Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GPR153	387509	broad.mit.edu	37	1	6310588	6310588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	GPR153-514	NM_207370	exon5	c.C1076A	p.A359D	TACTTGGCCATCC	.	169	6	266	0	.	0	0	0	0	0
UBE4B	10277	broad.mit.edu	37	1	10166330	10166330	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	UBE4B-229	NM_001105562	exon7	c.A885C	p.S295S	TGCCTCACCTTCC	.	95	6	147	11	.	0	0	0	0	0
ATP13A2	23400	bcgsc.ca	37	1	17319011	17319011	+	Silent	SNP	G	G	A	rs2076603	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ATP13A2-93	NM_022089	exon17	c.C1815T	p.P605P	AAGTGGGGGTCTC	.	111	7	219	2	T|0.129;G|0.314;C|0.153;A|0.404	1	1	0	0	0
EPHA8	2046	bcgsc.ca	37	1	22902772	22902772	+	Silent	SNP	C	C	T	rs56218493	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	EPHA8-1380	NM_020526	exon3	c.C222T	p.N74N	TTGCAACGTCATG	.	291	8	464	2	C|0.911;T|0.089	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	7	6	0	0	G|0.680;C|0.320	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	4	0	4	0	0
LCE1E	353135	bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	50	40	142	8	A|0.995;G|0.005	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	IBA57-90	NM_001010867	exon2	c.C390A	p.S130R	TGACAGCTCGGTG	.	67	11	63	1	.	2	2	0	0	0
ERO1LB	56605	bcgsc.ca	37	1	236385276	236385276	+	Missense_Mutation	SNP	C	C	T	rs116000191	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ERO1LB-90	NM_019891	exon14	c.G1157A	p.R386H	ATTATACGGGAGA	.	191	8	218	0	C|0.996;T|0.004	6	6	0	0	0
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247694861	247694861	+	Missense_Mutation	SNP	G	G	A	rs147306837	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OR2C3-70	NM_198074	exon2	c.C953T	p.A318V	ATTTGCGCCAGCT	.	93	86	152	1	G|1.000;T|0.000	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu	37	10	17087956	17087956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CUBN-166	NM_001081	exon24	c.C3467A	p.A1156D	CAGTAAGCTGAGA	.	94	5	95	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	9	9	0	0	A|0.009;G|0.991	5	0	5	0	0
SMC3	9126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112357947	112357947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SMC3-92	NM_005445	exon20	c.A2167G	p.T723A	ATCGAGACCCAGC	.	73	19	71	1	.	12	9	3	0	0
RASSF7	8045	bcgsc.ca	37	11	562421	562421	+	Missense_Mutation	SNP	G	G	A	rs2242182	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	RASSF7-91	NM_001143994	exon3	c.G467A	p.R156Q	ACCTGCGGGGCCT	.	91	5	112	0	G|0.923;A|0.077	4	4	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_001012709	exon1	c.C69T	p.G23G	GCCACAGCCCCCA	.	166	15	176	2	.	0	0	0	0	0
SYT13	57586	broad.mit.edu	37	11	45274076	45274076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SYT13-91	NM_020826	exon4	c.C742A	p.R248S	AGAAGCGGTCGCA	.	109	4	155	0	.	0	0	0	0	0
DTX4	23220	broad.mit.edu	37	11	58949674	58949674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DTX4-501	NM_015177	exon2	c.G674T	p.G225V	CTCCTGGAGTGGT	.	51	3	71	0	.	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64374949	64374949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NRXN2-232	NM_015080	exon23	c.C4858T	p.R1620W	GGCCCCGCTCCCC	.	26	26	2	0	.	3	1	2	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64577330	64577333	+	Frame_Shift_Del	DEL	AGAC	AGAC	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGAC	AGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	MEN1-3017	NM_130800	exon2	c.249_252del	p.83_84del	GATGATAGACAGG	.	81	67	167	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	6	6	0	0	G|0.005;C|0.995	39	0	39	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	14	14	0	0	C|0.921;T|0.079	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	5	5	0	0	C|0.233;T|0.767	0	0	0	0	0
