	2	0	0	0
OR13C8	138802	broad.mit.edu	37	9	107331903	107331903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR13C8-70	NM_001004483	exon1	c.G455T	p.G152V	TCACTGGGCTTGT	.	74	3	73	0	.	0	0	0	0	0
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108126992	108126992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC44A1-94	NM_080546	exon10	c.A1244G	p.Y415C	CATACTATTTTAC	.	163	66	130	0	.	0	0	0	0	0
FAM206A	54942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	111696815	111696815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_017832	exon1	c.G49A	p.D17N	CTCGTGGATCGAT	.	463	190	210	0	.	7	4	3	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113192665	113192665	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SVEP1-75	NM_153366	exon33	c.G5419C	p.V1807L	CACCTACTGTATA	.	134	62	122	0	.	0	0	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114148674	114148674	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0368-68	NM_001080398	exon33	c.G4044A	p.W1348X	AACTCGCCACATA	.	114	45	107	0	.	29	26	3	0	0
PTBP3	9991	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114986217	114986217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001244898	exon14	c.G1591A	p.A531T	GAATTGCTTCTTC	.	72	29	77	1	.	40	18	22	0	0
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116269609	116269609	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS3-227	NM_144488	exon14	c.C1128T	p.V376V	CATGGTCCCCCAG	.	195	80	130	0	.	0	0	0	0	0
TNC	3371	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117803271	117803271	+	Missense_Mutation	SNP	C	C	T	rs2274750	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNC-517	NM_002160	exon19	c.G5341A	p.A1781T	TCATGGCGATGAT	.	266	117	171	0	C|0.937;T|0.063	288	143	145	0	0
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119488071	119488071	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASTN2-161	NM_014010	exon15	c.C2632T	p.L878L	GCCACAGCTGCTG	.	122	53	120	0	.	4	0	4	0	0
MEGF9	1955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123367687	123367687	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080497	exon6	c.A1590T	p.G530G	CACAAATCCCATT	.	248	92	192	2	.	6	2	4	0	0
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124064309	124064309	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSN-154	NM_000177	exon2	c.G213A	p.W71X	GATCTGGCGTGTG	.	300	137	227	0	.	157	153	4	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377151	125377151	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1Q1-69	NM_012364	exon1	c.C135T	p.I45I	GGCCATCATCACA	.	216	6	148	0	.	0	0	0	0	0
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125391061	125391061	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1B1-68	NM_001004450	exon1	c.A754T	p.T252S	CCATGGTGAGGTG	.	136	54	139	0	.	0	0	0	0	0
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125673275	125673275	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB6-90	NM_006626	exon2	c.C1077T	p.C359C	CTTCAAGCACACA	.	246	120	160	0	.	8	5	3	0	0
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126132455	126132455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRB2-91	NM_173689	exon7	c.G1123A	p.D375N	TGCAGTGACACTG	.	75	26	70	1	.	0	0	0	0	0
MAPKAP1	79109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128322005	128322005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPKAP1-678	NM_001006618	exon6	c.A755T	p.E252V	ATGGGCTCATTGG	.	159	75	135	2	.	70	33	37	0	0
ZBTB34	403341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129642194	129642194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB34-69	NM_001099270	exon2	c.C504T	p.C168C	ATATTGCTCTCAG	.	116	57	92	0	.	1	1	0	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131346591	131346591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTAN1-158	NM_003127	exon17	c.C2224T	p.R742C	CAGGCCCGCCAGT	.	87	27	75	0	.	34	18	16	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	7	7	0	0	A|0.006;C|0.994	0	0	0	0	0
PKN3	29941	broad.mit.edu;bcgsc.ca	37	9	131469666	131469666	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKN3-521	NM_013355	exon6	c.A817T	p.K273X	CCTGTGAAGCCCA	.	56	24	39	1	.	2	2	0	0	0
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKN3-521	NM_013355	exon17	c.2030_2032del	p.677_678del	TACACGAGAAGAA	.	108	30	83	0	.	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	133556768	133556768	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM12-90	NM_021619	exon5	c.G816A	p.V272V	CTTCGTGTGCCGC	.	150	30	72	0	.	0	0	0	0	0
