Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	6	6	0	0	G|0.647;A|0.353	3	0	3	0	0
KIAA0754	643314	broad.mit.edu;mdanderson.org	37	1	39879083	39879083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_015038	exon1	c.C3146A	p.P1049Q	CCACCCCAGAGGA	.	25	11	19	0	.	0	0	0	0	0
GBP7	388646	ucsc.edu	37	1	89599070	89599070	+	Silent	SNP	T	T	C	rs151091316	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GBP7-92	NM_207398	exon10	c.A1533G	p.E511E	CTGCTGTTCCTTC	.	118	24	155	10	T|0.997;C|0.003	0	0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	rs75067537	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IGSF3-92	NM_001542	exon8	c.T1916C	p.I639T	TTCTCGATGGCAG	.	79	9	104	1	A|0.500;G|0.500	18	11	7	0	0
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117618146	117618146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTF2-91	NM_003594	exon5	c.C940G	p.Q314E	CATTTCCAAGAGC	.	101	48	114	0	.	0	0	0	0	0
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120378701	120378701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NBPF7-24	NM_001047980	exon7	c.G1045C	p.E349Q	TCTGTTCAACTAG	.	129	56	173	0	.	0	0	0	0	0
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145441200	145441202	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CAA	CAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TXNIP-92	NM_006472	exon8	c.1158_1160del	p.386_387del	CATCCTCAACAAC	.	108	25	98	0	.	0	0	0	0	0
DENND4B	9909	broad.mit.edu	37	1	153906135	153906135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DENND4B-69	NM_014856	exon20	c.A3154C	p.T1052P	GGGGGGTGCCTGC	.	38	10	20	2	.	14	13	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154076608	154076608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NUP210L-77	NM_001159484	exon13	c.C1699A	p.P567T	CAATGGGTATTTC	.	58	4	72	0	.	0	0	0	0	0
SCAMP3	10067	ucsc.edu;bcgsc.ca	37	1	155230131	155230131	+	Silent	SNP	C	C	T	rs1142287	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SCAMP3-93	NM_005698	exon4	c.G378A	p.G126G	TGTGCCCCCCAGG	.	26	4	35	0	C|0.584;T|0.416	0	0	0	0	0
ATP1B1	481	bcgsc.ca	37	1	169096477	169096477	+	Missense_Mutation	SNP	C	C	T	rs141812161	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ATP1B1-540	NM_001677	exon4	c.C398T	p.P133L	GTGAACCGAAAGA	.	56	6	69	0	C|1.000;T|0.000	60	60	0	0	0
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169292366	169292366	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NME7-514	NM_013330	exon3	c.T267C	p.S89S	TTTCCTACTGCCC	.	32	13	50	0	.	1	1	0	0	0
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176679229	176679229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PAPPA2-548	NM_020318	exon11	c.C3568G	p.Q1190E	TTGGATCAATGGG	.	128	52	193	1	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	12	11	0	0	C|0.242;T|0.758	1	0	1	0	0
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205592890	205592890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ELK4-658	NM_021795	exon2	c.G121T	p.V41L	GAGCCACCTCTTC	.	114	50	179	0	.	4	1	3	0	0
ARID4B	51742	bcgsc.ca	37	1	235383188	235383188	+	Silent	SNP	A	A	G	rs4659654	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ARID4B-228	NM_016374	exon16	c.T1503C	p.D501D	TTTGTCATCCAGA	.	45	4	62	0	A|0.549;G|0.451	7	7	0	0	0
CEP170	9859	broad.mit.edu	37	1	243333027	243333027	+	Silent	SNP	A	A	G	rs34466343	bycluster	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CEP170-93	NM_014812	exon12	c.T1746C	p.R582R	AACCCAACGTTTG	.	354	8	456	1	.	4	4	0	0	0
PGBD2	267002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249211953	249211953	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGBD2-91	NM_170725	exon3	c.G1170C	p.L390L	AGAACTGAAAAAA	.	93	36	127	1	.	2	0	2	0	0
FAM208B	54906	hgsc.bcm.edu	37	10	5773063	5773063	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_017782	exon11	c.C1101T	p.C367C	CTTGTGCCGCCCC	.	42	4	30	0	.	7	7	0	0	0
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006163	8006163	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAF3-69	NM_031923	exon3	c.A690G	p.P230P	TTCTCCAGTCCAT	.	222	44	183	0	.	11	10	1	0	0
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24909959	24909959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ARHGAP21-235	NM_020824	exon9	c.A865G	p.N289D	GGTTGTTTCTATT	.	429	93	285	0	.	3	2	1	0	0
