Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ATAD3B	83858	bcgsc.ca	37	1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T	rs9792879		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ATAD3B-44	NM_031921	exon16	c.C1915T	p.P639S	GGTCGGCCGTTCT	.	45	4	63	0	C|0.782;T|0.218	0	0	0	0	0
ARHGEF16	27237	bcgsc.ca	37	1	3395039	3395039	+	Silent	SNP	G	G	A	rs10797395	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ARHGEF16-228	NM_014448	exon12	c.G1677A	p.V559V	CCAGGTGGAGAAG	.	602	13	726	5	G|0.281;A|0.719	0	0	0	0	0
AMPD2	271	bcgsc.ca	37	1	110170896	110170896	+	Silent	SNP	T	T	C	rs863978	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	AMPD2-292	NM_001257360	exon11	c.T1434C	p.H478H	TGTGCATGCGGTC	.	148	6	147	1	T|0.265;C|0.735	0	0	0	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859428	149859428	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	HIST2H2AB-154	NM_175065	exon1	c.T39C	p.A13A	GGCCTTAGCGCGG	.	117	5	104	0	.	0	0	0	0	0
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153309754	153309754	+	Silent	SNP	G	G	A	rs184556258		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PGLYRP4-94	NM_020393	exon8	c.C846T	p.G282G	AATGGCGCCATCC	.	63	56	66	1	G|0.999;A|0.000	0	0	0	0	0
DNAJC12	56521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69571291	69571291	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	DNAJC12-658	NM_021800	exon3	c.A288C	p.S96S	CTTCACTGAGTCA	.	149	49	170	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115982440	115982440	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TDRD1-90	NM_198795	exon21	c.C2985T	p.D995D	TGGAGACGCATGC	.	47	6	71	0	.	0	0	0	0	0
USH1C	10083	broad.mit.edu	37	11	17542909	17542909	+	Missense_Mutation	SNP	G	G	A	rs140934960		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	USH1C-91	NM_005709	exon13	c.C1069T	p.R357W	CCTTCCGGTATCT	.	125	4	134	1	G|1.000;A|0.000	0	0	0	0	0
TCP11L1	55346	bcgsc.ca	37	11	33065394	33065394	+	Silent	SNP	C	C	T	rs1064005	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TCP11L1-90	NM_001145541	exon2	c.C75T	p.L25L	AGGCCTCGAAGAT	.	76	5	106	0	C|0.583;T|0.417	0	0	0	0	0
LRP5	4041	bcgsc.ca	37	11	68174122	68174122	+	Silent	SNP	G	G	A	rs2277268	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	LRP5-661	NM_002335	exon9	c.G1932A	p.E644E	GCCTGAGGCCTTC	.	97	5	139	2	G|0.935;A|0.065	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	INPPL1-660	NM_001567	exon27	c.C3554A	p.A1185D	CTTAGGCTCCGTG	.	56	9	26	1	.	0	0	0	0	0
KCNA6	3742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KCNA6-93	NM_002235	exon1	c.G529A	p.A177T	GGCATCGCCATCG	.	244	50	132	1	.	0	0	0	0	0
FAM186A	121006	hgsc.bcm.edu	37	12	50745756	50745863	+	In_Frame_Del	DEL	GCCTGCTGAGGGGTGAGAGGGATCCCCTGAGCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGC	GCCTGCTGAGGGGTGAGAGGGATCCCCTGAGCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGC	-	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCCTGCTGAGGGGTGAGAGGGATCCCCTGAGCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGC	GCCTGCTGAGGGGTGAGAGGGATCCCCTGAGCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGCGCCTGCTGAGGGGTGAGAGGGATCCCCAGTTCCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FAM186A-68	NM_001145475	exon4	c.4752_4859del	p.1584_1620del	GCCTGGGCCTGCT	.	294	0	212	0	.	0	0	0	0	0
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54857074	54857074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	GTSF1-90	NM_144594	exon4	c.C125A	p.P42H	ACATCAGGATGAT	.	165	86	103	0	.	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	35	16	8	0	.	0	0	0	0	0
F7	2155	bcgsc.ca	37	13	113770068	113770068	+	Silent	SNP	C	C	T	rs6042	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	F7-90	NM_000131	exon6	c.C525T	p.H175H	GTGCCACGAGGGG	.	92	5	185	1	C|0.876;T|0.124	0	0	0	0	0
OR11H12	440153	bcgsc.ca	37	14	19378496	19378496	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	OR11H12-24	NM_001013354	exon1	c.T903C	p.N301N	CTTCAATCCCCTT	.	392	61	419	3	.	0	0	0	0	0
KIF26A	26153	bcgsc.ca	37	14	104643409	104643409	+	Silent	SNP	A	A	G	rs2487303	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KIF26A-24	NM_015656	exon12	c.A4284G	p.A1428A	AGAAGCAGCACAC	.	14	14	8	1	A|0.242;G|0.758	0	0	0	0	0