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134366821	134366821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRRC2B-24	NM_013318	exon28	c.C6235T	p.P2079S	ACCATGCCACTGC	.	198	84	134	0	.	6	2	4	0	0
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136037733	136037733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBGT1-90	NM_021996	exon2	c.C67A	p.L23M	ACCACAGGACACT	.	121	51	81	0	.	0	0	0	0	0
DBH	1621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136501745	136501745	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DBH-516	NM_000787	exon1	c.C252T	p.G84G	GGCTGGCGTCCTG	.	69	26	51	0	.	0	0	0	0	0
KIAA1984	84960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139700573	139700573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1984-91	NM_001039374	exon10	c.A992G	p.N331S	AGGAGAACCTGGA	.	90	38	70	1	.	1	0	1	0	0
SSNA1	8636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140084326	140084326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SSNA1-153	NM_003731	exon3	c.C320T	p.T107I	AGGCTACAGCCCC	.	113	47	100	0	.	160	94	66	0	0
C9orf173	441476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140145761	140145761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf173-46	NM_001256701	exon1	c.C23T	p.A8V	AGAAGGCAGTGAA	.	195	87	165	1	.	0	0	0	0	0
EHMT1	79813	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140671199	140671199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EHMT1-154	NM_001145527	exon12	c.A1921G	p.T641A	GAGGTGACGATAG	.	246	110	163	1	.	35	15	20	0	0
CACNA1B	774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140850238	140850238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1B-138	NM_001243812	exon8	c.G1159A	p.G387R	CTCAACGGGTACC	.	160	68	103	1	.	0	0	0	0	0
PPP2R3B	28227	broad.mit.edu;bcgsc.ca	37	X	299353	299353	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP2R3B-136	NM_013239	exon12	c.G1563A	p.E521E	CCAGGGCTCTCCC	.	76	55	43	1	.	0	0	0	0	0
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12728521	12728521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD4-263	NM_014728	exon14	c.A1474G	p.I492V	TAGCCTATCACGC	.	53	46	31	0	.	0	0	0	0	0
DCAF8L2	347442	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27765447	27765447	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF8L2-42	NM_001136533	exon1	c.A435G	p.E145E	GGAGGAAGAAGAA	.	30	27	26	0	.	0	0	0	0	0
CASK	8573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41437770	41437770	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASK-616	NM_001126054	exon15	c.G1326A	p.Q442Q	GTGAGTCTGAAGT	.	37	30	27	0	.	0	0	0	0	0
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	240	5	123	2	.	3	0	3	0	0
SMC1A	8243	broad.mit.edu	37	X	53432788	53432788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMC1A-232	NM_006306	exon10	c.C1646T	p.S549L	TTCTCCGAGTCCA	.	145	5	121	0	.	14	14	0	0	0
OTUD6A	139562	bcgsc.ca	37	X	69282461	69282461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTUD6A-541	NM_207320	exon1	c.87delA	p.L29fs	GAGCTTAAAAAAC	.	266	210	178	4	.	0	0	0	0	0
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78616967	78616967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITM2A-131	NM_004867	exon5	c.T562A	p.Y188N	GCAGATATCTGCC	.	163	137	173	1	.	0	0	0	0	0
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84519342	84519342	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF711-134	NM_021998	exon5	c.T684C	p.D228D	CAGTGATGGTTCA	.	143	125	120	0	.	2	2	0	0	0
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008936	88008936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPXCR1-133	NM_001184771	exon3	c.A521G	p.K174R	GGGTAAAGCGAAA	.	93	78	65	0	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	105132368	105132368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRK-630	NM_198465	exon5	c.G334A	p.A112T	TATGGAGCATTTT	.	235	16	150	0	.	0	0	0	0	0
NRK	203447	broad.mit.edu	37	X	105153236	105153236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRK-630	NM_198465	exon13	c.G1603A	p.A535T	GGCCAGGCCCCTG	.	260	10	227	0	.	0	0	0	0	0
