Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AKR7L	246181	bcgsc.ca	37	1	19595159	19595159	+	RNA	SNP	C	C	T	rs116631486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	AKR7L-90	.	.	.	.	CTCCACCAGGGCA	.	133	5	161	2	C|0.972;T|0.028	0	0	0	0	0
GMEB1	10691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29040851	29040851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GMEB1-90	NM_006582	exon10	c.G1288A	p.G430S	AGCCAGGGCTCCA	.	174	131	259	2	.	4	0	4	0	0
COL16A1	1307	bcgsc.ca	37	1	32165495	32165495	+	Missense_Mutation	SNP	G	G	T	rs2228552	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	COL16A1-98	NM_001856	exon4	c.C185A	p.T62K	GCAGACGTCTTCA	.	69	5	132	1	G|0.551;T|0.449	2	2	0	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38397696	38397696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	INPP5B-227	NM_005540	exon7	c.T421A	p.F141I	ACAGGAATTCAGG	.	20	9	29	0	.	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	11	10	0	0	T|0.861;C|0.139	2	0	2	0	0
IGSF3	3321	ucsc.edu;bcgsc.ca	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	IGSF3-92	NM_001542	exon8	c.G2039A	p.R680Q	GCCAGTCGCGTCC	.	94	21	102	4	C|0.990;T|0.010	1	1	0	0	0
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599417	247599417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	NLRP3-674	NM_004895	exon6	c.C2644G	p.P882A	AAGAATCCACAGT	.	103	45	106	0	.	0	0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25861657	25861657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GPR158-141	NM_020752	exon7	c.G1594T	p.V532L	CTGGCAGTAATAC	.	120	3	189	1	.	0	0	0	0	0
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116225545	116225545	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ABLIM1-153	NM_002313	exon12	c.G1353A	p.T451T	CTGGCTCGTGGAC	.	137	55	176	0	.	0	0	0	0	0
KRTAP5-4	387267	bcgsc.ca	37	11	1643204	1643204	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_001012709	exon1	c.C120T	p.S40S	ACAGCCGGAGCCA	.	92	20	42	0	.	1	1	0	0	0
OR52N1	79473	bcgsc.ca	37	11	5809746	5809746	+	Missense_Mutation	SNP	C	C	T	rs10742787	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OR52N1-69	NM_001001913	exon1	c.G301A	p.A101T	TCTGGGCGAGGCA	.	152	6	164	1	C|0.675;T|0.325	0	0	0	0	0
EIF3F	8665	hgsc.bcm.edu	37	11	8009015	8009015	+	Missense_Mutation	SNP	C	C	T	rs1043738	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EIF3F-500	NM_003754	exon1	c.C116T	p.P39L	CGGTTCCCGCTGC	.	6	6	0	0	C|0.964;T|0.036	88	7	81	0	0
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18428729	18428729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LDHA-650	NM_001165414	exon8	c.C987G	p.I329M	TGGAATCTCAGAC	.	159	10	186	0	.	606	580	25	1	0
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47772525	47772525	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	FNBP4-91	NM_015308	exon6	c.G849T	p.T283T	AGAAATCGTTTTC	.	43	30	77	0	.	4	1	3	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64112617	64112617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CCDC88B-94	NM_032251	exon14	c.G2604T	p.E868D	GAAGGAGGCCCTC	.	33	4	13	0	.	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	6	6	0	0	C|0.921;T|0.079	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0
TPCN2	219931	bcgsc.ca	37	11	68840160	68840160	+	Missense_Mutation	SNP	A	A	G	rs3750965	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TPCN2-90	NM_139075	exon12	c.A1127G	p.K376R	CCCACAAACAGGC	.	108	6	161	1	A|0.718;G|0.282	0	0	0	0	0
TAS2R50	259296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11138943	11138943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TAS2R50-92	NM_176890	exon1	c.C517A	p.H173N	AAAGATGTACTGT	.	135	15	99	0	.	0	0	0	0	0
TAS2R31	259290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11183657	11183657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_176885	exon1	c.A278G	p.H93R	CTGAAATGGCCGG	.	315	86	225	1	.	0	0	0	0	0
FAR2	55711	broad.mit.edu	37	12	29450110	29450110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	FAR2-90	NM_018099	exon4	c.522delA	p.P174fs	GGAGCCAAAAAAA	.	235	7	153	0	.	0	0	0	0	0