KIF26A	26153	bcgsc.ca	37	14	104643421	104643421	+	Silent	SNP	T	T	C	rs2487302	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KIF26A-24	NM_015656	exon12	c.T4296C	p.L1432L	CCGTCTTGCCGGA	.	13	13	8	1	T|0.569;C|0.431	0	0	0	0	0
DNAJA4	55466	bcgsc.ca	37	15	78567960	78567960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	DNAJA4-226	NM_018602	exon6	c.G854T	p.G285V	GACGAGGCCATGA	.	136	5	137	1	.	0	0	0	0	0
MIR662	724032	bcgsc.ca	37	16	820944	820944	+	Missense_Mutation	SNP	T	T	A	rs12599363	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	.	.	.	.	GAGAGGTCCAGGG	.	154	6	99	0	T|0.765;A|0.235	0	0	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	9	6	0	0	C|0.923;G|0.077	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	7	7	0	0	C|0.615;G|0.385	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_031960	exon1	c.T283A	p.C95S	AGATGCAGCAGCT	.	161	16	142	4	A|0.500;T|0.500	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305769	39305769	+	Missense_Mutation	SNP	G	G	C	rs151111061		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.C251G	p.T84S	CAGCAGGTGGTCT	.	78	24	83	0	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	79	24	77	0	.	0	0	0	0	0
KRTAP4-5	85289	ucsc.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.T235A	p.C79S	AGCAGCAGGGGCG	.	85	36	61	2	A|0.354;T|0.646	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	88	9	63	0	.	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	5	5	2	0	A|0.476;G|0.524	0	0	0	0	0
PLEKHM1	9842	bcgsc.ca	37	17	43552921	43552921	+	Silent	SNP	C	C	T	rs12452273	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PLEKHM1-90	NM_014798	exon4	c.G468A	p.R156R	AGCATCCCGGAGC	.	260	9	323	4	C|0.865;T|0.135	0	0	0	0	0
ABCA6	23460	bcgsc.ca	37	17	67081276	67081276	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ABCA6-159	NM_080284	exon32	c.C4077A	p.C1359X	TTGAGGGCAGTAC	.	64	4	53	0	.	0	0	0	0	0
FAM104A	84923	broad.mit.edu	37	17	71205699	71205699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001098832	exon4	c.G593T	p.S198I	TGTAGGCTGTGGA	.	72	8	74	2	.	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	28	25	1	0	C|0.850;T|0.150	0	0	0	0	0
B3GNTL1	146712	hgsc.bcm.edu	37	17	81009622	81009622	+	Silent	SNP	C	C	T	rs59686903	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.G51A	p.Q17Q	GTGGGCCTGCATG	.	5	5	8	0	C|0.880;T|0.120	0	0	0	0	0
B3GNTL1	146712	hgsc.bcm.edu	37	17	81009636	81009636	+	Missense_Mutation	SNP	T	T	G	rs57923322	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.A37C	p.S13R	CCTGGCTCTCCTC	.	5	5	8	0	T|0.786;G|0.214	0	0	0	0	0
SOGA2	23255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8826196	8826196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_015210	exon15	c.C4688T	p.S1563L	GCCACTCGCTGGG	.	110	98	95	1	.	0	0	0	0	0
ANKRD20A5P	440482	bcgsc.ca	37	18	14183680	14183680	+	RNA	SNP	G	G	A	rs75090388	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ANKRD20A5P-90	.	.	.	.	CCAGTGGCCATGT	.	195	42	148	8	G|0.300;A|0.700	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	10	10	0	0	C|0.390;A|0.610	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	5	5	0	0	C|0.780;G|0.220	0	0	0	0	0
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16861150	16861150	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NWD1-7	NM_001007525	exon6	c.T1697A	p.L566H	ACCAACTCTGCAC	.	82	34	63	0	.	0	0	0	0	0
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36611666	36611666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TBCB-90	NM_001281	exon3	c.G313A	p.E105K	CGGGTGGAGAAGT	.	173	67	106	0	.	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu	37	19	41173886	41173886	+	Silent	SNP	C	C	T	rs62640392		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.G1317A	p.Q439Q	CTGCTGCTGCTGC	.	99	12	74	0	C|0.984;T|0.016	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu	37	19	41173898	41173898	+	Silent	SNP	T	T	C	rs79747129		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.A1305G	p.Q435Q	CTGCTGTTGCTGT	.	92	23	61	0	.	0	0	0	0	0
NUMBL	9253	mdanderson.org	37	19	41173904	41173904	+	Silent	SNP	T	T	C	rs79658769		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.A1299G	p.Q433Q	TTGCTGTTGCTGC	.	89	24	65	1	C|1.000;|0.000	0	0	0	0	0
