Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3732858	3732858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEP104-92	NM_014704	exon21	c.C2648T	p.P883L	AGTGCCGGGGCCT	.	62	15	49	0	.	7	7	0	0	0
CNR2	1269	bcgsc.ca	37	1	24201262	24201262	+	Silent	SNP	A	A	G	rs2502993	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CNR2-228	NM_001841	exon2	c.T846C	p.A282A	GCAGAAAGCAAAG	.	137	5	141	1	A|0.359;G|0.641	0	0	0	0	0
MTF2	22823	broad.mit.edu;bcgsc.ca	37	1	93575975	93575975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MTF2-92	NM_001164392	exon2	c.C194G	p.T65S	TTGGCACTATCAA	.	243	8	216	0	.	0	0	0	0	0
FMO5	2330	broad.mit.edu	37	1	146656097	146656097	+	Missense_Mutation	SNP	C	C	T	rs72708554		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FMO5-93	NM_001144829	exon9	c.G1369A	p.G457R	TTATTCCGGGACA	.	108	4	77	1	C|0.968;T|0.032	4	4	0	0	0
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	96	26	35	6	.	4	3	1	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SPRR3-45	NM_001097589	exon2	c.C219T	p.G73G	GCCAGGCTGTACC	.	162	29	150	0	A|0.000;C|0.697;T|0.303	2	1	1	0	0
SPRR3	6707	ucsc.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SPRR3-45	NM_001097589	exon2	c.T243A	p.G81G	GCCAGGTTGTACC	.	155	16	165	1	A|0.010;C|0.001;T|0.988	2	1	0	1	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	5	5	0	0	A|0.594;C|0.406	0	0	0	0	0
TNN	63923	broad.mit.edu;bcgsc.ca	37	1	175048704	175048704	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TNN-138	NM_022093	exon3	c.C645T	p.G215G	GCGCGGCGTGTGC	.	132	6	48	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	4	4	0	0	T|0.229;C|0.771	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	8	8	0	0	C|0.242;T|0.758	0	0	0	0	0
KIAA1804	0	broad.mit.edu;bcgsc.ca	37	1	233515177	233515177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KIAA1804-523	NM_032435	exon9	c.A2425T	p.T809S	TTCTCCACAAAGT	.	196	7	159	0	.	0	0	0	0	0
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106348	249106348	+	Silent	SNP	G	G	C	rs202116012		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	17	4	0	0	G|0.991;C|0.008	7	7	0	0	0
MCU	90550	hgsc.bcm.edu	37	10	74451963	74451963	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MCU-90	NM_001270679	exon1	c.C54G	p.G18G	GGGCGGCGGCGGC	.	14	6	3	0	.	0	0	0	0	0
MAT1A	4143	bcgsc.ca	37	10	82033594	82033594	+	Silent	SNP	G	G	A	rs2993763	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MAT1A-90	NM_000429	exon9	c.C1131T	p.Y377Y	ATGGCCGTAGCAT	.	228	8	211	0	G|0.458;A|0.542	0	0	0	0	0
GPAM	57678	broad.mit.edu	37	10	113924347	113924347	+	Nonsense_Mutation	SNP	G	G	A	rs144558318	alternate_allele	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GPAM-92	NM_001244949	exon13	c.C1243T	p.Q415X	GTTTCTGACTTTG	.	79	5	56	0	G|1.000;T|0.000	0	0	0	0	0
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	85	9	18	0	.	0	0	0	0	0
SOX6	55553	broad.mit.edu	37	11	15994582	15994582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SOX6-93	NM_001145819	exon16	c.C2299A	p.P767T	GCGATGGTGTGGT	.	105	4	144	0	.	0	0	0	0	0
TMEM134	80194	broad.mit.edu	37	11	67235051	67235051	+	Nonsense_Mutation	SNP	G	G	A	rs143199541	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMEM134-90	NM_025124	exon3	c.C250T	p.R84X	AAGTTCGGCTGGA	.	171	4	146	1	G|0.997;A|0.003	0	0	0	0	0
KRTAP5-10	387273	bcgsc.ca	37	11	71276951	71276951	+	Silent	SNP	T	T	C	rs76397897	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRTAP5-10-91	NM_001012710	exon1	c.T318C	p.S106S	TGGTTCTTGTGGG	.	72	14	47	3	T|0.991;C|0.009	0	0	0	0	0
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88386562	88386562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GRM5-949	NM_000842	exon4	c.G921C	p.W307C	GTCAGCCCAGCCA	.	29	12	35	0	.	0	0	0	0	0
NCAPD2	9918	bcgsc.ca	37	12	6631169	6631169	+	Silent	SNP	C	C	A	rs917634	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	NCAPD2-660	NM_014865	exon15	c.C1920A	p.I640I	TGGCATCATCAGC	.	105	5	111	0	C|0.475;A|0.525	2	2	0	0	0
