Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ANKRD65	441869	broad.mit.edu	37	1	1354515	1354515	+	Missense_Mutation	SNP	C	C	G	rs904589		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001145210	exon4	c.G1165C	p.E389Q	CCTTCTCCCCCCC	.	149	5	107	0	C|0.285;G|0.715	1	1	0	0	0
ANKRD65	441869	broad.mit.edu	37	1	1354570	1354570	+	Silent	SNP	C	C	T	rs191154418	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001145210	exon4	c.G1110A	p.V370V	CTGGGCCACCTCG	.	131	4	32	0	C|0.997;T|0.003	1	1	0	0	0
PRDM16	63976	hgsc.bcm.edu	37	1	3329229	3329229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRDM16-660	NM_022114	exon9	c.G2468C	p.R823P	AGCCCCGCAAGAA	.	21	18	0	0	.	0	0	0	0	0
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRAMEF4-45	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA	.	24	11	62	5	A|0.500;C|0.500	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	14	14	0	0	G|0.061;T|0.939	0	0	0	0	0
GNL2	29889	broad.mit.edu	37	1	38048389	38048389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GNL2-91	NM_013285	exon7	c.C785A	p.T262N	GCCCAGGTTGGAA	.	38	3	58	0	.	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42047867	42047867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HIVEP3-157	NM_024503	exon4	c.G2602T	p.D868Y	CTGTGTCCGGCCG	.	69	10	68	0	.	0	0	0	0	0
MAST2	23139	bcgsc.ca	37	1	46476587	46476587	+	Missense_Mutation	SNP	T	T	G	rs11211247	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MAST2-581	NM_015112	exon10	c.T1164G	p.D388E	TCAAGATAATTTG	.	69	4	62	0	T|0.153;G|0.847	3	3	0	0	0
MKNK1	8569	broad.mit.edu	37	1	47028362	47028362	+	Missense_Mutation	SNP	C	C	T	rs55791614	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MKNK1-978	NM_003684	exon11	c.G922A	p.D308N	CACAGTCGGCCCC	.	212	5	129	1	C|0.996;T|0.004	6	6	0	0	0
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SSBP3-90	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT	.	77	8	22	0	.	11	11	0	0	0
TCHH	7062	broad.mit.edu	37	1	152084234	152084234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TCHH-72	NM_007113	exon3	c.C1459A	p.R487S	GCCAACGTTCGCG	.	87	3	29	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	16	16	0	0	T|0.229;C|0.771	3	0	3	0	0
CR1	1378	bcgsc.ca	37	1	207787796	207787796	+	Missense_Mutation	SNP	T	T	C	rs61822976		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CR1-93	NM_000651	exon40	c.T6623C	p.M2208T	CTGGAATGAAAGC	.	355	31	266	7	.	1	1	0	0	0
NSL1	25936	broad.mit.edu	37	1	212965096	212965096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	NSL1-91	NM_015471	exon1	c.T10G	p.S4A	CAGGAGACCCCGC	.	85	16	37	8	.	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	11	11	0	0	G|0.002;A|0.998	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	74	69	0	0	G|0.841;A|0.159	0	0	0	0	0
TARBP1	6894	hgsc.bcm.edu	37	1	234601455	234601456	+	Splice_Site	DEL	CT	CT	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TARBP1-93	.	.	.	.	AATAAACTAAAAA	.	61	0	45	0	.	0	0	0	0	0
KIF26B	55083	hgsc.bcm.edu	37	1	245851609	245851609	+	Missense_Mutation	SNP	C	C	G	rs150834033	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KIF26B-25	NM_018012	exon12	c.C5324G	p.P1775R	CGCCCCCCGGTGG	.	35	32	0	0	C|0.982;G|0.018	1	0	1	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	6	6	0	0	C|0.154;G|0.846	1	0	1	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	41	14	1	0	C|0.339;G|0.661	2	0	2	0	0