MARK4	57787	broad.mit.edu	37	19	45783864	45783864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MARK4-782	NM_001199867	exon12	c.C1148A	p.A383D	GGCTGGCCCTGGC	.	237	21	112	4	.	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	12	10	9	0	A|0.464;G|0.536	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	8	8	0	0	A|0.270;G|0.730	0	0	0	0	0
EFR3B	22979	broad.mit.edu	37	2	25359422	25359422	+	Silent	SNP	G	G	A	rs3731631	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_014971	exon14	c.G1515A	p.L505L	GAAGCTGAAAGTG	.	76	4	92	0	G|0.664;A|0.335	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
WDR33	55339	broad.mit.edu	37	2	128471416	128471416	+	Missense_Mutation	SNP	C	C	G	rs145331578	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	WDR33-90	NM_018383	exon18	c.G3049C	p.D1017H	AGTCATCTGGTCT	.	96	3	111	2	C|1.000;G|0.000	0	0	0	0	0
TLK1	9874	bcgsc.ca	37	2	171850329	171850329	+	Silent	SNP	T	T	G	rs3731993	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TLK1-439	NM_012290	exon21	c.A2262C	p.A754A	AGGGGATGCTGTC	.	181	6	208	0	T|0.951;G|0.049	0	0	0	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3210295	3210318	+	In_Frame_Del	DEL	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SLC4A11-91	NM_001174090	exon14	c.1723_1746del	p.575_582del	GAGGAAGCTGGCG	.	148	45	74	0	.	0	0	0	0	0
LAMP5	24141	bcgsc.ca	37	20	9496716	9496716	+	Missense_Mutation	SNP	C	C	G	rs2232264	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_012261	exon3	c.C307G	p.Q103E	CACAGCCAGTCGG	.	325	9	196	3	C|0.731;G|0.269	0	0	0	0	0
SON	6651	hgsc.bcm.edu	37	21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SON-97	NM_138927	exon12	c.G7235A	p.G2412E	GAAATGGAGCCCT	.	67	2	33	0	.	0	0	0	0	0
PCNT	5116	bcgsc.ca	37	21	47851796	47851796	+	Silent	SNP	G	G	A	rs9983522	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PCNT-141	NM_006031	exon38	c.G8418A	p.A2806A	GCAAGCGATGCTT	.	130	6	70	0	G|0.887;A|0.113	0	0	0	0	0
MYH9	4627	broad.mit.edu	37	22	36702092	36702092	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MYH9-292	NM_002473	exon17	c.C2043A	p.G681G	CAGCTTGCCGGCC	.	79	7	101	4	.	0	0	0	0	0
SH3BP1	23616	hgsc.bcm.edu	37	22	38051355	38051355	+	Silent	SNP	G	G	A	rs762989		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SH3BP1-90	NM_018957	exon18	c.G1770A	p.P590P	AGCCCCGCCCTTG	.	16	14	3	0	G|0.825;A|0.175	0	0	0	0	0
TTLL12	23170	bcgsc.ca	37	22	43579049	43579049	+	Missense_Mutation	SNP	T	T	C	rs13058467	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TTLL12-90	NM_015140	exon2	c.A284G	p.N95S	AGCTCGTTCCCCG	.	116	7	133	1	T|0.917;C|0.083	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	137	45	160	0	.	0	0	0	0	0
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48420011	48420011	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FBXW12-226	NM_207102	exon6	c.C610T	p.L204L	CCATTCCTGATGG	.	83	29	97	0	.	0	0	0	0	0
WDR6	11180	broad.mit.edu	37	3	49050036	49050036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	WDR6-90	NM_018031	exon2	c.G1159T	p.A387S	ACTCTGGCTGGCT	.	99	4	88	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	6	6	0	0	T|0.412;A|0.588	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	355	24	429	27	G|0.998;A|0.002	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	116	7	20	0	T|0.980;C|0.020	0	0	0	0	0
ANTXR2	118429	bcgsc.ca	37	4	80898808	80898808	+	Silent	SNP	C	C	T	rs35798108	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ANTXR2-23	NM_001145794	exon16	c.G1395A	p.R465R	AGAAACCCGGTCA	.	159	7	85	0	C|0.936;T|0.064	0	0	0	0	0
KLHL8	57563	broad.mit.edu	37	4	88106900	88106900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KLHL8-90	NM_020803	exon3	c.C268T	p.P90S	AGTAGGGAATAAC	.	166	18	84	1	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	5	5	0	0	T|0.046;G|0.950	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	12	12	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140230462	140230462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PCDHA9-138	NM_031857	exon1	c.T2382G	p.D794E	CTCAGATTCAACT	.	334	154	182	0	.	0	0	0	0	0