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31810238	31810238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZEB1-518	NM_001174096	exon7	c.A1978C	p.N660H	AAGAACAATGATC	.	145	45	87	0	.	6	5	1	0	0
WDFY4	57705	broad.mit.edu	37	10	50155016	50155016	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	WDFY4-22	NM_020945	exon51	c.7977+2T>G	.	TGCAGGTGAGCTG	.	134	16	71	9	.	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	19	11	1	0	C|0.759;A|0.241	2	1	1	0	0
NEURL	9148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105330702	105330702	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NEURL-226	NM_004210	exon2	c.G159T	p.L53L	AGTGCTGCCCAGC	.	210	55	221	1	.	2	2	0	0	0
ADRB1	153	hgsc.bcm.edu	37	10	115804008	115804008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADRB1-658	NM_000684	exon1	c.C117T	p.P39P	GCCGCCCGCCTCG	.	10	8	0	0	.	0	0	0	0	0
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118307963	118307963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PNLIP-92	NM_000936	exon4	c.G293A	p.G98E	ACAAGGGAGAAGA	.	131	31	117	0	.	0	0	0	0	0
BTBD16	118663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124089066	124089066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BTBD16-91	NM_144587	exon11	c.G983A	p.R328H	GCTTGCGTCTGCA	.	71	28	58	0	.	1	1	0	0	0
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131639127	131639127	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EBF3-91	NM_001005463	exon14	c.C1515T	p.S505S	GTTAGCGGAGGAG	.	64	15	89	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC2-90	NM_002457	exon30	c.C4792T	p.P1598S	CCAACACCCACCG	.	77	6	143	0	.	0	0	0	0	0
MUC5B	727897	ucsc.edu	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_002458	exon17	c.A2034G	p.V678V	GGGCGTACAGCTC	.	93	14	37	2	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	80	11	30	1	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	15	15	0	0	C|0.602;T|0.398	1	0	1	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	5	0	0	C|0.748;A|0.252	0	0	0	0	0
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	40136210	40136210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LRRC4C-521	NM_001258419	exon7	c.G1633C	p.V545L	AAATGACCAGCAT	.	143	11	169	0	.	6	6	0	0	0
FOLH1	2346	bcgsc.ca	37	11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	rs199782232		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FOLH1-579	NM_004476	exon7	c.A889G	p.I297V	ATCCAATTGGATG	.	114	6	145	1	.	5	5	0	0	0
FOLH1	2346	ucsc.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FOLH1-579	NM_004476	exon7	c.G842A	p.R281H	ATTCCACGCCTAT	.	93	14	120	4	C|0.974;T|0.026	5	5	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	7	7	0	0	G|0.005;C|0.995	252	1	250	1	0
PPME1	51400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73957234	73957234	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001271593	exon10	c.A990G	p.K330K	TCCTAAATTGCTG	.	66	63	70	0	.	22	0	22	0	0
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7531782	7531782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD163L1-100	NM_174941	exon9	c.G2163T	p.M721I	AATGTTCATTCCC	.	141	28	110	0	.	1	1	0	0	0
WBP11	51729	broad.mit.edu	37	12	14941906	14941906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	WBP11-92	NM_016312	exon11	c.C1471A	p.L491I	GAGGTAGCCTTGG	.	117	4	79	0	.	90	90	0	0	0
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15823815	15823815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EPS8-94	NM_004447	exon4	c.C179T	p.S60L	ATATCTGACACAC	.	120	32	112	0	.	3	3	0	0	0
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52980754	52980754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRT72-96	NM_001146225	exon8	c.G1321A	p.E441K	GATATTCGCCAGA	.	242	50	185	0	.	0	0	0	0	0
HNRNPA1	3178	broad.mit.edu;ucsc.edu	37	12	54677695	54677695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HNRNPA1-93	NM_031157	exon9	c.G1007C	p.R336T	GAGGCAGAAGCTC	.	23	5	15	0	.	2572	1960	610	1	1
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	8	8	0	0	A|0.273;G|0.727	1	0	1	0	0
UNG	7374	hgsc.bcm.edu	37	12	109536257	109536257	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNG-1083	NM_080911	exon2	c.C153G	p.A51A	GAAGGCCCCGGCT	.	94	30	3	0	.	106	71	35	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	14	11	0	0	T|0.767;C|0.233	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187919	117187919	+	Silent	SNP	C	C	T	rs116754010	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001109903	exon4	c.C357T	p.G119G	CCATGGCGGCCAC	.	12	11	0	0	C|0.954;T|0.046	0	0	0	0	0
