Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
IPP	3652	bcgsc.ca	37	1	46195375	46195375	+	Missense_Mutation	SNP	T	T	C	rs28375469	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	IPP-91	NM_001145349	exon4	c.A791G	p.K264R	GGAGATTTGCATA	.	57	4	114	0	T|0.709;C|0.291	2	2	0	0	0
FLG	2312	bcgsc.ca	37	1	152281479	152281479	+	Missense_Mutation	SNP	G	G	T	rs3126079	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	FLG-106	NM_002016	exon3	c.C5883A	p.H1961Q	GTCTTCGTGATGG	.	246	7	409	4	A|0.000;G|0.622;T|0.378	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	5	5	0	0	T|0.229;C|0.771	1	0	1	0	0
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	30740635	30740635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAP3K8-981	NM_001244134	exon5	c.G835A	p.E279K	ATGACCGAAGATG	.	79	7	95	0	.	2	2	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	49951215	49951229	+	In_Frame_Del	DEL	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	WDFY4-22	NM_020945	exon12	c.2081_2095del	p.694_699del	TGCACTGGGACCC	.	121	29	194	0	.	0	0	0	0	0
ZCCHC24	219654	hgsc.bcm.edu	37	10	81205023	81205023	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZCCHC24-153	NM_153367	exon1	c.C174T	p.G58G	GGGGCGGCCCTTG	.	18	12	3	0	.	6	6	0	0	0
KRTAP5-3	387266	bcgsc.ca	37	11	1628992	1628992	+	Silent	SNP	G	G	A	rs60210378		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KRTAP5-3-92	NM_001012708	exon1	c.C624T	p.G208G	CCCACAGCCTGAG	.	130	6	212	2	G|0.562;A|0.438	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	5	5	0	0	G|0.449;A|0.551	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574681	64574681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MEN1-3017	NM_130800	exon5	c.G809A	p.W270X	AGCAGCCAGAGCA	.	23	14	45	0	.	0	0	0	0	0
DNAJB13	374407	bcgsc.ca	37	11	73681135	73681135	+	Missense_Mutation	SNP	G	G	A	rs72982975	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	DNAJB13-90	NM_153614	exon8	c.G927A	p.M309I	GCAGATGCTGCGC	.	57	5	108	0	G|0.758;A|0.242	0	0	0	0	0
PHLDB1	23187	bcgsc.ca	37	11	118509668	118509668	+	Silent	SNP	A	A	G	rs483598	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PHLDB1-90	NM_001144758	exon11	c.A2595G	p.E865E	GCAGGAATCAGAA	.	127	5	194	0	A|0.454;G|0.546	24	24	0	0	0
HYLS1	219844	broad.mit.edu;bcgsc.ca	37	11	125770031	125770031	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HYLS1-91	NM_001134793	exon3	c.G768A	p.Q256Q	ACCTCAGCATATA	.	103	5	170	0	.	10	10	0	0	0
BHLHE41	79365	broad.mit.edu	37	12	26275863	26275863	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	BHLHE41-226	NM_030762	exon5	c.C585T	p.A195A	CCCGGCGGCCGAG	.	40	4	49	2	.	13	12	1	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52757872	52757872	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KRT85-91	NM_002283	exon4	c.C766T	p.L256L	GCCTCAGGAAGCT	.	157	26	194	0	.	0	0	0	0	0
CD63	967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56119366	56119366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CD63-90	NM_001257390	exon8	c.A696C	p.R232S	GCCACTTCTGATA	.	113	53	100	1	.	3231	1628	1601	1	1
USP15	9958	broad.mit.edu	37	12	62777929	62777929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	USP15-1084	NM_001252078	exon11	c.G1319T	p.G440V	TTCATGGCCTTTT	.	64	4	85	0	.	20	20	0	0	0
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123465730	123465730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARL6IP4-90	NM_018694	exon2	c.G413T	p.R138L	GCAGCCGGTCCCG	.	154	14	143	0	.	132	122	10	0	0
PXMP2	5827	hgsc.bcm.edu	37	12	133264332	133264332	+	Silent	SNP	C	C	T	rs11538534	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PXMP2-90	NM_018663	exon1	c.C76T	p.L26L	CAGTACCTGCTCT	.	9	5	0	0	C|0.572;T|0.428	5	5	0	0	0
VWA8	23078	broad.mit.edu	37	13	42189173	42189173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_015058	exon38	c.C4659A	p.H1553Q	CTTCCCGTGTTTG	.	93	3	93	0	.	21	21	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	2	0	C|0.372;T|0.628	5	2	3	0	0
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90450896	90450896	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TDP1-92	NM_018319	exon9	c.T921C	p.D307D	TGCTGATGGAACC	.	44	24	58	0	.	8	2	6	0	0