ATXN1	6310	mdanderson.org	37	6	16327912	16327912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ATXN1-93	NM_001128164	exon7	c.G630T	p.Q210H	CTGATGCTGATGC	.	35	12	53	1	.	0	0	0	0	0
ITPR3	3710	bcgsc.ca	37	6	33653486	33653486	+	Missense_Mutation	SNP	G	G	A	rs12528378	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ITPR3-1085	NM_002224	exon41	c.G5549A	p.R1850Q	TGCGCCGGGGGCA	.	228	11	250	3	G|0.935;A|0.065	0	0	0	0	0
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132910157	132910157	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TAAR5-91	NM_003967	exon1	c.T669C	p.F223F	AACCACAAAGATC	.	75	27	99	0	.	0	0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146755630	146755632	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	GRM1-1080	NM_000838	exon9	c.3283_3285del	p.1095_1095del	CCCGCGGACGACG	.	195	7	146	0	.	0	0	0	0	0
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147054299	147054299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_024694	exon21	c.T2564C	p.I855T	TTCAAATAACAAA	.	35	12	52	0	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	4	4	0	0	G|0.492;C|0.508	0	0	0	0	0
BCL7B	9275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72952314	72952314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	BCL7B-228	NM_001707	exon5	c.G466T	p.D156Y	GTTCATCAGCAAC	.	197	62	187	1	.	0	0	0	0	0
MKLN1	4289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131084167	131084167	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MKLN1-135	NM_013255	exon6	c.A678G	p.E226E	TTGCGAAGAGTTG	.	154	47	140	2	.	0	0	0	0	0
CPNE3	8895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87560662	87560662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CPNE3-117	NM_003909	exon12	c.C1013T	p.A338V	ATGATGCGTGAGT	.	117	28	119	0	.	0	0	0	0	0
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	8	95690599	95690599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ESRP1-94	NM_017697	exon13	c.G1820T	p.S607I	ATCCCAGGTAAGG	.	62	4	57	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	22	8	5	0	A|0.118;G|0.882	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649601	144649601	+	Silent	SNP	A	A	G	rs13268196		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001100878	exon14	c.T1968C	p.A656A	GGCCACAGCCGGC	.	5	5	0	0	A|0.057;G|0.943	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	5	5	0	0	G|0.108;T|0.892	0	0	0	0	0
SPATA31E1	286234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90500470	90500470	+	Missense_Mutation	SNP	C	C	A	rs62578207	alternate_allele	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_178828	exon4	c.C1068A	p.F356L	CACATTCATCCAC	.	82	29	84	1	.	0	0	0	0	0
PBX3	5090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128724400	128724400	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PBX3-91	NM_006195	exon7	c.C1029T	p.N343N	TTTTAACCTCCCA	.	63	11	62	0	.	0	0	0	0	0
CD99	4267	bcgsc.ca	37	X	2644302	2644302	+	Silent	SNP	C	C	T	rs200217367		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CD99-40	NM_002414	exon8	c.C363T	p.A121A	TGCAGCCGACGCC	.	162	7	211	0	.	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994913	140994913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.C1723A	p.L575M	GACTCCCTGTCTC	.	47	33	98	4	.	0	0	0	0	0
MAGEC1	9947	ucsc.edu;bcgsc.ca	37	X	140994923	140994923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.A1733T	p.H578L	CTCCTCACTACTT	.	34	18	104	1	.	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994939	140994939	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.C1749T	p.S583S	TCAGAGCCCTCAG	.	26	5	122	0	.	0	0	0	0	0
IRAK1	3654	bcgsc.ca	37	X	153284192	153284192	+	Missense_Mutation	SNP	A	A	G	rs1059702	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	IRAK1-1074	NM_001569	exon5	c.T587C	p.F196S	AACGGAAAGGGGC	.	389	9	427	5	0|0.003;T|0.067	0	0	0	0	0
CTBP2	1488	hgsc.bcm.edu	37	10	126715159	126715160	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CTBP2-90	NM_022802	exon1	c.1170_1171insCCTGCAGCCCCAGCCTGCGGC	p.A390delinsALQPQPAA	CAGAGGAGCCGCA	.	55	6	51	2	.	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	TGCTGCCAGCCTT	.	113	0	154	0	.	0	0	0	0	0