PPRC1	23082	hgsc.bcm.edu	37	10	103892888	103892888	+	Silent	SNP	G	G	T	rs34756593	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PPRC1-227	NM_015062	exon1	c.G63T	p.P21P	CGGTCCGGACCCT	.	54	22	0	0	G|0.986;T|0.014	2	0	2	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	21	20	0	0	A|0.009;G|0.991	12	0	12	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	17	9	0	0	T|0.623;G|0.377	1	1	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	117	15	8	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	113	13	7	0	.	0	0	0	0	0
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643216	1643216	+	Silent	SNP	C	C	T	rs184923323	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001012709	exon1	c.G108A	p.G36G	ACAGCCCCCACAG	.	150	8	19	0	C|0.983;T|0.017	0	0	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001012709	exon1	c.C69T	p.G23G	GCCACAGCCCCCA	.	234	10	54	0	.	0	0	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001012709	exon1	c.G66A	p.G22G	ACAGCCCCCACAG	.	253	14	74	3	.	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	5	5	0	0	G|0.581;A|0.419	27	2	25	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	147	0	147	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FAM86C1-90	NM_152563	exon1	c.G89C	p.R30P	CCTTCCGCTGGCA	.	10	8	1	0	G|0.601;C|0.399	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	19	19	0	0	.	0	0	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MAML2-850	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	113	5	125	2	.	0	0	0	0	0
ROBO4	54538	broad.mit.edu	37	11	124756982	124756982	+	Missense_Mutation	SNP	G	G	A	rs138481093	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ROBO4-92	NM_019055	exon15	c.C2326T	p.R776C	ACAGGCGACTGGA	.	97	3	123	0	G|0.996;A|0.004	6	6	0	0	0
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128857997	128857997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ARHGAP32-231	NM_001142685	exon12	c.A1177G	p.T393A	ATGCTGTGCAGCT	.	30	8	35	0	.	0	0	0	0	0
TAS2R43	259289	hgsc.bcm.edu	37	12	11244814	11244814	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TAS2R43-1	NM_176884	exon1	c.A15G	p.L5L	GATGGGTAGAAAA	.	181	10	124	0	.	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594512	119594512	+	Missense_Mutation	SNP	G	G	C	rs140426282		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SRRM4-2	NM_194286	exon13	c.G1745C	p.R582P	GCAGCCGGAGCCG	.	56	28	0	0	G|0.989;C|0.011	0	0	0	0	0
SCARB1	949	hgsc.bcm.edu	37	12	125348263	125348263	+	Missense_Mutation	SNP	C	C	T	rs4238001	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SCARB1-226	NM_005505	exon1	c.G4A	p.G2S	AGCAGCCCATGTC	.	54	28	0	0	C|0.935;T|0.065	862	324	537	0	1
EP400	57634	broad.mit.edu	37	12	132547096	132547097	+	Frame_Shift_Del	DEL	GC	GC	-	rs151326088	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EP400-520	NM_015409	exon47	c.8184_8185del	p.2728_2729del	ACAACAGCAGCAG	.	239	7	143	0	.	0	0	0	0	0
EP400	57634	hgsc.bcm.edu;broad.mit.edu	37	12	132547099	132547099	+	Silent	SNP	G	G	A	rs145603866	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EP400-520	NM_015409	exon47	c.G8187A	p.Q2729Q	ACAGCAGCAGCAG	.	253	24	138	0	G|0.997;A|0.003	9	9	0	0	0
EP400	57634	broad.mit.edu	37	12	132547129	132547129	+	Silent	SNP	G	G	A	rs138819442	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EP400-520	NM_015409	exon47	c.G8217A	p.Q2739Q	GCAGCAGCAGCAG	.	321	15	195	0	G|1.000;A|0.000	29	20	9	0	0
DLEU1	10301	broad.mit.edu	37	13	50656582	50656582	+	RNA	SNP	T	T	A	rs2066575	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	.	.	.	.	AGACCTTGTATAT	.	57	4	107	0	T|0.787;A|0.213	3	3	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	23	8	0	0	T|0.478;C|0.522	1	1	0	0	0
