Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	4	4	0	0	C|0.430;A|0.570	0	0	0	0	0
KIAA1522	57648	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235634	33235634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KIAA1522-90	NM_020888	exon6	c.G854C	p.G285A	AGGCTGGCGCTGA	.	179	72	103	1	.	0	0	0	0	0
GJA4	2701	bcgsc.ca	37	1	35260769	35260769	+	Missense_Mutation	SNP	C	C	T	rs1764391	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GJA4-90	NM_002060	exon2	c.C955T	p.P319S	CAAAAACCCCCAA	.	44	4	45	0	C|0.634;T|0.366	12	12	0	0	0
HECTD3	79654	hgsc.bcm.edu	37	1	45476663	45476663	+	Silent	SNP	G	G	A	rs2298005	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HECTD3-658	NM_024602	exon1	c.C267T	p.L89L	GGCGCGGAGGGGC	.	9	7	0	0	G|0.756;A|0.244	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	23	6	4	0	T|0.861;C|0.139	2	2	0	0	0
SEMA6C	10500	hgsc.bcm.edu;bcgsc.ca	37	1	151105831	151105831	+	Missense_Mutation	SNP	T	T	C	rs146921438	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SEMA6C-92	NM_001178061	exon20	c.A2018G	p.E673G	GGAGTCTCGATGT	.	66	56	14	0	T|0.996;C|0.004	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	1	0	1	0	0
FCRL5	83416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157494069	157494069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FCRL5-156	NM_031281	exon10	c.G2239T	p.V747F	ACTCACCTGCAAC	.	301	108	273	1	.	0	0	0	0	0
CD1A	909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158224992	158224992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CD1A-93	NM_001763	exon2	c.C177A	p.S59R	GGACAGCAATTCC	.	187	128	224	1	.	0	0	0	0	0
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196227367	196227367	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KCNT2-159	NM_198503	exon26	c.G3168A	p.V1056V	ATTTTTCACAAGT	.	47	17	46	0	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	31	31	0	0	C|0.242;T|0.758	0	0	0	0	0
CAPN2	824	bcgsc.ca	37	1	223905532	223905532	+	Silent	SNP	G	G	A	rs17596	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CAPN2-523	NM_001748	exon2	c.G306A	p.L102L	AGCCCTGGGTAAG	.	154	7	113	1	G|0.359;A|0.641	0	0	0	0	0
TFAM	7019	bcgsc.ca	37	10	60145342	60145342	+	Missense_Mutation	SNP	G	G	C	rs1937	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TFAM-90	NM_003201	exon1	c.G35C	p.S12T	TGCTGAGTGCCCT	.	104	4	62	0	G|0.919;C|0.081	20	20	0	0	0
PLAC9	219348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81904035	81904035	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PLAC9-90	NM_001012973	exon3	c.G219C	p.L73L	GGGCCTGCTGGAG	.	75	29	47	0	.	61	61	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	7	7	0	0	C|0.154;G|0.846	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	42	42	0	0	C|0.339;G|0.661	0	0	0	0	0
CNNM2	54805	hgsc.bcm.edu	37	10	104678350	104678350	+	Missense_Mutation	SNP	G	G	A	rs76057237	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CNNM2-515	NM_199076	exon1	c.G113A	p.R38Q	GCGGCCGGGGGAT	.	13	11	1	0	G|0.964;A|0.036	4	3	1	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219066	134219066	+	Silent	SNP	G	G	C	rs76595411	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	33	13	1	0	G|0.955;C|0.045	55	37	18	0	0
NLRP6	171389	hgsc.bcm.edu	37	11	280673	280673	+	Silent	SNP	C	C	T	rs12807092		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NLRP6-583	NM_138329	exon4	c.C939T	p.S313S	GCTGAGCAAGGCG	.	7	7	0	0	C|0.479;T|0.521	0	0	0	0	0
LRRC56	115399	bcgsc.ca	37	11	554018	554018	+	Silent	SNP	G	G	A	rs112033363	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	LRRC56-91	NM_198075	exon14	c.G1371A	p.R457R	CCCAAGGCCACGA	.	112	5	77	0	G|0.939;A|0.061	2	2	0	0	0