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42042367	42042367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MGA-522	NM_001164273	exon17	c.6562delG	p.G2188fs	TGTGTTGGAGCTT	.	41	31	76	0	.	0	0	0	0	0
MFAP1	4236	bcgsc.ca	37	15	44102010	44102010	+	Silent	SNP	A	A	C	rs2228368	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MFAP1-226	NM_005926	exon7	c.T990G	p.A330A	CTTAACAGCTTTG	.	109	5	197	2	T|0.304;G|0.088	21	21	0	0	0
GOLGA6A	342096	bcgsc.ca	37	15	74364639	74364639	+	Missense_Mutation	SNP	G	G	C	rs200350318		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GOLGA6A-44	NM_001038640	exon14	c.C1513G	p.Q505E	GATGTTGTCCTCC	.	32	6	88	1	G|0.999;C|0.001	0	0	0	0	0
E4F1	1877	broad.mit.edu	37	16	2282180	2282180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	E4F1-187	NM_004424	exon4	c.C424A	p.H142N	GGTGGGCACATCA	.	54	4	42	1	.	2	2	0	0	0
GLIS2	84662	broad.mit.edu	37	16	4386949	4386949	+	Silent	SNP	A	A	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GLIS2-90	NM_032575	exon6	c.A999C	p.P333P	GCGCCCACCCCCC	.	105	27	103	20	.	31	24	5	2	0
NUDT16L1	84309	hgsc.bcm.edu	37	16	4744169	4744169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NUDT16L1-90	NM_032349	exon2	c.G344T	p.R115L	ACGCGCGGCAGCT	.	29	4	6	0	.	37	37	0	0	0
USP31	57478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23119496	23119496	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	USP31-663	NM_020718	exon2	c.G642A	p.V214V	CTTTGACACAATA	.	116	52	126	2	.	0	0	0	0	0
ZNF843	283933	broad.mit.edu	37	16	31448010	31448010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNF843-68	NM_001136509	exon2	c.T161G	p.V54G	CTGTGGACCCGCC	.	45	8	55	11	.	1	1	0	0	0
CNEP1R1	255919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50063678	50063678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_153261	exon4	c.G191T	p.W64L	GTGCCTGGAACTG	.	105	14	97	0	.	14	14	0	0	0
CCL11	6356	broad.mit.edu;ucsc.edu	37	17	32614690	32614690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CCL11-90	NM_002986	exon3	c.C275A	p.S92Y	AAAAATCTCCAAC	.	47	9	106	2	.	0	0	0	0	0
NT5C	30833	hgsc.bcm.edu	37	17	73127683	73127683	+	Silent	SNP	T	T	C	rs4788867	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NT5C-90	NM_001252377	exon1	c.A120G	p.Q40Q	GCGGCGTTGCTCC	.	4	4	0	0	T|0.502;C|0.498	4	0	4	0	0
SEC14L1	6397	bcgsc.ca	37	17	75190962	75190962	+	Silent	SNP	C	C	T	rs674402	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SEC14L1-92	NM_001204408	exon9	c.C678T	p.S226S	CCCCAGCGCACCT	.	124	5	198	2	C|0.643;T|0.357	43	43	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31324560	31324560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ASXL3-49	NM_030632	exon12	c.C4748T	p.A1583V	AGCAGGCACGTGG	.	28	23	43	0	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	7	7	0	0	A|0.114;G|0.886	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	12	6	0	0	G|0.749;A|0.251	12	12	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	13	7	0	0	T|0.403;C|0.597	14	14	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	15	5	0	0	C|0.752;G|0.248	2	1	1	0	0
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6364521	6364521	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CLPP-91	NM_006012	exon4	c.G426A	p.P142P	CAACCCGATCTGC	.	186	12	138	0	.	144	140	4	0	0
MCOLN1	57192	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7589911	7589911	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MCOLN1-153	NM_020533	exon2	c.T96A	p.P32P	GGCCCCTCCGACA	.	67	26	71	1	.	79	49	28	2	0
MUC16	94025	bcgsc.ca	37	19	9075969	9075969	+	Missense_Mutation	SNP	C	C	T	rs2591593	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MUC16-566	NM_024690	exon3	c.G11477A	p.G3826E	ACCTGCCCTGGAT	.	260	8	224	2	C|0.750;T|0.250	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	10	7	0	0	C|0.734;A|0.266	30	5	25	0	0
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22171652	22171652	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNF208-7	NM_007153	exon2	c.G63A	p.L21L	AGTGTCCAGGCAT	.	189	22	154	0	.	28	28	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	5	0	0	T|0.072;C|0.928	1	1	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	5	0	0	A|0.065;C|0.935	1	1	0	0	0