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129100821	129100821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TMEM132C-68	NM_001136103	exon4	c.G1246A	p.A416T	GACATCGCCGTGT	.	264	77	212	0	.	0	0	0	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EP400-520	NM_015409	exon47	c.G8175A	p.Q2725Q	GCAGCAGCAACAA	.	172	17	145	0	.	0	0	0	0	0
PGAM5	192111	hgsc.bcm.edu	37	12	133294107	133294107	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGAM5-90	NM_138575	exon3	c.G453T	p.T151T	TATGACGCGCGCC	.	77	4	107	0	.	24	24	0	0	0
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81209477	81209477	+	Silent	SNP	G	G	C	rs201355718		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CEP128-91	NM_152446	exon18	c.C2748G	p.L916L	TTGAAAGAGACAC	.	102	20	40	0	G|0.999;C|0.001	4	4	0	0	0
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102028383	102028383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DIO3-494	.	.	.	.	CGCCTGGTCACTA	.	100	22	57	0	.	0	0	0	0	0
C2CD4B	388125	hgsc.bcm.edu	37	15	62456358	62456358	+	Missense_Mutation	SNP	A	A	C	rs8040712		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C2CD4B-68	NM_001007595	exon2	c.T826G	p.F276V	CTCCGAACAGGCT	.	4	4	0	0	A|0.258;C|0.742	0	0	0	0	0
SMAD6	4091	hgsc.bcm.edu	37	15	66995716	66995716	+	Silent	SNP	C	C	T	rs149612008		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SMAD6-415	NM_005585	exon1	c.C120T	p.G40G	CTTGGGCAGCCGA	.	57	23	0	0	A|0.008;C|0.992	0	0	0	0	0
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75782617	75782617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN9-226	NM_002833	exon8	c.C994G	p.R332G	CATAACGGTTTTT	.	110	54	121	0	.	14	7	7	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2140912	2140912	+	Silent	SNP	G	G	C	rs112387277		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PKD1-91	NM_001009944	exon43	c.C11976G	p.A3992A	CAGCGAGGCCGCC	.	23	22	2	0	G|0.999;C|0.001	10	0	10	0	0
FLYWCH2	114984	ucsc.edu;bcgsc.ca	37	16	2946453	2946453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FLYWCH2-22	NM_001142499	exon3	c.G3T	p.M1I	CGGGATGCCCCTG	.	38	4	45	0	.	300	300	0	0	0
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14761544	14761544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BFAR-92	NM_016561	exon8	c.C1213A	p.L405I	CAGGGGCTTTTTG	.	92	41	85	0	.	37	24	13	0	0
TOX3	27324	broad.mit.edu	37	16	52473370	52473370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TOX3-68	NM_001080430	exon7	c.C1498G	p.Q500E	TAATTTGCTGCTG	.	17	3	23	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	0	0	0	0	0
CNOT1	23019	broad.mit.edu	37	16	58577421	58577421	+	Silent	SNP	C	C	T	rs41260	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CNOT1-95	NM_206999	exon31	c.G4524A	p.A1508A	TGGTAACGCCCAG	.	102	6	84	2	C|0.186;T|0.814	6	6	0	0	0
CTRL	1506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67963838	67963838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CTRL-90	NM_001907	exon7	c.G794C	p.X265S	TGAGCTCAGTTGT	.	82	19	54	0	.	2	0	2	0	0
FUK	197258	broad.mit.edu	37	16	70507049	70507049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FUK-91	NM_145059	exon15	c.G1570T	p.A524S	TGGCGGGCCTCCT	.	68	5	13	1	.	3	3	0	0	0
MARVELD3	91862	broad.mit.edu	37	16	71660364	71660365	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MARVELD3-91	NM_001017967	exon1	c.232_233del	p.78_78del	GAGAGGGAGAGAG	.	228	9	93	0	.	0	0	0	0	0
UNC45B	146862	broad.mit.edu	37	17	33475419	33475419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNC45B-157	NM_001267052	exon2	c.A137T	p.Y46F	CGCTTTATCGGAA	.	86	3	141	1	.	0	0	0	0	0
MED1	5469	bcgsc.ca	37	17	37580917	37580917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MED1-620	NM_004774	exon11	c.C814A	p.P272T	TTAATGGTGCAAT	.	56	4	149	0	.	1	1	0	0	0
KRTAP4-4	84616	bcgsc.ca	37	17	39316482	39316482	+	Missense_Mutation	SNP	C	C	G	rs366700	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRTAP4-4-44	NM_032524	exon1	c.G462C	p.R154S	GTAGCACCTGGAC	.	116	6	274	2	C|0.485;G|0.515	0	0	0	0	0
KRTAP4-3	85290	ucsc.edu;bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRTAP4-3-22	NM_033187	exon1	c.A92T	p.Q31L	GTGGTCTGGCAGC	.	109	36	159	0	A|0.046;T|0.954	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	4	4	0	0	A|0.476;G|0.524	3	0	3	0	0