EPS8L2	64787	broad.mit.edu	37	11	726471	726471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	EPS8L2-91	NM_022772	exon19	c.G1921T	p.A641S	GCCAAGGCCTTCA	.	76	6	15	1	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MUC2-90	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	64	8	71	0	.	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64572613	64572613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MEN1-3017	NM_130800	exon9	c.C1258T	p.R420X	AGAATCGCAGCAG	.	92	68	140	1	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	13	13	0	0	G|0.005;C|0.995	126	0	126	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	29	27	0	0	C|0.921;T|0.079	0	0	0	0	0
FGF4	2249	hgsc.bcm.edu	37	11	69589556	69589556	+	Silent	SNP	G	G	A	rs11600280	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FGF4-1270	NM_002007	exon1	c.C297T	p.L99L	GTCGGGGAGCGCC	.	6	6	0	0	G|0.967;A|0.033	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	28	28	1	0	.	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	10	10	0	0	A|0.133;G|0.867	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	172	6	70	1	.	1	1	0	0	0
LRIG3	121227	hgsc.bcm.edu	37	12	59313936	59313936	+	Silent	SNP	T	T	G	rs61754220	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	LRIG3-229	NM_153377	exon1	c.A81C	p.S27S	GCTGTCTGACCGG	.	24	10	0	0	T|0.908;G|0.092	1	1	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	16	15	0	0	.	0	0	0	0	0
TNFSF11	8600	hgsc.bcm.edu	37	13	43148546	43148546	+	Missense_Mutation	SNP	C	C	G	rs138818878		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TNFSF11-522	NM_003701	exon1	c.C107G	p.P36R	CGCCGCCTGCGCC	.	11	9	1	0	C|0.981;G|0.019	0	0	0	0	0
ZC3H13	23091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46542982	46542982	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZC3H13-92	NM_015070	exon14	c.A3697T	p.R1233X	TATCTCTTGAGCC	.	126	40	92	0	.	7	4	3	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53421432	53421432	+	Silent	SNP	C	C	A	rs3742300	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PCDH8-153	NM_002590	exon1	c.G1140T	p.G380G	CGCTCCCCCGAGT	.	5	5	0	0	C|0.649;A|0.351	0	0	0	0	0
COL4A1	1282	bcgsc.ca	37	13	110833702	110833702	+	Silent	SNP	C	C	T	rs16975492	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	COL4A1-654	NM_001845	exon29	c.G2130A	p.P710P	AGTCCCCGGTGGC	.	177	8	225	1	C|0.691;T|0.309	61	61	0	0	0
COL4A1	1282	hgsc.bcm.edu	37	13	110959356	110959356	+	Missense_Mutation	SNP	C	C	G	rs9515185		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	COL4A1-654	NM_001845	exon1	c.G19C	p.V7L	GCCAGACGCTGAG	.	4	4	0	0	C|0.560;G|0.440	3	2	1	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	11	11	0	0	C|0.372;T|0.628	1	0	1	0	0
SOX1	6656	bcgsc.ca;mdanderson.org	37	13	112722101	112722101	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SOX1-468	NM_005986	exon1	c.C129A	p.G43G	CGGGGGCGCCAAG	.	51	39	38	1	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	62	5	16	0	.	22	22	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF219-90	NM_001102454	exon3	c.698_703del	p.233_235del	GGGGTGGAGGCTG	.	43	23	4	2	.	0	0	0	0	0
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	38679311	38679311	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SSTR1-947	NM_001049	exon3	c.C717A	p.I239I	GGCTATCTGCCTG	.	133	40	140	0	.	0	0	0	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493809	77493809	+	Silent	SNP	C	C	T	rs61991638	byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	IRF2BPL-90	NM_024496	exon1	c.G327A	p.Q109Q	CTGCTGCTGCTGT	.	13	10	4	0	C|0.978;T|0.022	5	3	2	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	12	11	0	0	T|0.603;C|0.397	5	0	5	0	0
