Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ATP13A2	23400	bcgsc.ca	37	1	17326540	17326540	+	Silent	SNP	G	G	A	rs56290406	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP13A2-93	NM_022089	exon11	c.C1005T	p.A335A	CTCGCCGGCCACC	.	100	6	130	1	G|0.962;A|0.038	5	5	0	0	0
SDHB	6390	bcgsc.ca	37	1	17371278	17371278	+	Missense_Mutation	SNP	T	T	C	rs34599281	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SDHB-658	NM_003000	exon2	c.A178G	p.T60A	CATAAGTCTGCAT	.	60	4	72	0	T|1.000;C|0.000	73	73	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19600386	19600386	+	RNA	SNP	C	C	T	rs112053480	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	AKR7L-90	.	.	.	.	GAGCCCCAGGCCG	.	297	12	403	3	C|0.896;T|0.104	0	0	0	0	0
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32797321	32797321	+	Missense_Mutation	SNP	G	G	A	rs1140658	alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HDAC1-659	NM_004964	exon11	c.G1133A	p.G378E	CACCTGGGGTCCA	.	130	80	190	1	G|1.000;|0.000	77	31	46	0	0
BTBD19	149478	broad.mit.edu	37	1	45275923	45275923	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001136537	exon2	c.T125G	p.V42G	AGGAGGTATTTGC	.	73	12	94	16	.	0	0	0	0	0
SARS	6301	broad.mit.edu;bcgsc.ca	37	1	109772188	109772188	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SARS-90	NM_006513	exon4	c.C441T	p.N147N	CAGTAACGATGAG	.	166	10	204	1	.	0	0	0	0	0
KRTCAP2	200185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155141958	155141958	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRTCAP2-90	NM_173852	exon5	c.C447T	p.L149L	TGGTGTGAGGACT	.	260	170	271	0	.	333	107	226	0	0
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	179816744	179816745	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TOR1AIP2-69	NM_001199260	exon6	c.580_581del	p.194_194del	AATTTTTGTGTTT	.	94	15	95	0	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	16	16	0	0	C|0.242;T|0.758	0	0	0	0	0
SLC30A10	55532	broad.mit.edu	37	1	220101143	220101143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SLC30A10-90	NM_018713	exon1	c.G640A	p.G214S	AGGCACCTGCTAC	.	106	5	121	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228561682	228561682	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	OBSCN-403	NM_001271223	exon106	c.C25224T	p.F8408F	TTCCTTCCGGCTC	.	345	83	339	0	.	0	0	0	0	0
KMO	8564	broad.mit.edu	37	1	241752063	241752063	+	Silent	SNP	T	T	G	rs144089555	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KMO-92	NM_003679	exon12	c.T1029G	p.P343P	TCTTCCTGTGTTC	.	99	4	110	2	T|0.999;G|0.001	0	0	0	0	0
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIF26B-25	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT	.	51	44	32	0	.	0	0	0	0	0
C10orf111	221060	bcgsc.ca	37	10	15138615	15138615	+	Missense_Mutation	SNP	C	C	T	rs7896053	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C10orf111-90	NM_153244	exon2	c.G209A	p.R70K	GGTAGCCTGAGTC	.	182	6	208	2	C|0.740;T|0.260	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29747417	29747417	+	Silent	SNP	C	C	T	rs1887465	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SVIL-96	NM_021738	exon37	c.G6504A	p.P2168P	CCCCTCCGGGAGT	.	115	5	128	0	C|0.733;T|0.267	14	14	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPRIN2-90	NM_014696	exon3	c.G721A	p.V241M	AGGGAGGTGAGGG	.	116	20	124	0	G|0.639;A|0.361	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112559623	112559623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001134363	exon7	c.G1747A	p.G583S	ATCAATGGTGAGA	.	159	49	186	0	.	0	0	0	0	0