GFAP	2670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42989105	42989105	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GFAP-516	NM_001131019	exon5	c.G841T	p.E281X	TGGCTTCGTGCTT	.	86	70	106	0	.	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66521052	66521052	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PRKAR1A-1141	NM_212471	exon6	c.503-1G>A	.	CTTTTAGGTGATG	.	34	18	67	0	.	2	2	0	0	0
FASN	2194	hgsc.bcm.edu	37	17	80039129	80039129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon38	c.A6506T	p.E2169V	TTGAGCTCACGCT	.	208	14	85	0	.	62	62	0	0	0
FASN	2194	hgsc.bcm.edu	37	17	80042498	80042498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon27	c.T4659G	p.H1553Q	CTGGGCATGGCGC	.	195	26	112	0	.	81	81	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	920642	920642	+	Missense_Mutation	SNP	T	T	A	rs350132		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KISS1R-91	NM_032551	exon5	c.T1091A	p.L364H	AGCTGCTCCGCCT	.	5	5	0	0	T|0.232;A|0.768	3	0	3	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	11	8	0	0	C|0.766;T|0.234	7	4	3	0	0
C19orf24	55009	hgsc.bcm.edu	37	19	1275820	1275820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C19orf24-90	NM_017914	exon1	c.G272T	p.R91L	TGATCCGGGCGTT	.	59	4	7	0	.	0	0	0	0	0
SH3GL1	6455	broad.mit.edu	37	19	4361787	4361787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SH3GL1-659	NM_003025	exon10	c.T917G	p.L306R	TGGTCCAGGGGCG	.	52	7	13	0	.	4	2	2	0	0
CERS4	79603	broad.mit.edu	37	19	8316107	8316107	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_024552	exon3	c.C147T	p.L49L	GGTCCTCCTGGCC	.	115	5	88	0	.	18	17	1	0	0
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KANK3-90	NM_198471	exon5	c.1467_1478del	p.489_493del	CCGTTCTCGCTGT	.	43	7	6	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9066010	9066010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC16-566	NM_024690	exon3	c.G21436C	p.E7146Q	CAAGTTCTGGGCT	.	489	216	326	0	.	0	0	0	0	0
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11234004	11234004	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LDLR-94	NM_001195798	exon15	c.G2295C	p.V765V	GATAGTGACAATG	.	134	27	72	0	.	474	343	131	0	0
RNASEH2A	10535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12918306	12918306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RNASEH2A-524	NM_006397	exon4	c.G397T	p.V133L	CAGGGCGTGAACG	.	296	134	188	0	.	25	13	12	0	0
RAD23A	5886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13063541	13063541	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RAD23A-227	NM_005053	exon8	c.G852A	p.L284L	GATGCTGAACGAG	.	151	36	123	0	.	187	122	65	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	8	8	0	0	C|0.617;T|0.383	18	0	18	0	0
MAU2	23383	hgsc.bcm.edu	37	19	19431690	19431704	+	In_Frame_Del	DEL	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAU2-91	NM_015329	exon1	c.22_36del	p.8_12del	GCGGCAGCGGCCC	.	49	35	4	3	.	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	55	9	14	1	.	25	25	0	0	0
MEGF8	1954	broad.mit.edu	37	19	42867198	42867198	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MEGF8-23	NM_001271938	exon35	c.6059-2A>G	.	ACCCCCAGGGGAG	.	145	8	105	3	.	0	0	0	0	0
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44832623	44832623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZFP112-95	NM_001083335	exon5	c.C1705G	p.Q569E	GGGCTTGAAGATA	.	108	13	74	1	.	14	11	3	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	13	7	2	0	C|0.804;T|0.196	23	12	11	0	0
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46176189	46176189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GIPR-523	NM_000164	exon5	c.C361T	p.P121S	GAGAACCCAGAGA	.	151	30	115	0	.	0	0	0	0	0
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47278856	47278856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SLC1A5-90	NM_005628	exon8	c.C1537G	p.P513A	CAGTGGGGACTGG	.	112	17	101	0	.	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184063	48184063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GLTSCR1-48	NM_015711	exon6	c.C1636T	p.P546S	GCCGCTCCCATCC	.	49	9	0	0	.	2	2	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A606G	p.E202E	CTCCTCTTCCTCC	.	110	5	73	0	.	0	0	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	100	6	82	0	.	0	0	0	0	0