KRTAP5-8	57830	ucsc.edu	37	11	71249125	71249125	+	Silent	SNP	A	A	G	rs113379698		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP5-8-44	NM_021046	exon1	c.A24G	p.G8G	CTCTGGAGGCTGT	.	118	14	258	5	A|0.500;G|0.500	0	0	0	0	0
KRTAP5-8	57830	ucsc.edu	37	11	71249152	71249152	+	Silent	SNP	C	C	T	rs112809261	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP5-8-44	NM_021046	exon1	c.C51T	p.C17C	GGGCTGCGGCTCT	.	101	34	189	2	C|0.896;T|0.104	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108142086	108142098	+	Frame_Shift_Del	DEL	CACAAGGGATGCT	CACAAGGGATGCT	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	CACAAGGGATGCT	CACAAGGGATGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ATM-3419	NM_000051	exon20	c.3030_3042del	p.1010_1014del	TGAGAACACAAGG	.	35	25	156	0	.	0	0	0	0	0
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113631587	113631587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZW10-228	NM_004724	exon3	c.G294T	p.Q98H	TTCCAACTGCTGC	.	89	81	153	0	.	2	0	2	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	387	17	312	18	G|0.998;A|0.002	920	779	139	0	1
C1QL4	338761	broad.mit.edu	37	12	49729895	49729895	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	C1QL4-90	NM_001008223	exon1	c.T366G	p.G122G	CTCGTAACCCTCG	.	147	19	97	4	.	0	0	0	0	0
HOXC9	3225	hgsc.bcm.edu	37	12	54394337	54394337	+	Missense_Mutation	SNP	C	C	T	rs11829948	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	HOXC9-155	NM_006897	exon1	c.C365T	p.A122V	CGGACGCCTACCC	.	9	6	0	0	C|0.980;T|0.020	0	0	0	0	0
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85449577	85449577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRRIQ1-95	NM_001079910	exon8	c.C1006T	p.R336X	GAAAATCGAAAAA	.	146	75	102	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	16	11	0	0	C|0.752;T|0.248	0	0	0	0	0
TMEM119	338773	broad.mit.edu;mdanderson.org	37	12	108985995	108985995	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TMEM119-69	NM_181724	exon2	c.G165A	p.P55P	GGGTGGCGGGAGG	.	75	17	37	0	.	0	0	0	0	0
CLN5	1203	hgsc.bcm.edu	37	13	77566320	77566320	+	Silent	SNP	C	C	G	rs138037471	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CLN5-91	NM_006493	exon1	c.C234G	p.A78A	CTGGGCCCTGGCG	.	9	8	1	0	C|0.985;G|0.015	3	0	3	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	8	8	0	0	C|0.569;G|0.431	1	0	1	0	0
HHIPL1	84439	bcgsc.ca;mdanderson.org	37	14	100141747	100141747	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	HHIPL1-70	NM_001127258	exon9	c.C2133T	p.V711V	CGCCGTCGTGTGT	.	53	53	9	1	.	0	0	0	0	0
DYX1C1	161582	broad.mit.edu	37	15	55759242	55759242	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DYX1C1-91	NM_001033560	exon5	c.523delA	p.I175fs	TCTGAATTTTTTT	.	6	2	8	0	.	0	0	0	0	0
LRRK1	79705	broad.mit.edu	37	15	101606029	101606029	+	Missense_Mutation	SNP	C	C	A	rs34876840	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRRK1-602	NM_024652	exon32	c.C5387A	p.P1796H	CGGAACCCCCGGC	.	47	4	86	0	C|0.996;A|0.004	0	0	0	0	0
SIAH1	6477	broad.mit.edu	37	16	48396114	48396114	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SIAH1-415	NM_001006610	exon2	c.C319A	p.R107R	GGCCCCGGCAAGT	.	104	4	106	0	.	21	21	0	0	0
HEATR3	55027	bcgsc.ca	37	16	50112894	50112894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	HEATR3-92	NM_182922	exon7	c.G1006T	p.V336F	AGAAGAGTCAGAA	.	71	4	57	0	.	3	3	0	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.A339G	p.Q113Q	GCAGCAACAGCAG	.	31	5	13	0	.	18	7	11	0	0