COL4A6	1288	ucsc.edu;bcgsc.ca	37	X	107681217	107681217	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL4A6-199	NM_001847	exon2	c.G21A	p.W7X	GAGCAGCCACAAC	.	222	193	195	2	.	0	0	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110406821	110406821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAK3-1043	NM_001128168	exon8	c.C740A	p.A247D	CCATTGCTTCACC	.	85	75	102	0	.	0	0	0	0	0
KLHL13	90293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117033021	117033021	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL13-556	NM_001168299	exon8	c.G1827A	p.V609V	TTTCTGCACTATC	.	97	83	99	1	.	12	0	12	0	0
ZBTB33	10009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119387857	119387857	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB33-132	NM_006777	exon2	c.587delT	p.I196fs	ATGTCATTTTTTG	.	65	54	46	0	.	0	0	0	0	0
THOC2	57187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122757038	122757038	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THOC2-133	NM_001081550	exon29	c.G3600A	p.V1200V	ATTTTGCACACTG	.	88	71	116	1	.	27	1	26	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122820490	122820490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THOC2-133	NM_001081550	exon8	c.G676A	p.D226N	AGAAGTCATCGTG	.	120	105	124	0	.	6	0	6	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123215366	123215366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAG2-134	NM_001042749	exon28	c.C2912T	p.A971V	CCATTGCCATGCT	.	70	63	59	0	.	0	0	0	0	0
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125298569	125298569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF12L2-113	NM_001013628	exon1	c.G1339T	p.G447W	GCCCCCCAGCCAC	.	171	140	140	2	.	0	0	0	0	0
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130416500	130416500	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF1-133	NM_001555	exon7	c.C1164T	p.G388G	ATAGATGCCAGTA	.	196	174	148	1	.	0	0	0	0	0
MAGEC3	139081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140926205	140926205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGEC3-555	NM_138702	exon1	c.T104C	p.V35A	CAGTGGTGCTCCC	.	174	152	102	1	.	0	0	0	0	0
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149931073	149931073	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MTMR1-131	NM_003828	exon15	c.C1869A	p.A623A	GCTGGCCGTCAGG	.	255	223	178	1	.	11	0	11	0	0
PRRG3	79057	ucsc.edu;bcgsc.ca	37	X	150869181	150869181	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRRG3-134	NM_024082	exon4	c.C372T	p.R124R	CAGTCGCGCCGGG	.	134	113	118	2	.	0	0	0	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482236	152482236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGEA1-622	NM_004988	exon3	c.C775T	p.P259S	GTGCGGGATCACT	.	444	10	134	1	.	1	1	0	0	0
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152685761	152685761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP92-62	NM_001136273	exon3	c.G236T	p.R79I	TCCCCAGAACCTG	.	205	80	60	0	.	0	0	0	0	0
ABCD1	215	hgsc.bcm.edu;broad.mit.edu	37	X	152994692	152994692	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCD1-130	NM_000033	exon2	c.G906A	p.E302E	GGTGGAGCTGGCC	.	80	4	62	0	.	1	1	0	0	0
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153577327	153577327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLNA-599	NM_001110556	exon48	c.C7834T	p.R2612W	AGAGCCGGCTGCC	.	192	172	144	0	.	234	32	202	0	0
FLNA	2316	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153599554	153599554	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLNA-599	NM_001456	exon2	c.C60T	p.G20G	GTCGACGCCGCCG	.	145	131	41	1	.	110	7	103	0	0
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153689660	153689660	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLXNA3-132	NM_017514	exon3	c.C816T	p.F272F	AGAGTTCTACTCA	.	106	87	69	0	.	18	2	16	0	0
FAM3A	60343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153740192	153740192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM3A-130	NM_001171134	exon3	c.C140T	p.S47L	GTCACCGAGCTCT	.	34	29	21	0	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39751304	39751305	+	Frame_Shift_Ins	INS	-	-	GGTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACF1-165	NM_012090	exon15	c.1397_1398insGGTA	p.P466fs	GACAACCGGTACA	.	214	73	181	1	.	0	0	0	0	0
LRRC42	115353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54423901	54423902	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC42-90	NM_001256409	exon4	c.553_554insT	p.L185fs	TGCAAGCTTGGAG	.	167	52	120	0	.	0	0	0	0	0