EXD1	161829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41501767	41501767	+	Missense_Mutation	SNP	G	G	T	rs113822955	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	EXD1-91	NM_152596	exon5	c.C292A	p.Q98K	CATTCTGCTTCTT	.	132	88	136	0	G|0.500;A|0.500	0	0	0	0	0
IGDCC4	57722	hgsc.bcm.edu	37	15	65688236	65688236	+	Silent	SNP	G	G	T	rs145183412	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	IGDCC4-93	NM_020962	exon7	c.C1263A	p.A421A	CACCACGGCCAGC	.	43	12	2	0	G|0.998;T|0.002	1	1	0	0	0
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88678334	88678334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NTRK3-3538	NM_001243101	exon10	c.C1202A	p.P401Q	TCACCTGGAAAGG	.	212	83	257	0	.	0	0	0	0	0
NTRK3	4916	bcgsc.ca	37	15	88680684	88680684	+	Silent	SNP	G	G	A	rs1128994	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NTRK3-3538	NM_001243101	exon7	c.C573T	p.N191N	ATCAGCGTTGATG	.	163	6	132	0	G|0.705;A|0.295	1	1	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	11	8	0	0	C|0.923;G|0.077	23	6	17	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	9	9	0	0	T|0.007;C|0.993	6	0	6	0	0
FTO	79068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53860242	53860242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FTO-68	NM_001080432	exon3	c.C590T	p.A197V	GCAGAGCAGCATA	.	277	90	240	0	.	5	3	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	15	15	0	0	T|0.035;G|0.004	1	0	1	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	20	14	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	20	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	16	14	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	16	14	0	0	.	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	13	12	0	0	C|0.015;A|0.985	0	0	0	0	0
TP53	7157	bcgsc.ca	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TP53-70225	NM_000546	exon5	c.G404A	p.C135Y	AGTTGGCAAAACA	.	106	76	79	2	.	28	1	27	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	8	7	0	0	G|0.505;A|0.495	1	0	1	0	0
GOSR2	9570	bcgsc.ca	37	17	45008570	45008570	+	Missense_Mutation	SNP	G	G	A	rs197922	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GOSR2-92	NM_001012511	exon3	c.G200A	p.R67K	ATGCCAGACTGTA	.	247	7	255	3	G|0.674;A|0.326	2	2	0	0	0
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368576	72368576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GPR142-93	NM_181790	exon4	c.C1226G	p.A409G	CGGCAGCCAACTT	.	137	35	99	0	.	0	0	0	0	0
RNF213	57674	bcgsc.ca	37	17	78346830	78346830	+	Silent	SNP	G	G	A	rs116948489	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RNF213-577	NM_001256071	exon49	c.G12807A	p.R4269R	TATCCGGGTGGAG	.	133	6	142	1	G|0.958;A|0.042	5	5	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	24	19	0	0	T|0.767;C|0.233	0	0	0	0	0
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417313	70417313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NETO1-94	NM_001201465	exon9	c.G1525A	p.D509N	CTTTATCGTGTCT	.	46	17	48	0	.	0	0	0	0	0
ZNF516	9658	bcgsc.ca	37	18	74090864	74090864	+	Missense_Mutation	SNP	A	A	G	rs140499406	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF516-69	NM_014643	exon5	c.T3205C	p.F1069L	TCGCAAAGTCCTT	.	94	5	86	0	A|0.994;G|0.006	2	2	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	6	6	0	0	C|0.780;G|0.220	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	4	4	0	0	T|0.495;C|0.504	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	11	11	0	0	A|0.114;G|0.886	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	15	4	0	0	G|0.749;A|0.251	26	26	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	16	4	0	0	T|0.403;C|0.597	25	25	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912817	1912817	+	Silent	SNP	C	C	T	rs35870594	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ADAT3-154	NM_138422	exon2	c.C771T	p.Y257Y	CACCTACGACTTC	.	17	7	0	0	C|0.899;T|0.101	2	2	0	0	0