KCNJ11	3767	bcgsc.ca	37	11	17408831	17408831	+	Missense_Mutation	SNP	G	G	C	rs1800467	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KCNJ11-91	NM_000525	exon1	c.C808G	p.L270V	GTGCCAGGTCGTA	.	237	8	216	1	G|0.734;C|0.266	0	0	0	0	0
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47869867	47869867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NUP160-209	NM_015231	exon1	c.G106A	p.A36T	CCGCCGCCATCTT	.	88	6	52	0	.	0	0	0	0	0
EML3	256364	bcgsc.ca	37	11	62378802	62378802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	EML3-91	NM_153265	exon3	c.C209G	p.P70R	AGTCCTGGGGGGG	.	81	4	100	0	.	2	2	0	0	0
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64056752	64056777	+	Frame_Shift_Del	DEL	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPR137-68	NM_001170726	exon9	c.1343_1368del	p.448_456del	TTCTTGCCCAGGA	.	109	17	167	0	.	0	0	0	0	0
FADD	8772	broad.mit.edu;bcgsc.ca	37	11	70052536	70052536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FADD-660	NM_003824	exon2	c.C584T	p.P195L	TGTCCCCGATGTC	.	123	56	153	2	.	38	18	20	0	0
NOP2	4839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6672532	6672532	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOP2-92	NM_001258309	exon9	c.C936T	p.S312S	TCCATAGGAGTAG	.	77	40	84	0	.	5	2	3	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	421	20	340	22	G|0.998;A|0.002	794	490	303	1	0
KRT6A	3853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52882329	52882329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRT6A-27	NM_005554	exon7	c.G1207A	p.A403T	GGTTGGCGCACTG	.	296	160	302	0	.	0	0	0	0	0
KRT77	374454	bcgsc.ca	37	12	53088567	53088567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRT77-187	NM_175078	exon5	c.C923A	p.S308Y	ACCTGAGACAGCT	.	121	5	108	0	.	0	0	0	0	0
STAB2	55576	bcgsc.ca	37	12	104100617	104100617	+	Silent	SNP	C	C	T	rs697212	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	STAB2-104	NM_017564	exon38	c.C4044T	p.C1348C	GCCCTGCCCAGGG	.	238	10	226	2	T|0.306;G|0.121	0	0	0	0	0
N4BP2L2	10443	broad.mit.edu;bcgsc.ca	37	13	33017802	33017802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	N4BP2L2-68	NM_033111	exon7	c.C872G	p.S291C	ATGCCAGAGCAGT	.	249	9	280	0	.	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	4	4	0	0	C|0.372;T|0.628	0	0	0	0	0
ARHGEF40	55701	bcgsc.ca	37	14	21542766	21542766	+	Missense_Mutation	SNP	A	A	G	rs12889267	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ARHGEF40-228	NM_018071	exon3	c.A877G	p.K293E	CACCAGAAGGGCC	.	56	4	28	0	A|0.891;G|0.109	7	7	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52520649	52520649	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NID2-158	NM_007361	exon5	c.C1077T	p.S359S	CAAGGTGGAAGAT	.	109	41	100	0	.	0	0	0	0	0
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76232414	76232414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTLL5-92	NM_015072	exon20	c.A1718C	p.Q573P	TTACCCAACCAGC	.	62	29	77	0	.	0	0	0	0	0
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81961479	81961479	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SEL1L-227	NM_005065	exon11	c.T1131G	p.V377V	AAGACCAACCTGA	.	110	21	168	0	.	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105407448	105407448	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	AHNAK2-47	NM_138420	exon7	c.A14340G	p.E4780E	AGAAGATTCAAAG	.	252	84	143	0	.	0	0	0	0	0