EPB42	2038	broad.mit.edu	37	15	43501531	43501531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EPB42-92	NM_000119	exon6	c.G863T	p.G288V	CCTCGGCCGGTGA	.	151	9	28	0	.	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306346	+	Missense_Mutation	SNP	C	C	G	rs3865205	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TPSD1-90	NM_012217	exon1	c.C65G	p.P22R	CGAGCCCGGCCTA	.	352	19	5	0	C|0.851;T|0.149	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PKD1-91	NM_000296	exon26	c.T9330C	p.P3110P	ACAGAAAGGGATG	.	318	44	87	1	A|0.500;G|0.500	30	3	27	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	58	25	1	0	G|0.793;A|0.207	32	28	4	0	0
PRSS27	83886	broad.mit.edu	37	16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	138	38	27	8	.	3	2	1	0	0
C16orf82	162083	broad.mit.edu	37	16	27078705	27078705	+	Missense_Mutation	SNP	T	T	C	rs115398674	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001145545	exon1	c.T389C	p.I130T	GCTCCATAGACCC	.	85	4	31	0	T|0.980;C|0.020	0	0	0	0	0
GPT2	84706	broad.mit.edu	37	16	46956237	46956237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GPT2-92	NM_133443	exon9	c.G1121T	p.R374L	CGGTGCGCCTGTG	.	171	3	98	0	.	31	31	0	0	0
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SALL1-98	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	150	17	46	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	7	7	0	0	T|0.035;G|0.004	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	11	11	0	0	G|0.001;A|0.999	0	0	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61851433	61851433	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CDH8-161	NM_001796	exon7	c.G1227C	p.V409V	CCCAATCACGGAG	.	242	91	153	0	.	2	2	0	0	0
FUK	197258	hgsc.bcm.edu	37	16	70507214	70507214	+	Missense_Mutation	SNP	C	C	T	rs201801842		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FUK-91	NM_145059	exon15	c.C1735T	p.R579C	GCTGTCCGCGAGG	.	75	44	1	0	C|0.999;T|0.000	5	4	1	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	21	11	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	25	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	23	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	14	13	0	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	22	22	0	0	T|0.657;C|0.343	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046054	4046054	+	Missense_Mutation	SNP	G	G	A	rs199896183		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZZEF1-93	NM_015113	exon1	c.C136T	p.P46S	CGGCGGGTGGTAG	.	16	16	0	0	.	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	10	10	0	0	C|0.015;A|0.985	0	0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11778273	11778273	+	Missense_Mutation	SNP	T	T	G	rs141082617	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	DNAH9-168	NM_001372	exon53	c.T10250G	p.I3417S	CTCCCATTCCAGT	.	99	3	144	1	T|0.996;G|0.004	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001130677	exon1	c.C290T	p.P97L	ACGCCGGGCCGCC	.	4	4	0	0	G|0.750;A|0.250	0	0	0	0	0
C17orf53	78995	bcgsc.ca	37	17	42225547	42225547	+	Missense_Mutation	SNP	A	A	C	rs227584	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	C17orf53-90	NM_001171251	exon3	c.A376C	p.T126P	AGAGAGACAGCAA	.	235	6	284	3	T|0.094;G|0.124	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096100	79096100	+	Missense_Mutation	SNP	C	C	G	rs62073020		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	AATK-933	NM_001080395	exon11	c.G1636C	p.D546H	CGCAGTCAGGGTC	.	9	7	0	0	.	1	0	1	0	0
ACTG1	71	bcgsc.ca	37	17	79478007	79478007	+	Silent	SNP	G	G	A	rs1135989	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ACTG1-91	NM_001614	exon5	c.C930T	p.A310A	CCTGTCGGCAATG	.	207	7	213	2	G|0.711;A|0.289	16	16	0	0	0