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46857169	46857169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PPP5C-227	NM_006247	exon2	c.A286T	p.I96F	AAGTACATCAAGG	.	248	116	259	1	.	92	49	43	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	11	5	2	0	G|0.917;A|0.083	0	0	0	0	0
THSD7B	80731	bcgsc.ca	37	2	137917922	137917922	+	Missense_Mutation	SNP	T	T	A	rs4954474	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	THSD7B-75	.	.	.	.	TCATGATCCTCAG	.	137	7	231	0	T|0.686;A|0.314	2	2	0	0	0
SP140	11262	broad.mit.edu	37	2	231174695	231174695	+	Silent	SNP	C	C	T	rs186449912		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SP140-90	NM_007237	exon23	c.C2115T	p.C705C	CTGTTGCGACACT	.	193	5	381	0	C|0.999;T|0.001	11	11	0	0	0
PYGB	5834	bcgsc.ca	37	20	25276297	25276297	+	Silent	SNP	G	G	A	rs1130694	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PYGB-91	NM_002862	exon19	c.G2370A	p.Q790Q	GGACCAGCTGTAC	.	301	9	269	1	G|0.542;A|0.458	0	0	0	0	0
LIME1	54923	bcgsc.ca	37	20	62368925	62368925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	LIME1-44	NM_017806	exon2	c.C23T	p.A8V	CCTGGGCCCCTCC	.	200	175	172	3	.	16	0	16	0	0
KRTAP25-1	100131902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31661590	31661590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_001128598	exon1	c.C219A	p.F73L	AGGTTGGAAACTA	.	220	102	279	0	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46932128	46932128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	COL18A1-90	NM_030582	exon42	c.C4367T	p.S1456L	ATGGCTCGGACCC	.	565	47	448	0	.	287	278	9	0	0
TNRC6B	23112	broad.mit.edu;bcgsc.ca	37	22	40657974	40657974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TNRC6B-22	NM_001024843	exon7	c.G362A	p.R121H	CCGCCCGCTACAT	.	217	9	371	1	.	1	1	0	0	0
ZNF717	100131827	bcgsc.ca	37	3	75790860	75790860	+	Missense_Mutation	SNP	C	C	T	rs73117241		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	.	NM_001128223	exon3	c.G85A	p.V29M	AGTGCACAGCTAC	.	25	5	132	1	C|0.500;T|0.500	13	13	0	0	0
ARHGEF26	26084	bcgsc.ca	37	3	153839960	153839960	+	Missense_Mutation	SNP	T	T	C	rs12497267	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARHGEF26-47	NM_001251962	exon2	c.T179C	p.L60P	CGCTCCTCGCAGC	.	210	6	406	8	T|0.139;C|0.861	1	1	0	0	0
PLCH1	23007	broad.mit.edu	37	3	155199167	155199167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PLCH1-151	NM_001130960	exon23	c.T4672A	p.C1558S	CTTGGCAGTTGTC	.	72	3	134	0	.	0	0	0	0	0
KNG1	3827	broad.mit.edu;bcgsc.ca	37	3	186460034	186460034	+	Missense_Mutation	SNP	C	C	T	rs201737072		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KNG1-92	NM_001102416	exon10	c.C1849T	p.R617C	CCTGGACGCCCCT	.	51	5	91	0	C|0.999;T|0.000	0	0	0	0	0
HTT	3064	broad.mit.edu	37	4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs10618869	alternate_allele	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HTT-281	NM_002111	exon1	c.52_57del	p.18_19del	TCCTTCCAGCAGC	.	16	5	9	0	.	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	12	8	0	0	G|0.970;T|0.030	0	0	0	0	0
MAB21L2	10586	broad.mit.edu;bcgsc.ca	37	4	151504413	151504413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAB21L2-91	NM_006439	exon1	c.C232T	p.L78F	GTGGTGCTCTACC	.	142	6	180	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	8	8	0	0	C|0.454;G|0.546	4	0	4	0	0
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140307778	140307778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PCDHAC1-28	NM_031882	exon1	c.C1301T	p.S434L	CTGTGTCAGTTGC	.	108	49	110	0	.	1	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482501	156482501	+	Silent	SNP	T	T	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HAVCR1-92	NM_001099414	exon3	c.A90C	p.P30P	GACAGATGGACCT	.	234	8	254	4	.	0	0	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	AGXT2L2-91	NM_153373	exon1	c.G33C	p.T11T	GGCCAGCGTGTCG	.	6	4	0	0	C|0.854;G|0.146	14	6	8	0	0
EEF1A1	1915	ucsc.edu;bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	EEF1A1-226	NM_001402	exon7	c.T1077G	p.P359P	CAATACAGGGGCA	.	134	14	208	4	C|1.000;|0.000	14240	14226	4	6	4