ZNF83	55769	bcgsc.ca	37	19	53116865	53116865	+	Missense_Mutation	SNP	T	T	C	rs141749555		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF83-91	NM_018300	exon3	c.A953G	p.K318R	TTACATTTGTAAG	.	187	9	121	0	T|1.000;C|0.000	216	216	0	0	0
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54313435	54313435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP12-211	NM_144687	exon3	c.A1478T	p.N493I	AGGAAGGCAGAGA	.	257	41	157	0	.	0	0	0	0	0
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56226564	56226564	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP9-294	NM_176820	exon6	c.C2358G	p.V786V	ACAGGAGACAGAG	.	170	30	130	0	.	0	0	0	0	0
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579299	58579299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF135-91	NM_007134	exon4	c.C1519A	p.Q507K	CTCACCCAACACC	.	204	44	128	0	.	0	0	0	0	0
TMEM247	388946	ucsc.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	248	32	212	5	G|1.000;|0.000	0	0	0	0	0
RETSAT	54884	broad.mit.edu	37	2	85577299	85577299	+	Silent	SNP	G	G	A	rs138358940		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RETSAT-70	NM_017750	exon4	c.C663T	p.L221L	GTCGAGGAGCTGA	.	123	3	211	0	G|1.000;A|0.000	51	51	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	5	5	0	0	C|0.795;G|0.205	1	1	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120640081	120640081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN4-228	NM_002830	exon8	c.G469A	p.E157K	TTAGCTGAACTTG	.	116	60	113	0	.	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	.	.	.	.	AGAGTCGTTGTTG	.	318	20	348	11	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179581920	179581920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTN-636	NM_001267550	exon88	c.C25541T	p.T8514I	AGAACTGTCAGAG	.	67	34	114	0	.	0	0	0	0	0
RAPH1	65059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204305290	204305290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RAPH1-1151	NM_213589	exon14	c.C2623G	p.P875A	CAGGGGGAGTTGG	.	33	22	58	1	.	2	0	2	0	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	210705361	210705361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNC80-90	NM_032504	exon20	c.C3352A	p.Q1118K	ATCAGGCAAAGCT	.	94	8	127	0	.	0	0	0	0	0
RHBDD1	84236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227729481	227729481	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RHBDD1-91	NM_001167608	exon4	c.C72T	p.I24I	TGGGATCAACAAT	.	102	42	163	0	.	5	4	1	0	0
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239079640	239079640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ILKAP-118	NM_030768	exon11	c.C982A	p.L328I	TGAAGAGCCCATC	.	141	67	174	0	.	50	26	23	0	1
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9538346	9538346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PAK7-1434	NM_177990	exon7	c.C1652A	p.S551X	AGAACTGACAGGC	.	73	29	82	0	.	1	0	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FRG1B-22	.	.	.	.	CTCGACAATGGTC	.	778	59	690	10	.	117	117	0	0	0
HELZ2	85441	bcgsc.ca	37	20	62198662	62198662	+	Silent	SNP	A	A	G	rs367440	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001037335	exon7	c.T2049C	p.Y683Y	CGAGGCATAGGCC	.	68	61	16	1	A|0.084;G|0.916	1	1	0	0	0
DSCR6	53820	broad.mit.edu;ucsc.edu	37	21	38390362	38390362	+	Missense_Mutation	SNP	G	G	T	rs150799198	byfrequency;alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSCR6-153	NM_018962	exon4	c.G428T	p.R143L	GAGGTCGGCAGGA	.	35	4	33	0	G|0.999;A|0.001	0	0	0	0	0
PDE9A	5152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44185575	44185575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PDE9A-92	NM_002606	exon15	c.G1327C	p.D443H	AATTTTGACTACA	.	306	77	312	1	.	43	31	12	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRTAP10-6-90	NM_198688	exon1	c.C966T	p.S322S	ACCACAGGAGGGG	.	346	7	277	1	.	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	.	.	.	.	GCCCCCCTGCTGC	.	108	14	41	1	.	0	0	0	0	0
POFUT2	23275	broad.mit.edu;mdanderson.org	37	21	46707762	46707762	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	POFUT2-90	NM_015227	exon1	c.C25T	p.L9L	GCAGCAGGAAGAC	.	22	8	13	0	.	44	27	17	0	0
OR11H1	81061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16449102	16449102	+	Missense_Mutation	SNP	G	G	C	rs76160964	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	OR11H1-22	NM_001005239	exon1	c.C703G	p.L235V	GGACAAGAGTATA	.	513	147	431	0	T|1.000;|0.000	0	0	0	0	0