PCSK6	5046	bcgsc.ca	37	15	101922323	101922323	+	Silent	SNP	A	A	G	rs1058260	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PCSK6-46	.	.	.	.	GGCCACACACATG	.	93	5	123	0	A|0.764;G|0.236	11	11	0	0	0
CLCN7	1186	bcgsc.ca	37	16	1500501	1500501	+	Silent	SNP	C	C	T	rs117461525	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon17	c.G1614A	p.A538A	CACCGCCGCCCCC	.	64	4	67	0	C|0.940;T|0.060	1	1	0	0	0
CLCN7	1186	bcgsc.ca	37	16	1502857	1502857	+	Missense_Mutation	SNP	C	C	T	rs12926089	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon15	c.G1252A	p.V418M	CCAGCACGGCCTC	.	189	9	249	3	C|0.889;T|0.111	4	4	0	0	0
CLCN7	1186	bcgsc.ca	37	16	1502864	1502864	+	Silent	SNP	A	A	G	rs12926669	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon15	c.T1245C	p.I415I	GGCCTCAATCACC	.	192	8	256	2	A|0.912;G|0.088	5	5	0	0	0
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20810279	20810279	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ERI2-153	NM_001142725	exon9	c.G843A	p.K281K	AGGCTCCTTATTA	.	62	8	47	0	.	2	1	1	0	0
CES3	23491	bcgsc.ca	37	16	67006838	67006838	+	Silent	SNP	G	G	A	rs3848289	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CES3-517	NM_024922	exon13	c.G1602A	p.R534R	GCCACGGGCCGGA	.	221	7	214	0	G|0.955;A|0.045	0	0	0	0	0
PKD1L3	342372	broad.mit.edu	37	16	72001136	72001136	+	RNA	SNP	G	G	A	rs4788587	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PKD1L3-68	.	.	.	.	CCCCTCGTTCAAA	.	87	6	124	1	G|0.739;A|0.261	0	0	0	0	0
LSMD1	84316	bcgsc.ca	37	17	7760704	7760704	+	Missense_Mutation	SNP	A	A	G	rs8522	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LSMD1-91	NM_032356	exon1	c.T38C	p.L13P	AACCCCAGCACTG	.	97	5	180	1	A|0.678;G|0.322	1	1	0	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10358566	10358566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MYH4-102	NM_017533	exon20	c.G2221A	p.D741N	TGCTGTCAATGAA	.	62	6	102	0	.	0	0	0	0	0
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu	37	17	12905890	12905890	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ELAC2-90	NM_173717	exon13	c.G1086C	p.G362G	GTCAGGCCCAAAC	.	97	5	162	0	.	0	0	0	0	0
ELAC2	60528	bcgsc.ca	37	17	12915009	12915009	+	Missense_Mutation	SNP	G	G	A	rs4792311	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ELAC2-90	NM_173717	exon7	c.C650T	p.S217L	TCATTCGACTCGG	.	93	6	185	3	G|0.755;A|0.245	5	5	0	0	0
FOXN1	8456	broad.mit.edu	37	17	26862078	26862078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FOXN1-226	NM_003593	exon7	c.A1489C	p.T497P	GCCCACACCCCAC	.	96	14	74	8	.	0	0	0	0	0
MIR193A	406968	bcgsc.ca	37	17	29887061	29887061	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	.	.	.	.	GAGGGTGTCGGAT	.	73	4	69	0	.	0	0	0	0	0
GPS1	2873	bcgsc.ca	37	17	80012449	80012449	+	Silent	SNP	G	G	A	rs11077966	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPS1-226	NM_212492	exon4	c.G492A	p.T164T	GGACACGGCCTGG	.	79	5	81	0	G|0.901;A|0.099	41	41	0	0	0
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	7011370	7011370	+	Missense_Mutation	SNP	C	C	T	rs202168119		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAMA1-149	NM_005559	exon25	c.G3616A	p.A1206T	CGGTGGCGGCATC	.	194	38	160	1	C|0.999;T|0.000	0	0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	7034664	7034664	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAMA1-149	NM_005559	exon14	c.A1865T	p.Q622L	TCAGCCTGTGTGC	.	121	4	138	0	.	0	0	0	0	0
C3	718	bcgsc.ca	37	19	6710782	6710782	+	Silent	SNP	G	G	T	rs2230203	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C3-95	NM_000064	exon13	c.C1554A	p.P518P	GGACAGGGGCAGC	.	275	9	258	2	G|0.888;T|0.112	4	3	1	0	0