MOCOS	55034	hgsc.bcm.edu	37	18	33767568	33767568	+	Missense_Mutation	SNP	C	C	A	rs113873219		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MOCOS-91	NM_017947	exon1	c.C66A	p.S22R	CCCGAGCGCACCG	.	14	14	0	0	C|0.943;A|0.057	23	0	23	0	0
KCNG2	26251	hgsc.bcm.edu	37	18	77624240	77624240	+	Silent	SNP	C	C	T	rs140218057	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KCNG2-90	NM_012283	exon1	c.C573T	p.A191A	CACGGCCGTGGGC	.	72	60	0	0	C|0.999;T|0.001	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	18	18	0	0	A|0.114;G|0.886	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	45	45	0	0	C|0.766;T|0.234	10	0	10	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	16	9	0	0	A|0.411;G|0.589	1	1	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8551112	8551112	+	Silent	SNP	G	G	T	rs12977861	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HNRNPM-68	NM_005968	exon14	c.G1800T	p.L600L	GGCCCTGGGCGCT	.	94	61	0	0	G|0.960;T|0.040	79	41	38	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	16	7	0	0	C|0.788;T|0.212	5	2	3	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	52	31	0	0	C|0.671;A|0.329	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	28	9	0	0	C|0.617;T|0.383	20	7	13	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	41	19	1	0	C|0.883;G|0.117	4	2	2	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GDF1-226	NM_001492	exon8	c.C353T	p.A118V	GCCGAGGCAGGCT	.	9	6	0	0	G|0.715;A|0.285	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	30	30	0	0	A|0.873;G|0.127	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	90	4	65	1	T|0.999;G|0.001	10	10	0	0	0
C19orf55	148137	hgsc.bcm.edu	37	19	36258934	36258934	+	Missense_Mutation	SNP	C	C	T	rs200267133		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	C19orf55-23	NM_001039887	exon9	c.C1187T	p.A396V	TGCTTGCCCAGGG	.	56	26	1	0	.	0	0	0	0	0
PRODH2	58510	broad.mit.edu	37	19	36303169	36303169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRODH2-92	NM_021232	exon4	c.C605A	p.A202E	TACCACGCCTCAC	.	151	5	26	0	.	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876383	38876383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GGN-90	NM_152657	exon3	c.C1519T	p.P507S	GCGAGGGCTCAGC	.	29	11	0	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	28	18	0	0	G|0.349;A|0.651	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	32	31	0	0	T|0.545;C|0.455	0	0	0	0	0
DMRTC2	63946	broad.mit.edu	37	19	42354650	42354650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	DMRTC2-90	NM_001040283	exon8	c.G873T	p.Q291H	GCTGCAGCAAGAG	.	57	4	44	0	.	0	0	0	0	0
ZNF221	7638	broad.mit.edu;bcgsc.ca	37	19	44469119	44469119	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF221-91	NM_013359	exon4	c.G99A	p.K33K	ATTCAAGGATGTG	.	251	7	199	0	.	0	0	0	0	0
BCL3	602	hgsc.bcm.edu	37	19	45261520	45261520	+	Silent	SNP	C	C	T	rs34401216	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	BCL3-848	NM_005178	exon7	c.C909T	p.N303N	CGTGAACGCGCAA	.	34	21	0	0	C|0.993;T|0.007	9	2	7	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	48	25	1	0	C|0.804;T|0.196	4	3	1	0	0
RUVBL2	10856	ucsc.edu	37	19	49507542	49507542	+	Silent	SNP	A	A	G	rs11558800	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	RUVBL2-227	NM_006666	exon4	c.A132G	p.Q44Q	TTCGCAAGGCATG	.	140	77	13	0	A|0.924;G|0.076	0	0	0	0	0