THAP11	57215	hgsc.bcm.edu;ucsc.edu	37	16	67876805	67876805	+	Silent	SNP	A	A	G	rs28434205	bycluster;byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.A348G	p.Q116Q	GCAGCAACAGCAG	.	30	12	16	0	A|0.991;G|0.009	41	5	36	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876814	67876814	+	Silent	SNP	G	G	A	rs143185886	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	THAP11-90	NM_020457	exon1	c.G357A	p.Q119Q	GCAGCAGCAGCAG	.	27	6	18	0	G|0.997;A|0.003	13	13	0	0	0
IST1	9798	ucsc.edu	37	16	71956517	71956517	+	Silent	SNP	C	C	A	rs78045037	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_001270976	exon8	c.C732A	p.P244P	AATGCCCATGCCC	.	83	21	77	3	C|0.984;A|0.016	0	0	0	0	0
IST1	9798	ucsc.edu	37	16	71956529	71956529	+	Silent	SNP	C	C	T	rs28701631	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_001270976	exon8	c.C744T	p.P248P	CATGCCCATGCCT	.	75	15	76	0	C|0.988;T|0.012	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	27	0	3	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	8	8	0	0	A|0.188;G|0.812	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	415	35	357	25	.	19	0	19	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_001130677	exon1	c.C290T	p.P97L	ACGCCGGGCCGCC	.	7	7	0	0	G|0.750;A|0.250	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	132	19	67	0	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	130	10	66	0	.	0	0	0	0	0
TTC25	83538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40093013	40093013	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TTC25-23	NM_031421	exon5	c.460-2A>G	.	TTTCTCAGAATAT	.	85	38	79	0	.	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	18	18	0	0	A|0.476;G|0.524	2	0	2	0	0
SMG8	55181	ucsc.edu	37	17	57289754	57289754	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SMG8-93	NM_018149	exon2	c.A1812G	p.R604R	TAGCCGAGCTCGA	.	58	1	43	0	.	3	3	0	0	0
BPTF	2186	ucsc.edu;bcgsc.ca	37	17	65822317	65822317	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	BPTF-94	NM_004459	exon1	c.G477A	p.E159E	TTCTGAGGACGAC	.	450	221	546	2	.	0	0	0	0	0
CDC42EP4	23580	ucsc.edu;bcgsc.ca	37	17	71282046	71282046	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CDC42EP4-90	NM_012121	exon2	c.C594T	p.Y198Y	CAGCCCGTACGTG	.	193	85	200	2	.	6	5	1	0	0
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73282384	73282384	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SLC25A19-91	NM_021734	exon5	c.288+1G>A	.	CACCTACTTGGAC	.	113	19	93	0	.	0	0	0	0	0
CEP192	55125	broad.mit.edu	37	18	13048939	13048939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CEP192-27	NM_032142	exon16	c.A2149G	p.T717A	ATCAGCACCATTG	.	90	4	173	2	.	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	917526	917526	+	Silent	SNP	A	A	G	rs10407968	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KISS1R-91	NM_032551	exon1	c.A24G	p.G8G	GTCCGGACCCAAC	.	7	5	2	0	A|0.821;G|0.179	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	10	10	0	0	A|0.114;G|0.886	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	152	14	22	0	.	17	17	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CACNA1A-67	NM_001127221	exon19	c.G2754C	p.E918D	CTCGCCCTCCCAG	.	8	7	0	0	C|0.363;G|0.637	0	0	0	0	0
TECR	9524	broad.mit.edu	37	19	14674673	14674673	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TECR-90	NM_138501	exon5	c.A225C	p.T75T	GGCCACACTGTAC	.	129	4	124	0	.	636	634	2	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	40	12	1	0	C|0.883;G|0.117	6	3	3	0	0