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12907982	12907983	+	Splice_Site	DEL	TG	TG	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PRDX2-90	.	.	.	.	ACAAACTGTGGGA	.	155	17	116	0	.	0	0	0	0	0
IL27RA	9466	ucsc.edu;bcgsc.ca	37	19	14161650	14161650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	IL27RA-90	NM_004843	exon11	c.G1483A	p.A495T	ACCATCGCTGGAC	.	179	23	128	2	.	3	3	0	0	0
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15300189	15300189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOTCH3-855	NM_000435	exon7	c.G1087C	p.D363H	TAGCATCCTCGTG	.	543	43	143	0	.	0	0	0	0	0
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CHERP-92	NM_006387	exon8	c.1005_1007del	p.335_336del	TGCTGTTGCTGCT	.	311	9	102	0	.	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	8	8	0	0	C|0.617;T|0.383	1	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18375608	18375608	+	Silent	SNP	G	G	A	rs8102923	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIAA1683-92	NM_001145304	exon3	c.C2742T	p.A914A	GGACAGGGCCTGG	.	140	5	155	2	G|0.726;A|0.274	1	1	0	0	0
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800808	35800808	+	Silent	SNP	C	C	T	rs200957534		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MAG-947	NM_080600	exon8	c.C1263T	p.C421C	CCACTGCGCGGCA	.	218	160	70	0	.	0	0	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	87	21	43	6	.	31	28	3	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	23	17	2	0	T|0.228;C|0.772	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51052015	51052015	+	Silent	SNP	G	G	A	rs190220944	by1000genomes	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRRC4B-205	NM_001080457	exon2	c.C81T	p.L27L	GAGCCAGAGGAAG	.	20	13	2	0	G|0.995;A|0.005	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51052073	51052073	+	Missense_Mutation	SNP	G	G	A	rs142075522		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRRC4B-205	NM_001080457	exon2	c.C23T	p.P8L	GGGCACGGGGAGC	.	7	5	3	0	G|0.995;A|0.005	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384739	58384739	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001144989	exon3	c.T2019C	p.G673G	GAGGTTACCCTTG	.	318	2	229	1	.	13	10	3	0	0
MARCH4	57574	broad.mit.edu;bcgsc.ca	37	2	217124172	217124172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MARCH4-69	NM_020814	exon4	c.G1096A	p.G366S	GGTGGCCGGCAGC	.	199	7	119	1	.	0	0	0	0	0
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223789243	223789243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ACSL3-228	NM_203372	exon10	c.C1222G	p.L408V	CGTAATCTGTTTA	.	381	83	197	0	.	7	7	0	0	0
MFF	56947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228195447	228195447	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MFF-153	NM_020194	exon4	c.G144A	p.R48R	AATGAGGGTCCCA	.	420	69	319	0	.	75	59	16	0	0
DDRGK1	65992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3181069	3181069	+	Silent	SNP	C	C	T	rs148502836		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DDRGK1-90	NM_023935	exon3	c.G327A	p.A109A	AGTTTCCGCTGGC	.	173	42	120	0	C|1.000;T|0.000	222	152	70	0	0
MCM8	84515	ucsc.edu;bcgsc.ca	37	20	5939263	5939263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MCM8-227	NM_032485	exon7	c.G680A	p.R227H	TGGTTCGTGTCAG	.	213	133	170	3	.	2	0	2	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	.	.	.	.	CCATCGCGGCCAC	.	83	5	49	1	.	4	4	0	0	0