SI	6476	bcgsc.ca	37	3	164764719	164764719	+	Silent	SNP	C	C	A	rs9838509	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SI-104	NM_001041	exon16	c.G1797T	p.A599A	CCAATGCGCAGCA	.	161	5	181	0	C|0.416;A|0.584	0	0	0	0	0
SPATA16	83893	bcgsc.ca	37	3	172766822	172766822	+	Silent	SNP	G	G	A	rs508508	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SPATA16-94	NM_031955	exon3	c.C675T	p.S225S	TGCCACGCTTGCT	.	79	5	137	0	G|0.824;A|0.176	0	0	0	0	0
MAP6D1	79929	hgsc.bcm.edu	37	3	183543009	183543009	+	Silent	SNP	C	C	A	rs114532244	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAP6D1-90	NM_024871	exon1	c.G327T	p.A109A	GCCGGGCGCAGGT	.	35	33	0	0	C|0.982;A|0.018	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506187	195506187	+	Silent	SNP	T	T	C	rs199574462		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC4-90	NM_018406	exon2	c.A12264G	p.S4088S	GGATGCTGAGGAA	.	65	18	253	8	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC4-90	NM_018406	exon2	c.G8440A	p.A2814T	AGGTGGCGTGACC	.	440	28	338	9	.	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001145248	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	802	30	831	9	.	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	131	54	71	6	.	5	4	1	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495064	3495064	+	Missense_Mutation	SNP	C	C	T	rs16844470	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DOK7-91	NM_173660	exon7	c.C1351T	p.R451W	ACGAGACGGCGGG	.	16	16	0	0	C|0.990;T|0.010	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	13	11	0	0	G|0.946;A|0.054	1	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8621339	8621339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CPZ-93	NM_001014447	exon11	c.T1954G	p.Y652D	CTCAAGTACTAGC	.	34	4	34	0	.	6	6	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	6	6	0	0	G|0.440;A|0.560	0	0	0	0	0
CSN1S1	1446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70802862	70802862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001890	exon8	c.G219T	p.Q73H	TACTCAGGTGAGA	.	239	43	128	0	.	0	0	0	0	0
CSN1S1	1446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70810573	70810573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001890	exon15	c.C408A	p.F136L	GCCTTTCCAGCAG	.	254	70	151	1	.	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	7	6	0	0	T|0.691;C|0.309	2	0	2	0	0
DSPP	1834	bcgsc.ca	37	4	88537051	88537051	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSPP-90	NM_014208	exon5	c.T3237C	p.S1079S	CAGCAGTGATAGC	.	752	39	1025	16	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537117	88537117	+	Silent	SNP	C	C	T	rs199799532	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSPP-90	NM_014208	exon5	c.C3303T	p.D1101D	CAGCGACAGCAGC	.	329	28	643	15	.	0	0	0	0	0
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119626935	119626935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	METTL14-90	NM_020961	exon10	c.G1025A	p.R342K	GTAGAAGACGCCT	.	87	21	56	0	.	10	10	0	0	0
SMARCA5	8467	bcgsc.ca	37	4	144442735	144442735	+	Silent	SNP	C	C	T	rs11541117	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SMARCA5-227	NM_003601	exon3	c.C406T	p.L136L	AACTTACTATCCG	.	154	7	115	0	C|0.512;T|0.488	0	0	0	0	0
TRIM60	166655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	165962195	165962195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TRIM60-226	NM_001258025	exon4	c.G971A	p.R324Q	AAAAACGAAACAT	.	154	33	118	0	.	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	7	5	0	0	T|0.352;C|0.648	0	0	0	0	0
SEMA5A	9037	broad.mit.edu	37	5	9197318	9197318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SEMA5A-91	NM_003966	exon10	c.G1030T	p.A344S	GCCAGGCCGAGCG	.	129	9	92	1	.	0	0	0	0	0
FYB	2533	broad.mit.edu	37	5	39135108	39135108	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FYB-24	NM_001243093	exon8	c.C1554A	p.G518G	AATAGGGCCTGTT	.	79	3	41	0	.	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	66462103	66462103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAST4-647	NM_001164664	exon29	c.G7096A	p.D2366N	AACACCGACAGAA	.	135	33	96	0	.	21	15	6	0	0
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	68485476	68485476	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CENPH-153	NM_022909	exon1	c.C15G	p.P5P	GCAGCCCCAGATG	.	51	12	32	0	.	1	0	1	0	0