ZNF555	148254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2853644	2853644	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF555-91	NM_152791	exon4	c.G1581C	p.V527V	ACATGTGAGAACG	.	156	40	110	0	.	1	0	1	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600465	3600465	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TBXA2R-90	NM_201636	exon2	c.T168G	p.G56G	GTGCGAACCCCCC	.	203	43	26	2	.	10	10	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	16	12	0	0	A|0.411;G|0.589	1	1	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	13	9	0	0	C|0.769;T|0.231	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9058325	9058325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MUC16-566	NM_024690	exon3	c.C29121A	p.S9707R	ACCCCTGCTCATA	.	301	67	207	0	.	0	0	0	0	0
ZSWIM4	65249	hgsc.bcm.edu	37	19	13941597	13941597	+	Silent	SNP	C	C	T	rs112676900	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZSWIM4-90	NM_023072	exon13	c.C2703T	p.A901A	CCGGGCCGCCAAG	.	44	19	4	0	C|0.927;T|0.073	7	4	3	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	20	8	0	0	C|0.734;A|0.266	29	13	16	0	0
WDR87	83889	broad.mit.edu	37	19	38377392	38377409	+	In_Frame_Del	DEL	CCTCCTCCTCCTCCCTTA	CCTCCTCCTCCTCCCTTA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_031951	exon6	c.6785_6802del	p.2262_2268del	TCCTTTCCTCCTC	.	61	30	36	0	.	0	0	0	0	0
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38905653	38905653	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RASGRP4-660	NM_170604	exon9	c.C1065G	p.L355L	GTCCTTGAGGTGC	.	287	16	139	0	.	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	98	8	26	2	.	28	28	0	0	0
ZNF234	10780	bcgsc.ca	37	19	44660967	44660967	+	Silent	SNP	A	A	G	rs12609635	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_006630	exon6	c.A798G	p.G266G	ATGTGGAAGGGCC	.	162	5	121	0	A|0.448;G|0.552	9	9	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	44	44	0	0	C|0.804;T|0.196	20	0	20	0	0
ZC3H4	23211	hgsc.bcm.edu	37	19	47570199	47570199	+	Missense_Mutation	SNP	G	G	A	rs202213560		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZC3H4-74	NM_015168	exon15	c.C3326T	p.P1109L	CCACTCGGGCTGG	.	25	12	2	0	.	13	10	3	0	0
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965218	48965218	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KCNJ14-91	NM_013348	exon2	c.C237G	p.A79A	GTTCACCACATGC	.	327	69	147	0	.	1	0	1	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	11	10	0	0	G|0.738;A|0.262	66	20	46	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976356	54976356	+	Missense_Mutation	SNP	C	C	T	rs10017		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CDC42EP5-90	NM_145057	exon3	c.G376A	p.G126R	GCGTCCCGGGGCG	.	14	11	1	0	C|1.000;|0.000	1	0	1	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	27	27	0	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384739	58384739	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001144989	exon3	c.T2019C	p.G673G	GAGGTTACCCTTG	.	353	1	226	1	.	12	10	2	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	4	4	0	0	A|0.003;G|0.997	0	0	0	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	284	41	160	2	G|1.000;|0.000	0	0	0	0	0