KRT5	3852	bcgsc.ca	37	12	52912805	52912805	+	Missense_Mutation	SNP	C	C	T	rs3194286	by2hit2allele	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KRT5-90	NM_000424	exon2	c.G695A	p.S232N	ACGATGCTGTCCA	.	468	39	307	8	.	0	0	0	0	0
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93251238	93251238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EEA1-229	NM_003566	exon4	c.A269G	p.Q90R	ACCTCTTGTCTGA	.	202	62	137	0	.	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TMEM119-69	NM_181724	exon2	c.C48G	p.L16L	CCCCAGGAGCAGC	.	5	5	3	0	G|0.822;C|0.178	1	0	1	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	4	4	1	0	C|0.925;A|0.075	0	0	0	0	0
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59835519	59835519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DAAM1-227	NM_014992	exon25	c.T3179C	p.I1060T	AACGTATTACCAA	.	147	60	108	0	.	35	22	13	0	0
CLPX	10845	bcgsc.ca	37	15	65449228	65449228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CLPX-90	NM_006660	exon9	c.C1100A	p.P367Q	ATGCCTGGCACAC	.	66	4	100	1	.	23	23	0	0	0
TMEM8A	58986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	426160	426160	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TMEM8A-92	NM_021259	exon6	c.C1200T	p.L400L	GATGGTGAGGGAA	.	236	65	72	0	.	33	24	9	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	5	5	0	0	C|0.615;G|0.385	0	0	0	0	0
IGSF6	10261	hgsc.bcm.edu;bcgsc.ca	37	16	21652899	21652901	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	IGSF6-68	NM_005849	exon6	c.680_682del	p.227_228del	CATAAGTGTTGTT	.	60	19	49	0	.	0	0	0	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879165	3879165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DLGAP1-229	NM_001242761	exon4	c.G904T	p.A302S	CCATGGCCTGGTC	.	51	7	58	2	.	0	0	0	0	0
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7007263	7007263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LAMA1-149	NM_005559	exon29	c.G4135A	p.G1379R	GGTACCCAGGGGC	.	58	25	58	1	.	0	0	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	25	21	0	0	T|0.852;C|0.148	47	32	15	0	0
OR7G3	390883	bcgsc.ca	37	19	9236886	9236886	+	Silent	SNP	A	A	G	rs10424352	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OR7G3-69	NM_001001958	exon1	c.T741C	p.V247V	GGAAACAACGATT	.	187	7	140	1	A|0.585;G|0.415	0	0	0	0	0
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13879744	13879744	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MRI1-91	NM_001031727	exon5	c.C831T	p.Y277Y	CTTCTACGTGGCT	.	176	38	140	0	.	9	6	3	0	0
BRD4	23476	broad.mit.edu	37	19	15354176	15354176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	BRD4-767	NM_058243	exon14	c.2704delC	p.Q902fs	GGGGCTGTGGGAG	.	49	9	4	0	.	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	6	4	0	0	G|0.917;A|0.083	1	0	1	0	0
ZNF264	9422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57723887	57723887	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ZNF264-92	NM_003417	exon4	c.C1422T	p.F474F	CCACTTCAGCATC	.	159	77	135	2	.	7	7	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	0	0	0	0	0
KRTCAP3	200634	hgsc.bcm.edu;broad.mit.edu	37	2	27665608	27665609	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KRTCAP3-90	NM_173853	exon2	c.191_192del	p.64_64del	ATGTCATCTCTGT	.	19	16	4	0	.	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	249	24	171	0	G|1.000;|0.000	0	0	0	0	0
TTC7A	57217	bcgsc.ca	37	2	47277186	47277186	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TTC7A-136	NM_020458	exon17	c.2017+1G>T	.	ACTCTGGTAAGAA	.	71	5	97	0	.	1	1	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	5	5	0	0	A|0.476;G|0.524	0	0	0	0	0
INPP4A	3631	broad.mit.edu	37	2	99172244	99172244	+	Missense_Mutation	SNP	A	A	G	rs2278206	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	INPP4A-227	NM_001134224	exon17	c.A1810G	p.T604A	CCCTCCACTGCAT	.	100	3	108	0	A|0.729;G|0.271	2	2	0	0	0
MALL	7851	broad.mit.edu;bcgsc.ca	37	2	110873264	110873264	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MALL-92	NM_005434	exon2	c.105+1G>A	.	CACTCACCAGCTC	.	146	116	54	2	.	0	0	0	0	0