KCNN1	3780	hgsc.bcm.edu	37	19	18084724	18084724	+	Silent	SNP	C	C	T	rs77030907	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KCNN1-22	NM_002248	exon3	c.C27T	p.S9S	TGGCAGCGTGGGG	.	51	28	2	0	C|0.990;T|0.010	0	0	0	0	0
KCNN1	3780	hgsc.bcm.edu	37	19	18084775	18084775	+	Silent	SNP	G	G	A	rs75754669	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KCNN1-22	NM_002248	exon3	c.G78A	p.P26P	CCCTCCGGACCCT	.	34	23	2	0	G|0.990;A|0.010	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	19	5	0	0	T|0.545;C|0.455	1	0	1	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	25	16	4	0	C|0.254;G|0.746	0	0	0	0	0
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56296996	56296996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NLRP11-169	NM_145007	exon12	c.C3097A	p.L1033I	ATCAAAGGGGTTG	.	369	170	318	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	232	1	178	0	.	5	2	3	0	0
ZNF324	25799	broad.mit.edu	37	19	58983240	58983240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZNF324-90	NM_014347	exon4	c.G1381T	p.A461S	GGCAAGGCCTTCG	.	256	15	29	1	.	1	1	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ARHGEF33-46	NM_001145451	exon14	c.A2073G	p.K691K	CTACAAACTGGAG	.	6	6	0	0	A|0.086;G|0.914	1	0	1	0	0
EGR4	1961	hgsc.bcm.edu	37	2	73518964	73518964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	EGR4-90	NM_001965	exon2	c.G1391A	p.R464H	CCGCGGCGCCCCT	.	9	8	1	0	.	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	9	9	0	0	A|0.029;G|0.971	1	0	1	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116497402	116497402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DPP10-142	NM_001178034	exon9	c.C797A	p.P266H	TGGTACCCACCAT	.	235	20	419	0	.	0	0	0	0	0
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118582643	118582643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DDX18-290	NM_006773	exon9	c.T1334C	p.L445P	AGTTGCTGAACTA	.	147	57	202	0	.	6	3	3	0	0
SCN7A	6332	broad.mit.edu	37	2	167289175	167289175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SCN7A-67	NM_002976	exon15	c.C2245A	p.Q749K	CAAGCTGGAGATT	.	50	4	60	0	.	0	0	0	0	0
MAP2	4133	bcgsc.ca	37	2	210558162	210558162	+	Missense_Mutation	SNP	G	G	A	rs741006	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	MAP2-591	NM_002374	exon7	c.G1268A	p.R423K	AGCAAAGGGATAC	.	129	5	225	0	G|0.850;A|0.150	0	0	0	0	0
IRS1	3667	broad.mit.edu	37	2	227659840	227659840	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	IRS1-1272	NM_005544	exon1	c.A3615C	p.P1205P	AGGGGGTGGGGGT	.	21	6	29	6	.	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	9	6	0	0	C|0.751;T|0.249	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	7	7	0	0	G|0.122;C|0.878	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	.	.	.	.	CCATCGCGGCCAC	.	118	5	47	0	.	0	0	0	0	0
C20orf166-AS1	253868	broad.mit.edu;bcgsc.ca	37	20	61143819	61143819	+	RNA	SNP	G	G	A	rs111651569	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	.	.	.	.	TCGTGCGCGAGGT	.	137	7	132	0	G|0.500;A|0.500	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	44	7	29	0	A|0.979;G|0.021	189	165	24	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	26	7	2	0	.	150	149	1	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	28	7	2	0	.	155	155	0	0	0
KCNJ15	3772	bcgsc.ca	37	21	39671447	39671447	+	Missense_Mutation	SNP	C	C	T	rs3746876	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KCNJ15-157	NM_002243	exon4	c.A264T	p.K88N	TGCCATCGCGTTT	.	67	4	153	1	C|0.960;G|0.001	0	0	0	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47836750	47836750	+	Silent	SNP	T	T	C	rs61738290	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PCNT-141	NM_006031	exon30	c.T6918C	p.A2306A	GACGGCTGTGGTA	.	6	6	3	0	T|0.969;C|0.031	0	0	0	0	0