USP34	9736	bcgsc.ca	37	2	61566536	61566536	+	Silent	SNP	T	T	C	rs17008405	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	USP34-579	NM_014709	exon18	c.A2694G	p.Q898Q	TCGAATTTGTCTA	.	116	5	156	0	T|0.872;C|0.128	2	2	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	10	10	0	0	A|0.029;G|0.971	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	9	8	0	0	G|0.766;T|0.234	0	0	0	0	0
INPP1	3628	bcgsc.ca	37	2	191231458	191231458	+	Silent	SNP	G	G	A	rs11544940	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	INPP1-228	NM_002194	exon4	c.G303A	p.E101E	AGAGGAGGAAACA	.	163	7	174	0	G|0.333;A|0.667	25	25	0	0	0
AQP12A	375318	broad.mit.edu	37	2	241631584	241631584	+	Missense_Mutation	SNP	G	G	T	rs199880904		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	AQP12A-22	NM_198998	exon2	c.G217T	p.V73F	CACGGGGTCACCT	.	196	11	108	3	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	6	6	0	0	C|0.999;T|0.001	1	0	1	0	0
ZNF217	7764	bcgsc.ca	37	20	52193088	52193088	+	Missense_Mutation	SNP	C	C	T	rs6063966	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNF217-723	NM_006526	exon3	c.G2215A	p.V739I	TATGAACGTCAGG	.	128	5	92	0	C|0.859;T|0.141	0	0	0	0	0
POTED	317754	bcgsc.ca	37	21	15011924	15011924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	POTED-74	NM_174981	exon10	c.C1498T	p.Q500X	CAAAAGCAGATAG	.	190	91	167	0	.	0	0	0	0	0
OLIG1	116448	hgsc.bcm.edu	37	21	34443344	34443344	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OLIG1-446	NM_138983	exon1	c.C792A	p.A264A	GGCCGCCGTGCAG	.	28	15	0	0	.	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	37	29	2	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	38	30	2	0	G|0.803;A|0.197	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	10	10	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	10	10	0	0	G|0.826;C|0.174	0	0	0	0	0
MYO18B	84700	bcgsc.ca	37	22	26159289	26159289	+	Missense_Mutation	SNP	G	G	A	rs133885	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MYO18B-142	NM_032608	exon3	c.G131A	p.G44E	TCCGGGGGACTGA	.	85	4	58	0	G|0.307;A|0.693	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29439356	29439372	+	Frame_Shift_Del	DEL	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ZNRF3-69	NM_001206998	exon4	c.571_587del	p.191_196del	ATTAAGCTGATGA	.	45	16	102	0	.	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395503	49395503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GPX1-68	.	.	.	.	ACCAGGCCCCGGG	.	172	12	94	1	.	786	780	6	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0
FRMD4B	23150	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69246086	69246086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FRMD4B-72	NM_015123	exon13	c.C1057A	p.Q353K	GATGCTGACTAAT	.	118	36	152	1	.	1	1	0	0	0
CNTN3	5067	bcgsc.ca	37	3	74413676	74413676	+	Silent	SNP	T	T	C	rs6549590	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CNTN3-137	NM_020872	exon9	c.A1155G	p.Q385Q	TATGCATTGGAAC	.	75	4	122	0	T|0.536;C|0.464	0	0	0	0	0
ARGFX	503582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121289622	121289622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARGFX-93	NM_001012659	exon2	c.C62T	p.S21F	ATTATTCCAACAT	.	303	115	350	1	.	0	0	0	0	0
HEG1	57493	broad.mit.edu;bcgsc.ca	37	3	124746146	124746146	+	Silent	SNP	G	G	A	rs61750908	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HEG1-70	NM_020733	exon3	c.C816T	p.T272T	AGGCGTGGTCAGC	.	200	7	233	1	G|0.997;A|0.003	0	0	0	0	0
COPG1	22820	hgsc.bcm.edu	37	3	128974928	128974928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_016128	exon8	c.C510A	p.S170R	GTGCAGCTTTGAC	.	155	8	131	0	.	61	58	3	0	0