FOXO3	2309	bcgsc.ca	37	6	108985092	108985092	+	Silent	SNP	C	C	G	rs200866771		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	FOXO3-1295	NM_001455	exon2	c.C1056G	p.A352A	CTCAGCCAGCCTG	.	223	21	344	5	C|0.999;G|0.001	11	10	1	0	0
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	147830225	147830225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SAMD5-68	NM_001030060	exon1	c.G161A	p.R54H	GCCGCCGTATCCT	.	40	7	59	0	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	4	4	0	0	G|0.492;C|0.508	0	0	0	0	0
TWISTNB	221830	hgsc.bcm.edu	37	7	19748560	19748582	+	Frame_Shift_Del	DEL	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.58_80del	p.20_27del	AGGCAAGGCAGGA	.	74	0	106	0	.	0	0	0	0	0
TWISTNB	221830	bcgsc.ca	37	7	19748562	19748582	+	In_Frame_Del	DEL	CAGGACGCCAGCCTGCCCTAC	CAGGACGCCAGCCTGCCCTAC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	CAGGACGCCAGCCTGCCCTAC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.58_78del	p.20_26del	GCAAGGCAGGACG	.	72	4	104	0	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	64	15	39	0	.	0	0	0	0	0
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780431	37780431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GPR141-93	NM_181791	exon1	c.A436T	p.I146F	ATTGTCATTGTGG	.	161	61	199	0	.	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	9	9	6	0	G|0.760;A|0.240	19	9	10	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61769317	61769317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CHD7-141	NM_017780	exon34	c.C7478G	p.P2493R	GCACACCCACAAG	.	224	125	229	0	.	0	0	0	0	0
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143427201	143427201	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TSNARE1-90	NM_145003	exon3	c.G141T	p.S47S	CTCTGGCGACGGG	.	145	57	147	0	.	12	6	6	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	27	0	27	0	0
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19786455	19786455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SLC24A2-517	NM_001193288	exon1	c.T410C	p.L137P	ACATGCAGAATGA	.	53	9	55	0	.	0	0	0	0	0
CCDC107	203260	bcgsc.ca	37	9	35660990	35660990	+	Missense_Mutation	SNP	A	A	G	rs1339374	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CCDC107-90	NM_174923	exon5	c.A658G	p.I220V	GAGGAGATTGGTG	.	128	5	138	1	A|0.226;G|0.774	215	215	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	BICD2-226	NM_001003800	exon1	c.C50A	p.A17E	GGCTGCGCCTCCA	.	61	12	37	3	.	20	19	1	0	0
TBL1X	6907	broad.mit.edu;bcgsc.ca	37	X	9656265	9656265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TBL1X-131	NM_001139466	exon7	c.A566G	p.K189R	CATCGAAGAACAG	.	281	8	374	1	.	2	2	0	0	0
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101395946	101395946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCEAL6-91	NM_001006938	exon3	c.G358A	p.D120N	GGGAATCGTCCGT	.	170	39	307	0	.	94	94	0	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864350	102864350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCEAL3-90	NM_001006933	exon3	c.G358A	p.D120N	ACGGACGATTCCC	.	292	10	476	0	.	94	94	0	0	0
IRS4	8471	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979158	107979158	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	IRS4-623	NM_003604	exon1	c.C417A	p.P139P	GAGCGGGGGGATC	.	47	17	99	0	.	0	0	0	0	0
NDUFA1	4694	broad.mit.edu	37	X	119007288	119007288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NDUFA1-193	NM_004541	exon2	c.G124T	p.G42W	CATTTTGGGTATC	.	99	4	170	0	.	627	627	0	0	0
MAGEA3	4102	bcgsc.ca	37	X	151935712	151935712	+	Missense_Mutation	SNP	C	C	A	rs61744011	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAGEA3-90	NM_005362	exon3	c.G455T	p.S152I	GCTTTGCTGAAGA	.	378	28	674	17	C|0.995;A|0.005	0	0	0	0	0
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	EP400-520	NM_015409	exon47	c.8181_8182insCAGCAGCAG	p.Q2727delinsQQQQ	GCAACAACAGCAG	.	184	40	206	0	.	0	0	0	0	0
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	7	19748559	19748560	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.81_82insA	p.P27fs	TAGGCAAGGCAGG	.	74	12	106	0	.	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29444479	29444480	+	Splice_Site	DNP	GG	GG	TT	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNRF3-69	NM_001206998	exon7	c.1015+1G>T	.	TCATAGGTAACTG	.	112	40	217	0	.	0	0	0	0	0