PRSS50	29122	hgsc.bcm.edu	37	3	46759293	46759293	+	Missense_Mutation	SNP	C	C	T	rs143548046	by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PRSS50-90	NM_013270	exon1	c.G22A	p.V8I	GCGCGACGGTCTG	.	21	18	0	0	C|0.995;T|0.005	0	0	0	0	0
WDR6	11180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49050657	49050657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	WDR6-90	NM_018031	exon2	c.C1780A	p.P594T	ACCCTGCCCTCTC	.	89	57	132	0	.	116	26	90	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	8	0	0	G|0.252;C|0.748	0	0	0	0	0
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78680354	78680354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ROBO1-67	NM_002941	exon25	c.C3583G	p.P1195A	TGTGTGGAGGAGG	.	144	38	206	2	.	2	2	0	0	0
DCBLD2	131566	broad.mit.edu	37	3	98600400	98600400	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DCBLD2-92	NM_080927	exon2	c.C417A	p.V139V	TCTGCTGACTCCA	.	108	3	78	0	.	0	0	0	0	0
ZBTB20	26137	broad.mit.edu	37	3	114057884	114057884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ZBTB20-95	NM_001164342	exon5	c.G2194T	p.D732Y	TGTGGTCGTTGAA	.	142	5	112	0	.	0	0	0	0	0
LRRC33	375387	ucsc.edu;bcgsc.ca	37	3	196387312	196387312	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	LRRC33-92	NM_198565	exon3	c.G798T	p.P266P	CTTCCCGCTGCTG	.	156	99	230	2	.	0	0	0	0	0
UVSSA	57654	broad.mit.edu;bcgsc.ca	37	4	1373985	1373985	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_020894	exon11	c.C1719T	p.D573D	GCCAGACGGCCGG	.	299	12	156	0	.	16	16	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	45	26	0	0	C|0.960;G|0.040	16	5	11	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	90	7	13	0	.	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	6	5	0	0	G|0.794;C|0.206	1	0	1	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	FRG1-90	NM_004477	exon6	c.G506A	p.S169N	CAAAAAGTAAAAC	.	700	18	910	17	G|0.500;A|0.500	54	54	0	0	0
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PAPD7-69	NM_006999	exon13	c.1584_1585del	p.528_529del	GAAAAAACACACA	.	167	7	121	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	9	8	0	0	G|0.980;C|0.020	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	9	8	1	0	G|0.585;C|0.415	0	0	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	AGXT2L2-91	NM_153373	exon1	c.G33C	p.T11T	GGCCAGCGTGTCG	.	10	10	0	0	C|0.854;G|0.146	6	0	6	0	0
COL23A1	91522	broad.mit.edu	37	5	177690210	177690210	+	Missense_Mutation	SNP	G	G	T	rs112924647	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	COL23A1-91	NM_173465	exon9	c.C638A	p.A213E	CTTACCGCTGGGC	.	119	5	82	0	G|0.500;A|0.500	0	0	0	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33419613	33419615	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SYNGAP1-48	NM_006772	exon19	c.3962_3964del	p.1321_1322del	CCCCCCCAGCCCC	.	6	1	12	0	.	0	0	0	0	0
C6orf222	389384	broad.mit.edu	37	6	36297915	36297915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	C6orf222-93	NM_001010903	exon2	c.T553G	p.S185A	CCTTGGACAACCC	.	47	3	93	0	.	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	14	14	0	0	T|0.441;C|0.559	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	14	13	1	0	C|0.673;A|0.327	4	0	4	0	0
FIG4	9896	ucsc.edu;bcgsc.ca	37	6	110064928	110064928	+	Missense_Mutation	SNP	A	A	T	rs2295837	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	FIG4-69	NM_014845	exon10	c.A1090T	p.M364L	GACCAGATGTTCC	.	46	5	55	0	A|0.937;T|0.063	3	3	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	8	8	1	0	C|0.329;G|0.671	1	0	1	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	8	8	1	0	G|0.907;A|0.093	0	0	0	0	0