FCGRT	2217	broad.mit.edu	37	19	50028734	50028734	+	Missense_Mutation	SNP	G	G	T	rs34522905	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FCGRT-91	NM_001136019	exon6	c.G892T	p.V298L	TCCTCCGTGCTCG	.	146	4	86	0	G|0.996;T|0.004	26	26	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	22	11	0	0	T|0.228;C|0.772	1	1	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51844471	51844471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001163922	exon2	c.C831A	p.Y277X	AGCCGTGTAGACC	.	158	4	36	0	.	0	0	0	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52714629	52714629	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PPP2R1A-1666	NM_014225	exon4	c.G387T	p.V129V	CTTTGTGCCGCTA	.	158	7	43	0	.	280	253	25	1	1
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52941934	52941934	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF534-68	NM_001143939	exon4	c.G1260A	p.G420G	TGGGGGGAGGCGT	.	149	36	98	0	.	0	0	0	0	0
EPN1	29924	broad.mit.edu	37	19	56188543	56188543	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001130071	exon1	c.T6G	p.G2G	GATGGGTGATCAG	.	163	18	86	7	.	7	7	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	16	14	0	0	.	0	0	0	0	0
ZNF837	116412	hgsc.bcm.edu	37	19	58879606	58879606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF837-68	NM_138466	exon3	c.G1094T	p.C365F	TCGGCGCACTCGT	.	83	54	0	0	.	0	0	0	0	0
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59010241	59010241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SLC27A5-90	NM_012254	exon9	c.C1807G	p.P603A	GGCCGGGGGCTAG	.	182	76	90	0	.	21	16	5	0	0
EPT1	85465	broad.mit.edu	37	2	26587743	26587743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	.	.	.	.	TTTCTGGCTTTCT	.	38	4	65	0	.	4	4	0	0	0
KCNK3	3777	hgsc.bcm.edu	37	2	26915985	26915985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KCNK3-91	NM_002246	exon1	c.C242G	p.A81G	GCTTCGCCGGCTC	.	43	17	3	0	.	72	36	36	0	0
PSME4	23198	bcgsc.ca	37	2	54115096	54115096	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PSME4-275	NM_014614	exon39	c.C4419A	p.A1473A	TTGCTGGGCAAGG	.	85	5	90	0	.	13	13	0	0	0
USP34	9736	broad.mit.edu	37	2	61493260	61493260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	USP34-579	NM_014709	exon42	c.A5476T	p.S1826C	TTAGACTTGGCAA	.	60	3	77	0	.	1	1	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	108	64	22	6	.	3	2	1	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
CPS1	1373	ucsc.edu;bcgsc.ca	37	2	211504722	211504722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CPS1-162	NM_001122633	exon25	c.G2916T	p.E972D	TCAGGAGCATGAT	.	38	4	26	0	.	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu	37	2	220313680	220313680	+	Silent	SNP	G	G	C	rs60593157	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SPEG-383	NM_005876	exon4	c.G1800C	p.R600R	GACCCGGAGCAGA	.	16	9	0	0	G|0.945;C|0.055	1	0	1	0	0
PRR21	643905	bcgsc.ca	37	2	240981459	240981459	+	Missense_Mutation	SNP	A	A	G	rs147134334	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRR21-70	NM_001080835	exon1	c.T941C	p.M314T	AGAGGCATGGACG	.	123	33	124	7	A|0.993;G|0.007	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982075	240982075	+	Missense_Mutation	SNP	A	A	G	rs139834525	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRR21-70	NM_001080835	exon1	c.T325C	p.C109R	AGAGGCATGGACG	.	62	35	129	10	A|0.968;G|0.032	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	15	15	0	0	A|0.165;G|0.835	0	0	0	0	0
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1293253	1293253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SDCBP2-154	NM_080489	exon6	c.A538G	p.I180V	CGACAATCTTATC	.	241	75	191	0	.	4	2	2	0	0