KY	339855	bcgsc.ca	37	3	134322814	134322814	+	Silent	SNP	G	G	C	rs2293294	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KY-24	NM_178554	exon11	c.C1593G	p.G531G	AAACTTGCCTGCA	.	105	5	153	1	G|0.693;C|0.307	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PRR23C-23	NM_001134657	exon1	c.A120C	p.R40R	CGCCGCTCGGGAT	.	16	10	1	0	T|0.848;G|0.152	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	18	10	2	0	C|1.000;|0.000	26	14	12	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	61	10	9	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	66	15	7	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	44	12	5	0	.	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	11	11	0	0	A|0.036;G|0.964	1	0	1	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	6	6	0	0	G|0.440;A|0.560	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	9	7	0	0	T|0.691;C|0.309	0	0	0	0	0
HNRNPD	3184	hgsc.bcm.edu	37	4	83294784	83294784	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HNRNPD-22	NM_031370	exon1	c.G48A	p.T16T	CGCCGCCGTTGCC	.	9	6	1	0	.	32	1	31	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	185340713	185340715	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	IRF2-91	NM_002199	exon3	c.95_97del	p.32_33del	GAAAAATCTTCTT	.	24	13	39	0	.	0	0	0	0	0
TERT	7015	broad.mit.edu;bcgsc.ca	37	5	1253890	1253890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TERT-1272	NM_198253	exon16	c.G3352T	p.A1118S	TGGCTGCGGCCTC	.	271	23	178	1	.	0	0	0	0	0
CCDC125	202243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68599726	68599726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CCDC125-90	NM_176816	exon6	c.G648C	p.E216D	CAAATTCTCTTTG	.	29	8	31	0	.	2	1	1	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	9	8	0	0	G|0.980;C|0.020	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	23	14	0	0	T|0.632;C|0.368	0	0	0	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482256	140482256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PCDHB3-92	NM_018937	exon1	c.G2023A	p.E675K	CTCCCGGAGGCGG	.	160	7	50	0	.	0	0	0	0	0
FAM114A2	10827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153372546	153372546	+	Missense_Mutation	SNP	A	A	G	rs202197693		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	FAM114A2-90	NM_018691	exon14	c.T1508C	p.L503S	TGTTCTAACAAAG	.	115	54	115	1	A|0.999;G|0.001	22	6	16	0	0
RMND5B	64777	bcgsc.ca	37	5	177565255	177565255	+	Silent	SNP	C	C	T	rs61749659	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RMND5B-227	NM_022762	exon3	c.C135T	p.S45S	GGCCAGCGCAGGT	.	182	6	109	0	C|0.977;T|0.023	2	2	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	AGXT2L2-91	NM_153373	exon1	c.G33C	p.T11T	GGCCAGCGTGTCG	.	15	9	0	0	C|0.854;G|0.146	5	3	2	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	6	6	0	0	A|0.006;G|0.994	2	0	2	0	0
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27101075	27101075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HIST1H2AG-68	NM_021064	exon1	c.G225C	p.K75N	CAACAAGAAGACC	.	301	212	242	0	.	4	2	2	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	18	15	0	0	C|0.862;A|0.138	0	0	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324489	31324489	+	Missense_Mutation	SNP	C	C	G	rs3180380	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HLA-B-90	NM_005514	exon2	c.G319C	p.G107R	AGTAGCCGCGCAG	.	21	9	49	0	G|0.370;C|0.630	188	188	0	0	0
SLC44A4	80736	broad.mit.edu	37	6	31842716	31842716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SLC44A4-156	NM_001178044	exon5	c.C332G	p.P111R	GGTGTGGGGCACT	.	79	31	46	2	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	27	12	0	0	G|0.456;C|0.544	0	0	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21778372	21778372	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	DNAH11-146	.	.	.	.	CCTGGAGGAAATA	.	80	23	60	0	.	3	3	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	15	8	0	0	C|0.329;G|0.671	31	9	22	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	17	8	0	0	G|0.760;A|0.240	11	7	4	0	0