DPYD	1806	hgsc.bcm.edu;bcgsc.ca	37	1	98165042	98165043	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYD-278	NM_000110	exon6	c.545_546insA	p.M182fs	TCAGACATTTTTT	.	102	41	96	1	.	0	0	0	0	0
AKNAD1	254268	hgsc.bcm.edu	37	1	109369885	109369886	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKNAD1-93	NM_152763	exon11	c.1878_1879insA	p.N626fs	TCCACAGTTGATC	.	96	38	93	2	.	0	0	0	0	0
SYCP1	6847	hgsc.bcm.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYCP1-91	NM_003176	exon32	c.2891_2892insA	p.R964fs	TGGATAGAAAAAA	.	94	23	69	2	.	0	0	0	0	0
SNRPE	6635	bcgsc.ca	37	1	203832838	203832839	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SNRPE-514	NM_003094	exon3	c.129_130insC	p.I43fs	GCGGATAGAAGGC	.	321	139	316	2	.	0	0	0	0	0
KIN	22944	broad.mit.edu;bcgsc.ca	37	10	7817764	7817765	+	Splice_Site	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIN-230	NM_012311	exon7	c.559-2->T	.	ACCTCCTAAAAAA	.	32	9	25	0	.	0	0	0	0	0
TRDMT1	1787	broad.mit.edu	37	10	17199765	17199766	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRDMT1-227	NM_004412	exon8	c.562_563insC	p.K188fs	CAATTTTGGGGAA	.	14	6	13	0	.	0	0	0	0	0
C10orf40	283025	hgsc.bcm.edu;bcgsc.ca	37	10	61718432	61718433	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	TCATCACTTTTTT	.	68	31	72	0	.	0	0	0	0	0
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTRC-659	NM_033637	exon14	c.1773_1774insC	p.E591fs	AGCTGAACCCCCC	.	198	48	149	0	.	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	608624	608625	+	Frame_Shift_Ins	INS	-	-	GACCGCTCCAG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHRF1-22	NM_020901	exon14	c.3165_3166insGACCGCTCCAG	p.S1055fs	CTCCAGTGACCGC	.	67	10	137	0	.	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu;bcgsc.ca	37	11	64421196	64421197	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRXN2-232	NM_015080	exon13	c.2390-2->C	.	GCAGTCTGGGGGG	.	57	40	122	0	.	0	0	0	0	0
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56347513	56347514	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DGKA-255	NM_001345	exon24	c.2169_2170insC	p.P723fs	GGGCCCACCCCCC	.	129	50	93	0	.	0	0	0	0	0
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56638929	56638930	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.2450_2451insG	p.S817fs	AGGTACGAAAACG	.	204	81	154	0	.	0	0	0	0	0
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu	37	12	80201041	80201042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R12A-273	NM_001244990	exon13	c.1620_1621insA	p.N540fs	TGAGCTATTTTTT	.	28	12	16	0	.	0	0	0	0	0
CCER1	196477	broad.mit.edu	37	12	91348097	91348098	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152638	exon1	c.423_424insA	p.K141fs	CCAGCGCTTCTTC	.	7	3	5	0	.	0	0	0	0	0
OR5AU1	390445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21623596	21623597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR5AU1-68	NM_001004731	exon1	c.589_590insT	p.V197fs	AGCCCACAATCAG	.	124	53	82	0	.	0	0	0	0	0
JPH4	84502	hgsc.bcm.edu	37	14	24040435	24040436	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JPH4-92	NM_001146028	exon5	c.1505_1506insG	p.A502fs	GCGCCTGCCCCCC	.	118	31	96	0	.	0	0	0	0	0
TUBGCP5	114791	hgsc.bcm.edu;bcgsc.ca	37	15	22855112	22855113	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBGCP5-91	NM_052903	exon13	c.1573_1574insA	p.E525fs	AATGAAGAAAAAA	.	361	156	298	2	.	0	0	0	0	0
EIF2AK4	440275	hgsc.bcm.edu;bcgsc.ca	37	15	40326638	40326639	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2AK4-757	NM_001013703	exon38	c.4885_4886insA	p.E1629fs	AAAGTAGAAAAAA	.	135	42	120	1	.	0	0	0	0	0
VPS18	57617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41195414	41195415	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS18-155	NM_020857	exon5	c.2797_2798insAG	p.K933fs	CAGCTCAAGGCTG	.	62	20	32	0	.	0	0	0	0	0
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65917184	65917185	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_004727	exon2	c.766_767insC	p.T256fs	GATAGCACCCCAA	.	181	52	158	0	.	0	0	0	0	0
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86287016	86287017	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP13-258	NM_006738	exon36	c.8364_8365insA	p.E2788fs	GAAGGAGAAAAAA	.	82	32	57	0	.	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	16	816959	816960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSLN-91	NM_013404	exon14	c.1472_1473insT	p.A491fs	GCCTTGCTTTCCA	.	269	125	212	1	.	0	0	0	0	0