LZTS3	0	broad.mit.edu	37	20	3145141	3145141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_014731	exon3	c.A1981C	p.T661P	AGGGGGTCCAGGC	.	153	24	55	0	.	7	6	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29631557	29631557	+	RNA	SNP	A	A	G	rs1803595	bycluster;by2hit2allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FRG1B-22	.	.	.	.	CTGAAAAAGAAAC	.	337	10	334	1	.	137	40	97	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	5	5	0	0	C|0.999;T|0.001	2	0	2	0	0
EVA1C	59271	bcgsc.ca	37	21	33840095	33840095	+	Silent	SNP	C	C	T	rs8130653	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_058187	exon4	c.C573T	p.Y191Y	GACCTACGGCAGG	.	78	6	64	0	C|0.917;T|0.083	3	3	0	0	0
C21orf33	8209	ucsc.edu	37	21	45553596	45553596	+	Missense_Mutation	SNP	T	T	C	rs968714	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	C21orf33-91	NM_198155	exon1	c.T17C	p.V6A	TGAGGGTCCTGGT	.	367	172	14	0	T|0.378;C|0.622	99	50	48	0	1
KRTAP10-10	353333	ucsc.edu	37	21	46057418	46057418	+	Missense_Mutation	SNP	G	G	C	rs116673061	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KRTAP10-10-90	NM_181688	exon1	c.G84C	p.E28D	CTGCGAGCCCTGC	.	123	51	11	0	G|0.757;C|0.243	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057422	46057422	+	Missense_Mutation	SNP	T	T	A	rs112205018	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KRTAP10-10-90	NM_181688	exon1	c.T88A	p.C30S	GAGCCCTGCTGCT	.	126	55	11	0	T|0.746;A|0.254	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	7	7	0	0	G|0.826;C|0.174	0	0	0	0	0
MIF	4282	hgsc.bcm.edu	37	22	24237074	24237074	+	Missense_Mutation	SNP	C	C	T	rs182012324		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MIF-514	NM_002415	exon2	c.C224T	p.S75F	ACCGCTCCTACAG	.	24	7	0	0	C|0.999;T|0.000	403	402	1	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	30	28	0	0	A|0.354;G|0.646	0	0	0	0	0
BAIAP2L2	80115	broad.mit.edu;bcgsc.ca	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	BAIAP2L2-91	NM_025045	exon12	c.1322_1363del	p.441_455del	TTGGGGTGCGGGA	.	85	0	18	0	.	0	0	0	0	0
BHLHE40	8553	bcgsc.ca	37	3	5024771	5024771	+	Silent	SNP	T	T	C	rs908078	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	BHLHE40-91	NM_003670	exon5	c.T633C	p.G211G	CAAAGGTTCGGAA	.	108	7	134	1	T|0.855;C|0.145	3	3	0	0	0
TRAK1	22906	broad.mit.edu	37	3	42251607	42251607	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TRAK1-91	NM_001265608	exon14	c.2093delA	p.E698fs	AGGAGGAGGGGTC	.	82	9	93	0	.	0	0	0	0	0
TRAK1	22906	broad.mit.edu	37	3	42251611	42251612	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TRAK1-91	NM_001265608	exon14	c.2097_2098del	p.699_700del	GGAGGGGTCTGGT	.	86	9	103	0	.	0	0	0	0	0
DHX30	22907	broad.mit.edu	37	3	47888819	47888819	+	Silent	SNP	C	C	T	rs114902473	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	DHX30-228	NM_138615	exon12	c.C1986T	p.I662I	GCACATCGATGCT	.	212	6	249	0	C|0.998;T|0.002	21	21	0	0	0
IFRD2	7866	broad.mit.edu	37	3	50325647	50325647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	IFRD2-212	NM_006764	exon12	c.G1496A	p.R499Q	TTGTCCCGCACAC	.	77	4	110	0	.	37	36	1	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	7	7	0	0	G|0.252;C|0.748	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	22	12	1	0	T|0.412;A|0.588	0	0	0	0	0
ADCY5	111	hgsc.bcm.edu	37	3	123167249	123167249	+	Silent	SNP	G	G	A	rs4678027		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ADCY5-94	NM_183357	exon1	c.C144T	p.G48G	GGCAGAGCCCCCG	.	10	10	0	0	G|0.028;A|0.972	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260995	126260995	+	Silent	SNP	C	C	T	rs7614066	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CHST13-90	NM_152889	exon3	c.C600T	p.Y200Y	GCGCTACGGTGCA	.	28	18	0	0	C|0.956;T|0.044	0	0	0	0	0