JPH1	56704	broad.mit.edu	37	8	75233186	75233186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	JPH1-91	NM_020647	exon1	c.G337A	p.G113R	GCAGCCCGTTACT	.	131	4	196	0	.	0	0	0	0	0
TMEM67	91147	broad.mit.edu	37	8	94809628	94809628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TMEM67-92	NM_153704	exon20	c.G2030T	p.W677L	ATGAATGGAATGA	.	79	4	133	0	.	1	1	0	0	0
RNF139	11236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	125498340	125498340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	RNF139-226	NM_007218	exon2	c.C450G	p.I150M	TTCCATCTATTCA	.	106	6	249	0	.	4	4	0	0	0
TSNARE1	203062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	143396409	143396409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	TSNARE1-90	NM_145003	exon8	c.A1029C	p.K343N	CTGGGTTTTCAGC	.	150	134	294	2	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	12	12	2	0	A|0.738;G|0.262	11	0	11	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	12	12	0	0	C|0.707;T|0.293	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	10	10	0	0	G|0.246;A|0.754	4	0	4	0	0
CDKN2B	1030	bcgsc.ca;mdanderson.org	37	9	22009141	22009141	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	CDKN2B-792	.	.	.	.	GCCGGTCGTTAGC	.	111	58	86	2	.	3	3	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	BICD2-226	NM_001003800	exon1	c.C50A	p.A17E	GGCTGCGCCTCCA	.	81	16	18	1	.	0	0	0	0	0
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936830	124936830	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	MORN5-90	NM_198469	exon4	c.C363G	p.Y121X	CTATTACGATTGT	.	146	31	112	0	.	7	7	0	0	0
NAIF1	203245	broad.mit.edu	37	9	130828964	130828964	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	NAIF1-68	NM_197956	exon1	c.C417A	p.A139A	GATGGTGGCCTCG	.	130	5	106	0	.	4	4	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	5	5	0	0	A|0.006;C|0.994	0	0	0	0	0
SAPCD2	89958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139959388	139959388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_178448	exon5	c.C983T	p.T328M	GTGGACGTCAGGG	.	92	42	39	0	.	7	5	2	0	0
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24844592	24844592	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	POLA1-229	NM_016937	exon32	c.C3592T	p.L1198L	GAGCAGCTGCAGA	.	88	79	96	0	.	2	0	2	0	0
ATRX	546	broad.mit.edu	37	X	76856021	76856021	+	Missense_Mutation	SNP	T	T	C	rs45439799	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	ATRX-248	NM_000489	exon23	c.A5579G	p.N1860S	TCACTATTATTGC	.	84	4	68	0	T|0.730;0|0.006	0	0	0	0	0
DIAPH2	1730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	96603202	96603202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	DIAPH2-133	NM_007309	exon24	c.T2932C	p.Y978H	GGAGAATACTTCA	.	169	166	127	2	.	5	0	5	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	CTGTGGAGGCTGT	.	58	32	31	0	.	0	0	0	0	0
PGAP2	27315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3846588	3846589	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	PGAP2-90	NM_001256236	exon8	c.1019_1020insT	p.T340fs	AGTACACTGTTGT	.	154	143	241	0	.	0	0	0	0	0
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46328052	46328053	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	SCAF11-93	NM_004719	exon8	c.539_540insT	p.W180fs	GTACTCCAATTTG	.	96	38	92	0	.	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	.	NM_015077	exon2	c.313_314insC	p.A105fs	GCTGCTGCGGCCG	.	12	12	0	0	-|0.009;C|0.991	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	153	10	90	0	.	0	0	0	0	0