C16orf88	400506	hgsc.bcm.edu	37	16	19725705	19725706	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C16orf88-68	NM_001012991	exon2	c.653_654insA	p.I218fs	TGGTGGATTTTTT	.	51	15	24	0	.	0	0	0	0	0
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT	rs113614842	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	CGCCGCCGCTGCT	.	165	0	80	0	-|0.500;GCC|0.250;GCT|0.250	0	0	0	0	0
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6361605	6361606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLPP-91	NM_006012	exon1	c.20_21insA	p.V7fs	TATTGGTAGGGGG	.	46	23	21	0	.	0	0	0	0	0
DHDH	27294	bcgsc.ca	37	19	49442849	49442850	+	Frame_Shift_Ins	INS	-	-	G	rs3830420		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHDH-90	NM_014475	exon4	c.510_511insG	p.A170fs	CCAGGCTGGGGGG	.	48	15	42	0	-|0.754;C|0.246	0	0	0	0	0
SCAF1	58506	broad.mit.edu	37	19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF1-68	NM_021228	exon9	c.3532_3533insC	p.T1178fs	GGTTCGACCCCCC	.	23	7	11	0	.	0	0	0	0	0
MAP4K3	8491	hgsc.bcm.edu;bcgsc.ca	37	2	39487811	39487812	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K3-550	NM_003618	exon29	c.2244_2245insT	p.F748fs	TTGGTTGAAGTCT	.	102	43	86	1	.	0	0	0	0	0
RBM43	375287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	152107742	152107743	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM43-90	NM_198557	exon4	c.752_753insGA	p.K251fs	TCCACTTTCTCCT	.	42	16	37	0	.	0	0	0	0	0
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	175264719	175264720	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCRN3-91	NM_024583	exon3	c.229_230insG	p.W77fs	TGGTTGTGGGGGG	.	80	33	70	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179434526	179434527	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon326	c.76333_76334insA	p.C25445fs	CATCACATTTTTC	.	55	28	56	1	.	0	0	0	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204032074	204032075	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.5901_5902insA	p.F1967fs	CAATTTCAAAAAA	.	40	14	44	0	.	0	0	0	0	0
PARD3B	117583	hgsc.bcm.edu;bcgsc.ca	37	2	206166297	206166298	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PARD3B-140	NM_205863	exon18	c.2502_2503insA	p.V834fs	GAAAGTCAAAAAA	.	205	81	186	0	.	0	0	0	0	0
CCDC108	255101	hgsc.bcm.edu;bcgsc.ca	37	2	219895931	219895932	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC108-94	NM_194302	exon8	c.912_913insA	p.K304fs	GGTCACCTTGATC	.	218	103	149	2	.	0	0	0	0	0
COPS8	10920	hgsc.bcm.edu;bcgsc.ca	37	2	238002796	238002797	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS8-228	NM_006710	exon5	c.395_396insT	p.D132fs	CCGATGATTTTGC	.	117	48	101	1	.	0	0	0	0	0
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35128865	35128866	+	In_Frame_Ins	INS	-	-	CTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLGAP4-94	NM_014902	exon9	c.2354_2355insCTA	p.S785delinsSY	CCTCCTCCAGCTC	.	218	40	82	0	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL18A1-90	NM_030582	exon31	c.3206_3207insC	p.G1069fs	AAGTGGGCCCCCC	.	113	37	82	0	.	0	0	0	0	0
BPIFC	254240	hgsc.bcm.edu	37	22	32831828	32831829	+	Frame_Shift_Ins	INS	-	-	G	rs199560755		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_174932	exon8	c.787_788insC	p.F263fs	GTGAGAAGGGGGG	.	81	15	59	2	-|0.995;G|0.005	0	0	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42099452	42099453	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEI1-70	NM_152513	exon2	c.292_293insT	p.L98fs	AGTGTGCTTTTTG	.	111	44	86	0	.	0	0	0	0	0
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD28-135	NM_001195098	exon10	c.445-2->C	.	TTACTCTGGGGGG	.	17	13	56	0	.	0	0	0	0	0
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52088242	52088243	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.666_667insA	p.D222fs	CTCTCGGTCCGAC	.	142	105	153	0	.	0	0	0	0	0
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52437564	52437565	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAP1-1032	NM_004656	exon13	c.1597_1598insT	p.G533fs	CCTCTCCAAAAAG	.	123	97	188	1	.	0	0	0	0	0
KALRN	8997	hgsc.bcm.edu;bcgsc.ca	37	3	124431854	124431855	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KALRN-738	NM_001024660	exon58	c.8148_8149insA	p.S2716fs	TGTTAGCAAAAAA	.	59	43	86	0	.	0	0	0	0	0