EFCC1	79825	broad.mit.edu	37	3	128751736	128751736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_024768	exon4	c.T1210G	p.W404G	GAGAGGTGGCAGG	.	331	24	91	7	.	0	0	0	0	0
SI	6476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164783069	164783069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SI-104	NM_001041	exon7	c.C787T	p.R263X	GGTCTCGAGTAAA	.	211	96	154	1	.	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TNK2-957	NM_001010938	exon13	c.C1953T	p.F651F	CTCACCGAAGTCG	.	12	9	0	0	G|0.936;A|0.064	5	3	2	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	116	30	0	0	C|0.960;G|0.040	29	6	23	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	21	21	0	0	G|0.440;A|0.560	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	8	8	0	0	A|0.552;T|0.448	0	0	0	0	0
MUC7	4589	bcgsc.ca	37	4	71347240	71347240	+	Missense_Mutation	SNP	T	T	C	rs145745951	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MUC7-93	NM_001145007	exon4	c.T779C	p.V260A	CAGCTGTCCCACC	.	537	49	382	29	T|1.000;C|0.000	0	0	0	0	0
SLC4A4	8671	broad.mit.edu	37	4	72215748	72215748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SLC4A4-95	NM_001098484	exon5	c.T509C	p.I170T	GATCCATCATGCT	.	140	4	75	2	.	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	6	6	0	0	G|0.022;A|0.978	4	0	4	0	0
SEC24D	9871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119653957	119653957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SEC24D-90	NM_014822	exon20	c.G2607C	p.Q869H	CTGTCTCTGGTAT	.	366	75	256	1	.	13	11	2	0	0
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FRG1-90	NM_004477	exon5	c.C409A	p.Q137K	AGAGAACAATGGG	.	328	21	284	7	.	128	128	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	5	4	0	0	T|0.735;G|0.265	0	0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5460838	5460838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KIAA0947-48	NM_015325	exon13	c.G1391T	p.W464L	AACACTGGACCAC	.	222	5	157	1	.	4	4	0	0	0
SLCO4C1	353189	broad.mit.edu;bcgsc.ca	37	5	101592982	101592982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SLCO4C1-93	NM_180991	exon8	c.C1306T	p.Q436X	AAATTTGACCGAG	.	313	12	145	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	9	9	0	0	G|0.980;C|0.020	0	0	0	0	0
CDKL3	51265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133640095	133640095	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CDKL3-389	NM_001113575	exon12	c.1621+1G>T	.	TGTGTACCTTCCA	.	126	40	68	0	.	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	14	14	0	0	G|0.585;C|0.415	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	14	14	0	0	A|0.006;G|0.994	4	0	4	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	5	5	0	0	G|0.000;C|1.000	3	0	3	0	0
HLA-C	3107	mdanderson.org	37	6	31239049	31239049	+	Silent	SNP	G	G	T	rs1065406	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	HLA-C-90	NM_002117	exon3	c.C420A	p.S140S	GTAGGCGGACTGG	.	117	57	27	1	T|0.044;G|0.956	15	15	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	17	17	0	0	T|0.441;C|0.559	0	0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111711365	111711365	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	REV3L-294	NM_002912	exon6	c.T681C	p.G227G	TTCAACACCTTCC	.	135	4	187	0	.	1	1	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	5	5	0	0	G|0.796;C|0.204	1	0	1	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MICALL2-90	NM_182924	exon6	c.T1134C	p.G378G	TCCCCCACCCTGG	.	18	18	0	0	A|0.009;G|0.991	47	0	47	0	0