ZFP64	55734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50769031	50769031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZFP64-155	NM_018197	exon6	c.C1700T	p.P567L	ACAGCCGGCTGGG	.	100	35	56	1	.	15	8	7	0	0
TXNRD2	10587	bcgsc.ca	37	22	19867771	19867771	+	Silent	SNP	C	C	T	rs1139795	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TXNRD2-92	.	.	.	.	CTCCAGCGGGGTG	.	71	4	148	0	C|0.782;T|0.218	51	51	0	0	0
ZNF280A	129025	bcgsc.ca	37	22	22869085	22869085	+	Silent	SNP	C	C	T	rs61746878	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZNF280A-69	NM_080740	exon2	c.G870A	p.P290P	CTGTTCCGGCTGC	.	115	5	199	0	C|0.976;T|0.024	1	1	0	0	0
FBXO7	25793	broad.mit.edu	37	22	32881102	32881102	+	Silent	SNP	C	C	T	rs61752254	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FBXO7-228	NM_012179	exon4	c.C693T	p.S231S	GTTGAGCGGGGTG	.	101	4	202	1	C|0.996;T|0.004	32	32	0	0	0
SAMM50	25813	bcgsc.ca	37	22	44368204	44368204	+	Silent	SNP	A	A	G	rs3177036	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SAMM50-91	NM_015380	exon5	c.A411G	p.G137G	GGTTGGAAACAAT	.	110	6	219	1	A|0.383;G|0.617	16	16	0	0	0
CHCHD4	131474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	14154643	14154644	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CHCHD4-90	NM_144636	exon4	c.211_212del	p.71_71del	GCCATTCCCCCAA	.	228	0	231	0	.	0	0	0	0	0
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	3	53326623	53326623	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.859delG	p.E287fs	TGATTTCAGGCTG	.	342	36	232	0	.	0	0	0	0	0
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	3	53326625	53326625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.857delC	p.P286fs	ATTTCAGGCTGGA	.	314	36	221	0	.	0	0	0	0	0
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	3	53326628	53326628	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.854delA	p.Q285fs	TCAGGCTGGACTG	.	306	36	214	0	.	0	0	0	0	0
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	3	53326635	53326635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.847delT	p.S283fs	GGACTGAATGGTG	.	288	35	192	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	6	6	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	7	7	0	0	G|0.252;C|0.748	0	0	0	0	0
CCDC54	84692	bcgsc.ca	37	3	107096547	107096547	+	Missense_Mutation	SNP	G	G	A	rs709564	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CCDC54-90	NM_032600	exon1	c.G113A	p.R38Q	AGATTCGGCACCA	.	161	6	160	0	G|0.632;A|0.368	0	0	0	0	0
PVRL3	25945	broad.mit.edu;bcgsc.ca	37	3	110831005	110831005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PVRL3-92	NM_001243286	exon2	c.A289G	p.K97E	CATGGCAAAAGTT	.	455	16	418	0	.	0	0	0	0	0
H1FOO	132243	bcgsc.ca	37	3	129266431	129266431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	H1FOO-91	NM_153833	exon2	c.C286A	p.L96M	AAGTACCTGCTGA	.	75	4	70	0	.	0	0	0	0	0
SMC4	10051	broad.mit.edu;bcgsc.ca	37	3	160148531	160148531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SMC4-291	NM_005496	exon18	c.G2940C	p.E980D	TGCAGAGGTATGA	.	337	13	389	0	.	2	1	1	0	0
ATP10D	57205	bcgsc.ca	37	4	47578971	47578971	+	Missense_Mutation	SNP	G	G	A	rs16851681	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP10D-93	NM_020453	exon19	c.G3548A	p.R1183K	TTTACAGAAGTGG	.	200	7	223	1	G|0.728;A|0.272	3	3	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	406	0	444	0	.	0	0	0	0	0
SLC45A2	51151	broad.mit.edu;bcgsc.ca	37	5	33944896	33944896	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SLC45A2-93	NM_016180	exon7	c.C1450T	p.Q484X	CCAGCTGCACCAT	.	911	62	183	1	.	0	0	0	0	0