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu	37	4	56336953	56336954	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLOCK-515	NM_001267843	exon9	c.369_370insT	p.L123fs	GATTGCTAAAAAA	.	133	44	124	0	.	0	0	0	0	0
NNT	23530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	43619202	43619203	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NNT-92	NM_012343	exon5	c.668_669insA	p.G223fs	CTGCTGGAAAAGT	.	27	10	42	0	.	0	0	0	0	0
PAM	5066	hgsc.bcm.edu;bcgsc.ca	37	5	102340902	102340903	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAM-68	NM_001177306	exon17	c.1775_1776insT	p.Y592fs	GGAATTATTGGGT	.	351	114	270	1	.	0	0	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145524102	145524103	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARS-90	NM_020117	exon18	c.1590-2->C	.	AGTACCTGGGAGT	.	147	67	109	0	.	0	0	0	0	0
HIST1H2BE	8344	hgsc.bcm.edu;bcgsc.ca	37	6	26184051	26184052	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIST1H2BE-90	NM_003523	exon1	c.28_29insC	p.A10fs	GCTCCCGCCCCGA	.	244	95	197	2	.	0	0	0	0	0
RRP36	88745	bcgsc.ca	37	6	42995208	42995209	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RRP36-90	NM_033112	exon6	c.636_637insA	p.L212fs	CTTCCTGAAAAAA	.	336	142	271	3	.	0	0	0	0	0
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	47680311	47680312	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR115-160	NM_153838	exon5	c.519_520insT	p.D173fs	TACAGACTTGTCT	.	83	23	50	0	.	0	0	0	0	0
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	52615481	52615482	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSTA2-91	NM_000846	exon7	c.563_564insA	p.I188fs	TTACTGATTCTGG	.	76	35	86	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56481544	56481545	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_001723	exon24	c.6721_6722insA	p.G2241fs	GTTTACCTTTTTG	.	95	40	62	0	.	0	0	0	0	0
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112441533	112441534	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA4-140	NM_001105206	exon33	c.4618_4619insA	p.L1540fs	TCTTCAGTTTTTT	.	60	21	44	0	.	0	0	0	0	0
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu	37	7	6006678	6006679	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B-23	NM_173565	exon3	c.70_71insCT	p.D24fs	GATTATCAGAGAG	.	292	59	251	0	.	0	0	0	0	0
RSPH10B	222967	hgsc.bcm.edu	37	7	6797368	6797369	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B-23	NM_173565	exon3	c.60_61insTC	p.S20fs	TCCCTCATCTCTC	.	158	32	116	0	.	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;bcgsc.ca	37	7	51287561	51287562	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COBL-95	NM_015198	exon2	c.122_123insC	p.H41fs	CCATCGTGGGGGG	.	138	60	137	2	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	63	6	3	0	.	0	0	0	0	0
TPRN	286262	hgsc.bcm.edu	37	9	140087024	140087025	+	In_Frame_Ins	INS	-	-	TCC	rs77086130		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPRN-90	NM_001128228	exon2	c.1845_1846insGGA	p.E615delinsEE	TTCCTCTTCCTCC	.	91	0	82	0	.	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu;bcgsc.ca	37	X	135430724	135430725	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR112-183	NM_153834	exon6	c.4859_4860insA	p.S1620fs	CTACTTCAAAAAA	.	57	45	52	1	.	0	0	0	0	0
SLC6A9	6536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44466854	44466855	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC6A9-90	NM_201649	exon10	c.G1535C	p.G512A	GGGATGCCCAGCA	.	378	0	291	0	.	0	0	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu	37	16	87445172	87445173	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2743A	p.G915N	GGTGACCAGTGGC	.	120	18	138	0	.	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702805	48702806	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEX3C-659	NM_016626	exon2	c.G1895T	p.C632L	TTGGCACATTCCA	.	136	0	216	0	.	0	0	0	0	0
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10394800	10394801	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ICAM1-91	NM_000201	exon4	c.C730T	p.P244S	CTGTTCCCAGTCT	.	114	15	106	0	.	0	0	0	0	0
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734920	48734921	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD8-227	NM_001184900	exon5	c.T538A	p.Y180I	ACCTGTATCTGTT	.	64	0	52	0	.	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.V191I	GCAGACAGGCTTG	.	211	0	218	0	A|0.908;G|0.092	0	0	0	0	0