VCAN	1462	broad.mit.edu;bcgsc.ca	37	5	82833991	82833991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	VCAN-238	NM_004385	exon8	c.G5169T	p.K1723N	GGAAAAGAAAAGG	.	76	5	45	0	.	2	2	0	0	0
CAMK4	814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110819981	110819981	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CAMK4-386	NM_001744	exon11	c.C1239A	p.A413A	AGAGGCCCCCAAA	.	127	39	109	0	.	0	0	0	0	0
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115336915	115336915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_173800	exon10	c.A1799G	p.N600S	TTAAAAATCGGAC	.	376	100	220	0	.	0	0	0	0	0
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu	37	5	149360347	149360348	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SLC26A2-90	NM_000112	exon3	c.1191_1192del	p.397_398del	TATCACTGTATCA	.	130	12	89	0	.	0	0	0	0	0
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156899852	156899852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NIPAL4-68	NM_001099287	exon6	c.G1285A	p.A429T	TCTCCCGCCCCGG	.	95	46	45	0	.	0	0	0	0	0
DBN1	1627	hgsc.bcm.edu	37	5	176900502	176900502	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DBN1-587	NM_004395	exon1	c.C21T	p.S7S	GTGGCCGCTGAAG	.	32	4	0	0	.	7	7	0	0	0
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178608155	178608155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADAMTS2-228	NM_021599	exon5	c.T893C	p.V298A	TCATTGACCTGAA	.	240	69	140	0	.	0	0	0	0	0
CD83	9308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	14131769	14131769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD83-90	NM_004233	exon3	c.G172C	p.E58Q	GGTGAAGAGAGGA	.	127	46	132	0	.	59	34	25	0	0
ATXN1	6310	broad.mit.edu	37	6	16327916	16327918	+	In_Frame_Del	DEL	TGC	TGC	-	rs71806515	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ATXN1-93	NM_001128164	exon7	c.624_626del	p.208_209del	TGCTGATGCTGCT	.	30	19	11	0	.	0	0	0	0	0
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26156922	26156922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HIST1H1E-154	NM_005321	exon1	c.T304A	p.S102T	GGCGCGTCGGGTT	.	124	64	160	0	.	3	1	2	0	0
MUC21	394263	bcgsc.ca	37	6	30954594	30954594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC21-92	NM_001010909	exon2	c.G642C	p.E214D	CTCTGAGTCCAGA	.	237	13	276	4	.	0	0	0	0	0
HLA-DQA1	3117	bcgsc.ca	37	6	32609105	32609105	+	Missense_Mutation	SNP	G	G	A	rs1129740	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HLA-DQA1-90	NM_002122	exon2	c.G101A	p.C34Y	CCTCTTGTGGTGT	.	26	16	164	0	G|0.446;A|0.554	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	12	12	0	0	T|0.441;C|0.559	0	0	0	0	0
ENPP4	22875	broad.mit.edu	37	6	46107907	46107907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ENPP4-94	NM_014936	exon2	c.G587T	p.G196V	AATACGGACCTGA	.	125	4	138	0	.	15	15	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	5	5	0	0	T|0.089;G|0.911	0	0	0	0	0
BVES-AS1	154442	broad.mit.edu	37	6	105585761	105585761	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	.	.	.	.	TATGCTCCGATCA	.	198	5	333	0	.	0	0	0	0	0
ZDHHC14	79683	bcgsc.ca	37	6	158074629	158074629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZDHHC14-227	NM_024630	exon8	c.G1038A	p.M346I	CACCATGTACGGG	.	51	45	84	2	.	4	2	2	0	0
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6175530	6175530	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	USP42-659	NM_032172	exon4	c.C501G	p.L167L	GGCACTCAGTAAT	.	195	34	143	0	.	2	2	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	20	20	0	0	G|0.889;C|0.111	48	0	48	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	15	15	0	0	C|0.329;G|0.671	36	0	36	0	0
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44802986	44802986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZMIZ2-137	NM_031449	exon13	c.C1834T	p.R612X	CCTGCCCGAGGTC	.	299	41	140	1	.	54	50	4	0	0
ELN	2006	broad.mit.edu	37	7	73466109	73466109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ELN-95	NM_001081753	exon16	c.G844T	p.V282F	CCTGGTGTTGGAG	.	129	3	121	0	.	9	9	0	0	0
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99697290	99697290	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MCM7-651	NM_005916	exon3	c.T198A	p.I66I	CTCACAAATTGAG	.	38	6	55	0	.	23	15	8	0	0