ATP6AP1L	92270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	81613911	81613911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP6AP1L-90	NM_001017971	exon4	c.C467T	p.S156F	CAATGTCCCTGAT	.	217	95	204	1	.	0	0	0	0	0
RGMB	285704	broad.mit.edu	37	5	98128940	98128940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001012761	exon5	c.G920C	p.G307A	AGAGTGGCCACTA	.	250	7	257	0	.	5	5	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127728908	127728908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FBN2-146	NM_001999	exon10	c.C1385A	p.P462H	CCTCCAGGGATGG	.	84	44	105	0	.	0	0	0	0	0
TTC1	7265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159491977	159491977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTC1-91	NM_003314	exon8	c.T784G	p.F262V	CGACCTTTTGGGC	.	56	34	62	0	.	102	49	53	0	0
KIAA1244	57221	bcgsc.ca	37	6	138613011	138613011	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIAA1244-228	NM_020340	exon19	c.C3189A	p.P1063P	GCCCCCCGAGCAC	.	110	50	88	3	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	8	6	3	0	G|0.456;C|0.544	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	5	1	0	C|0.329;G|0.671	4	1	3	0	0
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73636002	73636002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAT2-90	NM_032464	exon10	c.G368A	p.R123Q	GGGGGCGGTTCTC	.	72	13	68	0	.	1	1	0	0	0
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	81591223	81591224	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CACNA2D1-96	NM_000722	exon36	c.2952_2953del	p.984_985del	AGTTTCCACAGTC	.	71	22	69	0	.	0	0	0	0	0
PUS7	54517	broad.mit.edu	37	7	105122864	105122864	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PUS7-90	NM_019042	exon8	c.A944C	p.H315P	TTCAGGTGGGCAA	.	28	3	33	1	.	1	1	0	0	0
CSGALNACT1	55790	bcgsc.ca	37	8	19263441	19263441	+	Silent	SNP	G	G	A	rs35971700	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CSGALNACT1-70	NM_018371	exon10	c.C1449T	p.D483D	CAGCTCGTCCATG	.	90	5	174	0	G|0.945;A|0.055	16	16	0	0	0
BIN3	55909	bcgsc.ca	37	8	22494440	22494440	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_018688	exon3	c.93delT	p.L31fs	CTGCTGAAGTTTT	.	91	12	148	0	.	0	0	0	0	0
BIN3	55909	bcgsc.ca	37	8	22494441	22494441	+	Missense_Mutation	SNP	A	A	T	rs200762212	alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_018688	exon3	c.T92A	p.L31H	TGCTGAAGTTTTC	.	90	12	145	0	A|0.999;G|0.001	0	0	0	0	0
BRF2	55290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37702542	37702542	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	BRF2-90	NM_018310	exon4	c.G726A	p.R242R	TGAAAGCCGATCT	.	703	51	137	0	.	111	97	14	0	0
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	147	5	147	1	.	269	269	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120581567	120581567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ENPP2-292	NM_006209	exon22	c.G2117A	p.R706Q	TCAGGCCGGACGC	.	141	10	135	0	.	151	151	0	0	0
GSDMC	56169	bcgsc.ca	37	8	130760774	130760774	+	Silent	SNP	C	C	T	rs4733559	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GSDMC-93	NM_031415	exon14	c.G1500A	p.S500S	CAGCAACGAGAGA	.	163	7	202	0	C|0.868;T|0.132	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	13	0	13	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	5	5	0	0	C|0.731;T|0.269	0	0	0	0	0
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35375173	35375173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	UNC13B-157	NM_006377	exon13	c.G1343A	p.R448H	CTACACGCACTTC	.	187	82	222	0	.	2	1	1	0	0