MARCO	8685	bcgsc.ca	37	2	119739063	119739063	+	Missense_Mutation	SNP	T	T	C	rs6761637	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MARCO-95	NM_006770	exon9	c.T845C	p.F282S	GTGACTTCGGGAG	.	53	4	57	0	T|0.873;C|0.127	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179512177	179512177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TTN-636	NM_001267550	exon214	c.G40072T	p.E13358X	TTTTCTCAGGCAC	.	90	29	131	0	.	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	168	6	202	1	.	497	496	0	1	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	148	7	146	0	.	2	2	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	.	.	.	.	CCATCGCGGCCAC	.	77	4	13	0	.	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	.	.	.	.	CTGCAGCCTTCCT	.	76	6	14	0	.	0	0	0	0	0
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31996515	31996515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SNTA1-91	NM_003098	exon7	c.G1417A	p.G473S	TCTCGCCTTCAGC	.	243	102	235	0	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	6	0	0	C|0.769;T|0.231	0	0	0	0	0
KRTAP10-2	386679	ucsc.edu	37	21	45971225	45971225	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KRTAP10-2-135	NM_198693	exon1	c.A117G	p.P39P	GGGGGCTGGGGCA	.	68	9	18	1	.	0	0	0	0	0
DYNC1LI1	51143	bcgsc.ca	37	3	32578505	32578505	+	Missense_Mutation	SNP	T	T	C	rs2303857	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DYNC1LI1-91	NM_016141	exon6	c.A830G	p.Q277R	ATACACTGTAAAC	.	99	7	154	2	T|0.935;C|0.065	0	0	0	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755730	49755730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	AMIGO3-91	NM_198722	exon1	c.G1169T	p.G390V	GCACAGCCCAGCA	.	120	13	47	3	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	4	4	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260630	126260630	+	Missense_Mutation	SNP	A	A	G	rs12495696	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CHST13-90	NM_152889	exon3	c.A235G	p.S79G	CTGAACAGCGCCT	.	11	10	0	0	A|0.936;G|0.064	0	0	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54439911	54439911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.T259A	p.C87S	TCTTGCAGTGCTG	.	236	90	243	0	.	0	0	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54440019	54440019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.C151T	p.P51S	CCAGGGGGTCCAG	.	183	83	206	0	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	500	0	671	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537249	88537249	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DSPP-90	NM_014208	exon5	c.T3435C	p.S1145S	CAGCAGTGACAGC	.	564	33	835	24	.	0	0	0	0	0
SPP1	6696	bcgsc.ca	37	4	88902692	88902692	+	Silent	SNP	T	T	C	rs4754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SPP1-555	NM_001251830	exon7	c.T321C	p.D107D	TGATGATGACCAT	.	225	9	223	2	T|0.713;C|0.287	187	186	0	0	1
OSMR	9180	broad.mit.edu;bcgsc.ca	37	5	38876350	38876350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OSMR-496	NM_001168355	exon3	c.A121G	p.T41A	GTTTCCACCAATT	.	422	24	245	2	.	3	3	0	0	0
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	56224609	56224609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MIER3-90	NM_152622	exon10	c.906delT	p.L302fs	CTGTATAAGATGA	.	185	45	131	0	.	0	0	0	0	0
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SHROOM1-91	NM_133456	exon1	c.C898A	p.P300T	TGGCGGGCCTGAA	.	109	6	72	0	.	1	1	0	0	0
MATR3	9782	bcgsc.ca	37	5	138661351	138661351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MATR3-91	NM_018834	exon13	c.G2371C	p.G791R	CCTGTTGGTGAGA	.	367	10	245	0	.	8	2	6	0	0
DND1	373863	ucsc.edu	37	5	140052407	140052407	+	Missense_Mutation	SNP	G	G	A	rs75523379		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DND1-90	NM_194249	exon3	c.C227T	p.P76L	AACAGCGGGATAA	.	50	6	11	0	.	0	0	0	0	0
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182624	140182624	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PCDHA3-98	NM_031497	exon1	c.G1842T	p.G614G	GCCTGGGACCGGC	.	368	80	50	0	.	0	0	0	0	0
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160025960	160025960	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ATP10B-72	NM_025153	exon22	c.C3381T	p.L1127L	CCAGAAGAGCAGG	.	168	88	95	0	.	0	0	0	0	0