ARPC1B	10095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	98988567	98988567	+	Silent	SNP	G	G	A	rs199528626		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	ARPC1B-90	NM_005720	exon6	c.G552A	p.P184P	CACCCCGTGGGGC	.	91	25	70	0	G|0.999;A|0.000	160	125	35	0	0
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123516971	123516971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HYAL4-91	NM_012269	exon5	c.C1208A	p.A403E	ACCCTGCAAGTTA	.	222	57	201	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	35	17	0	0	.	0	0	0	0	0
MCPH1	79648	broad.mit.edu	37	8	6264212	6264212	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MCPH1-229	NM_001172575	exon1	c.22+2T>G	.	GAAAGGTGAGGTA	.	99	12	56	2	.	0	0	0	0	0
MTUS1	57509	bcgsc.ca	37	8	17601155	17601155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MTUS1-92	NM_001001924	exon3	c.C2245G	p.R749G	CGGCTCGATCAGC	.	108	11	119	9	.	1	1	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	16	16	0	0	T|0.935;A|0.065	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	22	21	2	2	.	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	4	4	0	0	G|0.108;T|0.892	19	0	19	0	0
TONSL	4796	hgsc.bcm.edu	37	8	145661675	145661675	+	Missense_Mutation	SNP	G	G	A	rs7830832	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TONSL-92	NM_013432	exon17	c.C2141T	p.A714V	ACATGGGCCTGAG	.	10	9	1	0	G|0.593;A|0.407	12	0	12	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	23	14	0	0	C|0.917;T|0.083	0	0	0	0	0
MEGF9	1955	hgsc.bcm.edu	37	9	123476135	123476135	+	Missense_Mutation	SNP	T	T	C	rs201806643		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	.	NM_001080497	exon1	c.A502G	p.T168A	GAGTCGTGGGCGC	.	60	30	8	0	.	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135715	126135715	+	Missense_Mutation	SNP	A	A	G	rs2488601		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	CRB2-91	NM_173689	exon10	c.A2905G	p.T969A	GCGGCCACCACCT	.	9	9	0	0	T|0.022;G|0.004	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	7	7	0	0	A|0.006;C|0.994	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139400219	139400219	+	Missense_Mutation	SNP	G	G	A	rs61751542	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	NOTCH1-5459	NM_017617	exon25	c.C4129T	p.P1377S	TGAAGGGGCCCAG	.	18	14	0	0	G|0.990;A|0.010	6	3	3	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCCGTGGCTCC	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCCGTGGCTCC	p.G43delinsGGRGS	CTGTGGAGGCTGT	.	49	18	29	0	.	0	0	0	0	0
HSPBP1	23640	broad.mit.edu	37	19	55790886	55790887	+	In_Frame_Ins	INS	-	-	GCCGCCGCC	rs3040014	bycluster;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	HSPBP1-90	NM_001130106	exon3	c.91_92insGGCGGCGGC	p.S31delinsGGGS	CCGAGGAGCCGCC	.	91	16	19	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	75	9	24	0	.	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	TBP-91	NM_003194	exon3	c.189_190insCAG	p.Q63delinsQQ	ACAACAACAGCAG	.	53	29	62	0	-|0.138;CAG|0.862	0	0	0	0	0
MFF	56947	bcgsc.ca	37	2	228194480	228194481	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	MFF-153	NM_020194	exon3	c.G20T	p.S7F	CAAGCAGTGACAC	.	224	0	336	1	G|0.737;T|0.263	0	0	0	0	0
GABRA6	2559	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161113302	161113303	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	.	GABRA6-163	NM_000811	exon2	c.C106A	p.L36M	CGGATCCTGGACA	.	208	5	124	0	.	0	0	0	0	0