TGFBR1	7046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101894969	101894969	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TGFBR1-954	NM_004612	exon3	c.T522A	p.G174G	AGAGGGTACTACG	.	122	46	146	1	.	0	0	0	0	0
NOXA1	10811	hgsc.bcm.edu	37	9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	rs112864733		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	8	4	0	0	C|0.934;G|0.066	0	0	0	0	0
SPIN2B	474343	hgsc.bcm.edu;bcgsc.ca	37	X	57146333	57146333	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SPIN2B-90	NM_001006683	exon2	c.G730C	p.D244H	CATCATCAAACTT	.	1390	416	1499	2	.	4	4	0	0	0
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	57619015	57619015	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZXDB-130	NM_007157	exon1	c.G534A	p.L178L	GCTGTTGCGCTTT	.	119	38	75	0	.	0	0	0	0	0
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	65423292	65423292	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HEPH-135	NM_138737	exon13	c.C2326T	p.Q776X	GGCCACCAAGCCA	.	237	12	219	0	.	0	0	0	0	0
GUCY2F	2986	broad.mit.edu;bcgsc.ca	37	X	108635183	108635183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GUCY2F-540	NM_001522	exon14	c.A2738T	p.Y913F	AGTGTGTACAGGT	.	489	23	474	1	.	0	0	0	0	0
RBMXL3	139804	broad.mit.edu	37	X	114426385	114426385	+	Missense_Mutation	SNP	G	G	A	rs80194951		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001145346	exon1	c.G2381A	p.R794H	GAGGCCGCTCACC	.	300	6	301	0	G|0.928;A|0.072	0	0	0	0	0
FRMD7	90167	broad.mit.edu;bcgsc.ca	37	X	131216403	131216403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FRMD7-228	NM_194277	exon9	c.G893C	p.S298T	CGGAAACTGGAAC	.	196	8	183	0	.	0	0	0	0	0
SMIM10	644538	broad.mit.edu;bcgsc.ca	37	X	134125311	134125311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001163438	exon1	c.G186C	p.K62N	GCGCAAGAACTTC	.	200	8	199	0	.	0	0	0	0	0
MIR452	574412	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151128149	151128149	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	.	.	.	.	CAAAGTCTCAGTT	.	270	77	227	0	.	0	0	0	0	0
MIR452	574412	ucsc.edu;bcgsc.ca	37	X	151128169	151128169	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	.	.	.	.	CAAACAGTTGTAA	.	230	60	191	1	.	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;bcgsc.ca	37	1	214814882	214814883	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CENPF-567	NM_016343	exon12	c.3201_3202insA	p.R1067fs	AAATAGGAAAAAT	.	221	149	244	2	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	21	8	13	0	.	0	0	0	0	0
SH2D6	284948	bcgsc.ca	37	2	85662863	85662864	+	Frame_Shift_Ins	INS	-	-	GGCCGGGTCTTCAACAT	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SH2D6-226	NM_198482	exon3	c.327_328insGGCCGGGTCTTCAACAT	p.R109fs	TCTCCGAGGCCGG	.	59	6	110	0	.	0	0	0	0	0
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	3	53326631	53326632	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.851_852insCC	p.V284fs	GGCTGGACTGAAT	.	294	0	201	0	.	0	0	0	0	0
PRDM6	93166	broad.mit.edu	37	5	122425971	122425972	+	In_Frame_Ins	INS	-	-	CCTCCGCCT	rs199942027		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001136239	exon2	c.262_263insCCTCCGCCT	p.T88delinsTSAS	TCTTCCACCTCCG	.	5	2	4	0	-|0.756;CCTCCGCCT|0.244	0	0	0	0	0
HGC6.3	0	broad.mit.edu	37	6	168376971	168376972	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001129895	exon1	c.362_363insT	p.S121fs	TGTTGGGAGGAGG	.	128	7	136	1	.	0	0	0	0	0