DNAH11	8701	broad.mit.edu	37	7	21939689	21939689	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	DNAH11-146	.	.	.	.	AGATTATGGACAC	.	209	10	149	0	.	27	27	0	0	0
MPP6	51678	broad.mit.edu	37	7	24705291	24705291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	MPP6-90	NM_016447	exon8	c.G868T	p.D290Y	AGAAGAGACTGGG	.	191	5	129	0	.	7	7	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	32	22	0	0	G|0.889;C|0.111	34	14	20	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	23	23	0	0	C|0.329;G|0.671	21	0	21	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	84	19	0	0	.	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	17	13	0	0	G|0.907;A|0.093	2	0	2	0	0
NSMAF	8439	hgsc.bcm.edu	37	8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	rs59606339	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	NSMAF-91	NM_001144772	exon1	c.T50G	p.I17S	TGCCGGATAGCTC	.	23	21	0	0	A|0.754;C|0.246	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	23	23	0	0	T|0.642;G|0.358	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	368	28	77	0	.	0	0	0	0	0
FOXH1	8928	hgsc.bcm.edu	37	8	145700381	145700381	+	Missense_Mutation	SNP	C	C	G	rs144830740	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FOXH1-226	NM_003923	exon3	c.G338C	p.S113T	ATCAGGCTCACGT	.	49	42	2	0	C|0.997;G|0.003	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	18	18	0	0	G|0.992;C|0.006	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	34	33	0	0	G|0.572;C|0.428	2	0	2	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	59	29	0	0	G|0.807;C|0.193	6	3	3	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	9	9	0	0	A|0.235;G|0.765	2	0	2	0	0
IER5L	389792	hgsc.bcm.edu	37	9	131940019	131940019	+	Missense_Mutation	SNP	G	G	A	rs184457	byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	IER5L-226	NM_203434	exon1	c.C313T	p.P105S	CGGCCGGCTCGCG	.	4	4	0	0	G|0.700;A|0.300	0	0	0	0	0
SOHLH1	402381	broad.mit.edu	37	9	138590196	138590196	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SOHLH1-135	NM_001012415	exon3	c.G324T	p.G108G	ACTGGGCCCCAGG	.	348	11	59	0	.	1	1	0	0	0
VCX	26609	broad.mit.edu	37	X	7811644	7811644	+	Missense_Mutation	SNP	G	G	A	rs199801261		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	VCX-22	NM_013452	exon3	c.G208A	p.A70T	GAGAGCGCGCCAG	.	52	3	13	0	.	0	0	0	0	0
AMOT	154796	broad.mit.edu	37	X	112059030	112059030	+	Silent	SNP	A	A	G	rs143986904	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	AMOT-131	NM_001113490	exon2	c.T948C	p.S316S	CCCCCCAGAGGTC	.	182	5	216	1	A|0.995;G|0.005	1	1	0	0	0
FBXL15	79176	broad.mit.edu	37	10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	FBXL15-226	NM_024326	exon4	c.869_870insG	p.A290fs	ATATGGCGGGCTT	.	224	9	48	0	.	0	0	0	0	0
SIX6	4990	broad.mit.edu	37	14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	SIX6-90	NM_007374	exon2	c.667_668insC	p.A223fs	AGCCCGGCCGCCA	.	138	11	28	0	.	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	PAQR4-68	NM_152341	exon1	c.106_107insC	p.S36fs	AGCGGCTCGGGCT	.	222	11	16	0	.	0	0	0	0	0
PIEZO1	9780	broad.mit.edu	37	16	88789666	88789667	+	In_Frame_Ins	INS	-	-	CCTGCT	rs11281795		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_001142864	exon32	c.4406_4407insAGCAGG	p.A1469delinsEQA	TGCCTTGCCTGCT	.	85	24	9	0	-|0.897;CCTGCT|0.103	0	0	0	0	0
CRIPAK	285464	broad.mit.edu	37	4	1388622	1388623	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	CRIPAK-90	NM_175918	exon1	c.323_324insCA	p.L108fs	GCCTGCTCACGTG	.	213	47	16	0	.	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	.	.	NM_203403	exon1	c.147_148insGGCGGCGGC	p.G49delinsGGGG	TGGTGGTGGCGGC	.	98	0	9	0	.	0	0	0	0	0