MUC17	140453	broad.mit.edu	37	7	100677627	100677627	+	Missense_Mutation	SNP	C	C	G	rs149551296		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC17-95	NM_001040105	exon3	c.C2930G	p.T977S	CCTCGACTCCTAG	.	227	4	243	0	C|1.000;G|0.000	0	0	0	0	0
TAS2R5	54429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141490447	141490447	+	Missense_Mutation	SNP	G	G	T	rs142196311	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAS2R5-90	NM_018980	exon1	c.G286T	p.A96S	TGGTTTGCCACCT	.	118	31	138	0	G|1.000;A|0.000	0	0	0	0	0
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150696313	150696313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NOS3-1011	NM_001160111	exon8	c.A992G	p.Y331C	GCTGGTACGCCCT	.	65	36	57	0	.	5	2	3	0	0
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24811264	24811264	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NEFL-24	NM_006158	exon3	c.G1215A	p.V405V	GCTTCCCACGCTG	.	65	52	86	0	.	215	0	215	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	6	6	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	13	10	1	0	C|0.895;A|0.105	0	0	0	0	0
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69020559	69020559	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PREX2-390	NM_024870	exon24	c.G2931A	p.S977S	ATCTTCGGAGCAA	.	63	22	74	0	.	0	0	0	0	0
JRK	8629	bcgsc.ca	37	8	143746416	143746416	+	Silent	SNP	A	A	G	rs754957	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_003724	exon2	c.T1062C	p.H354H	GCGGGCATGGGGG	.	96	5	139	0	A|0.477;G|0.523	1	1	0	0	0
GNE	10020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36217454	36217454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GNE-115	NM_001128227	exon12	c.G2170C	p.D724H	CCACGTCCTGCAC	.	140	50	169	1	.	31	20	11	0	0
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	9	115421992	115421992	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KIAA1958-91	NM_133465	exon4	c.G1794A	p.T598T	CCGGACGGACAGC	.	165	75	194	2	.	5	3	2	0	0
GPSM1	26086	broad.mit.edu	37	9	139244081	139244081	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GPSM1-90	NM_001145638	exon11	c.C1321G	p.P441A	CGGGGGCCCAGCA	.	116	16	149	10	.	1	1	0	0	0
NOXA1	10811	hgsc.bcm.edu	37	9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	rs112864733		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	6	6	0	0	C|0.934;G|0.066	0	0	0	0	0
KLHL15	80311	hgsc.bcm.edu;bcgsc.ca	37	X	24006761	24006763	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KLHL15-131	NM_030624	exon4	c.1090_1092del	p.364_364del	AGACATATCTGCC	.	231	103	166	1	.	0	0	0	0	0
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30577888	30577888	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G585A	p.E195E	GCTTTTCTCTTTG	.	147	38	87	0	.	0	0	0	0	0
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30577890	30577890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G583A	p.E195K	TTTTCTCTTTGAT	.	146	36	87	0	.	0	0	0	0	0
TAF1	6872	ucsc.edu;bcgsc.ca	37	X	70587376	70587376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAF1-900	NM_004606	exon2	c.G208T	p.G70W	GGCTTGGGGGCTT	.	270	127	183	2	.	6	6	0	0	0
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132090979	132090979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HS6ST2-130	NM_001077188	exon3	c.C804A	p.H268Q	CGGCCGGTGGCAA	.	519	111	256	0	.	0	0	0	0	0
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133282	153133282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	L1CAM-138	NM_000425	exon15	c.G1912T	p.A638S	CTTCTGCAGGACT	.	177	34	125	0	.	14	14	0	0	0
SIX6	4990	broad.mit.edu	37	14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SIX6-90	NM_007374	exon2	c.667_668insC	p.A223fs	AGCCCGGCCGCCA	.	124	6	28	0	.	0	0	0	0	0
C16orf11	146325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	615240	615241	+	In_Frame_Ins	INS	-	-	GACGAGGAGTTCCCA	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C16orf11-23	NM_145270	exon3	c.1649_1650insGACGAGGAGTTCCCA	p.A550delinsATRSSQ	GTGTTGCGACGAG	.	265	13	151	0	.	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	25	24	5	5	-|0.606;CCG|0.394	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	9	0	2	0	T|0.470;C|0.530	0	0	0	0	0
ZNF83	55769	bcgsc.ca	37	19	53116855	53116856	+	Missense_Mutation	DNP	CT	CT	TA	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF83-91	NM_018300	exon3	c.A962T	p.E321V	CCACACTCATTAC	.	192	0	126	0	.	0	0	0	0	0