CDHR2	54825	broad.mit.edu;bcgsc.ca	37	5	175995994	175995994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CDHR2-70	NM_017675	exon5	c.A298G	p.S100G	TCCGTGAGCGACC	.	107	40	73	2	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	5	5	0	0	A|0.006;G|0.994	0	0	0	0	0
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	107391692	107391692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	BEND3-71	NM_001080450	exon5	c.G703A	p.E235K	CCATCTCAGTGGG	.	206	16	162	0	.	0	0	0	0	0
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139189242	139189242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ECT2L-22	NM_001195037	exon12	c.C1477A	p.Q493K	ACAGGGCAGTTTA	.	176	22	183	0	.	0	0	0	0	0
CPVL	54504	broad.mit.edu;bcgsc.ca	37	7	29135786	29135786	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CPVL-92	NM_019029	exon4	c.G336A	p.P112P	ACCTCCCGGCCCA	.	202	10	122	1	.	7	7	0	0	0
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101758537	101758537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CUX1-160	NM_181500	exon8	c.G691A	p.E231K	TACGATGAAGAAA	.	153	24	120	0	.	26	24	2	0	0
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_020322	exon1	c.C108A	p.G36G	GCCAGGCAGCCTG	.	89	13	18	0	.	0	0	0	0	0
PRKAG2	51422	ucsc.edu;bcgsc.ca	37	7	151261307	151261307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PRKAG2-658	NM_016203	exon14	c.C1441A	p.L481I	CAGCAAGATTCTG	.	164	82	138	3	.	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	9	9	0	0	G|0.907;A|0.093	0	0	0	0	0
SLC35G5	83650	bcgsc.ca	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C	rs76944947	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_054028	exon1	c.T307C	p.W103R	CGAGGCTGGGCCT	.	194	15	207	3	T|0.975;C|0.025	0	0	0	0	0
XPO7	23039	bcgsc.ca	37	8	21846586	21846586	+	Silent	SNP	G	G	C	rs2306646	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	XPO7-273	NM_015024	exon16	c.G1860C	p.L620L	TGACCTGTCCATT	.	125	6	125	0	G|0.404;C|0.596	0	0	0	0	0
XPO7	23039	bcgsc.ca	37	8	21862551	21862551	+	Silent	SNP	A	A	G	rs1058486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	XPO7-273	NM_015024	exon28	c.A3216G	p.S1072S	CGACTCAATGAAG	.	109	7	120	2	A|0.407;G|0.593	25	25	0	0	0
PLAT	5327	broad.mit.edu	37	8	42044953	42044953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PLAT-226	NM_000930	exon6	c.G502T	p.A168S	TGATGGCGTCTGG	.	28	4	19	0	.	1	1	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	8	8	0	0	C|0.895;A|0.105	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	6	4	0	0	C|0.731;T|0.269	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	6	6	0	0	A|0.096;C|0.904	0	0	0	0	0
KLF4	9314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	110251263	110251293	+	Frame_Shift_Del	DEL	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KLF4-651	NM_004235	exon2	c.44_74del	p.15_25del	GGGCCAGACGCGA	.	171	11	247	0	.	0	0	0	0	0
EPB41L4B	54566	hgsc.bcm.edu	37	9	112082492	112082492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EPB41L4B-92	NM_019114	exon1	c.G235T	p.G79C	CGGCGCCGGCGGC	.	57	47	1	0	.	0	0	0	0	0
ENTPD8	377841	broad.mit.edu	37	9	140329710	140329710	+	Missense_Mutation	SNP	G	G	T	rs202080880	alternate_allele	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ENTPD8-91	NM_001033113	exon9	c.C1242A	p.H414Q	GCCCTCGTGCAGG	.	107	4	76	0	G|0.999;A|0.000	0	0	0	0	0
BCYRN1	618	bcgsc.ca	37	X	70517791	70517791	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	.	.	.	.	TGCGGTATATCTC	.	288	224	258	3	.	63	1	62	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_001145051	exon2	c.420_421insGAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	p.R140delinsRERQHEVVMEQLQR	GCAGCGGGAGCGG	.	178	0	89	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	55	0	12	0	.	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_203403	exon1	c.147_148insGGCGGCGGC	p.G49delinsGGGG	TGGTGGTGGCGGC	.	26	11	17	0	.	0	0	0	0	0
C14orf23	387978	bcgsc.ca	37	14	29261244	29261245	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	C14orf23-23	.	.	.	p.G94V	TTTGGGGAAGAAC	.	206	24	148	0	.	0	0	0	0	0