TAS2R30	259293	bcgsc.ca	37	12	11286164	11286164	+	Missense_Mutation	SNP	G	G	A	rs200661425		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001097643	exon1	c.C680T	p.A227V	TGCAAAGCTTTTA	.	271	23	228	3	.	0	0	0	0	0
APOLD1	81575	hgsc.bcm.edu	37	12	12939892	12939892	+	Missense_Mutation	SNP	G	G	A	rs4763876		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	APOLD1-91	NM_001130415	exon2	c.G146A	p.R49Q	CGCTGCGGCGCTT	.	10	6	0	0	G|0.943;A|0.057	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	4	4	0	0	A|0.133;G|0.867	0	0	0	0	0
TMTC2	160335	broad.mit.edu;bcgsc.ca	37	12	83290354	83290354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMTC2-92	NM_152588	exon3	c.C1412G	p.A471G	AGACTGCGATCAG	.	182	9	63	0	.	0	0	0	0	0
DAO	1610	broad.mit.edu	37	12	109293174	109293174	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DAO-92	NM_001917	exon10	c.C835T	p.R279X	GGTGAACGAACTG	.	68	5	79	1	.	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	0	0	C|0.429;T|0.571	50	49	1	0	0
RFC3	5983	broad.mit.edu	37	13	34398063	34398063	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	RFC3-227	NM_002915	exon3	c.235delA	p.K79fs	CCATCTAAAAAAA	.	210	9	157	0	.	0	0	0	0	0
COG3	83548	bcgsc.ca	37	13	46103935	46103935	+	Missense_Mutation	SNP	A	A	G	rs2274285	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	COG3-154	NM_031431	exon21	c.A2240G	p.N747S	AGGTCAATGACCT	.	74	4	64	0	A|0.326;G|0.674	0	0	0	0	0
OR10G3	26533	bcgsc.ca	37	14	22038525	22038525	+	Silent	SNP	G	G	T	rs11626693	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	OR10G3-68	NM_001005465	exon1	c.C351A	p.T117T	CATTAGGGTGTAG	.	284	8	297	1	G|0.656;T|0.344	0	0	0	0	0
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81209499	81209499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEP128-91	NM_152446	exon18	c.A2726G	p.K909R	GATTCCTTGTTTT	.	58	17	68	0	.	0	0	0	0	0
TMOD2	29767	hgsc.bcm.edu;bcgsc.ca	37	15	52073255	52073255	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMOD2-92	NM_014548	exon6	c.G508T	p.E170X	AAAGGTGAAAAAG	.	60	4	83	0	.	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	4	4	8	0	C|0.452;T|0.548	0	0	0	0	0
LINS	55180	hgsc.bcm.edu	37	15	101110302	101110302	+	Missense_Mutation	SNP	C	C	G	rs2411837	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	LINS-92	NM_001040616	exon7	c.G1415C	p.S472T	GTCAAGCTTTCAG	.	7	5	1	0	C|0.688;G|0.310	3	0	3	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
POLR2A	5430	bcgsc.ca	37	17	7412403	7412403	+	Silent	SNP	T	T	C	rs2228133	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	POLR2A-91	NM_000937	exon21	c.T3606C	p.F1202F	TGACTTTGATGTG	.	200	7	332	2	T|0.909;C|0.091	3	3	0	0	0
FOXN1	8456	bcgsc.ca	37	17	26861877	26861877	+	Missense_Mutation	SNP	C	C	T	rs61749867	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FOXN1-226	NM_003593	exon7	c.C1288T	p.P430S	CCAGCTCCAGGCC	.	188	7	154	0	C|0.971;T|0.029	0	0	0	0	0
ATP6V0A1	535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40666399	40666399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATP6V0A1-91	NM_001130020	exon20	c.G2344A	p.A782T	TTCACTGCCTTTG	.	176	48	214	0	.	21	13	8	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	4	4	0	0	G|0.505;A|0.495	0	0	0	0	0
IGF2BP1	10642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	47117325	47117325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IGF2BP1-226	NM_006546	exon7	c.C690A	p.D230E	GATAGACGTGCAT	.	81	6	132	0	.	0	0	0	0	0
TMX3	54495	broad.mit.edu	37	18	66377285	66377285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMX3-91	NM_019022	exon4	c.G238A	p.G80R	TCTTTCCAACCTT	.	87	4	83	0	.	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	7	7	0	0	C|0.390;A|0.610	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9062415	9062415	+	Missense_Mutation	SNP	T	T	G	rs12978757	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MUC16-566	NM_024690	exon3	c.A25031C	p.D8344A	TGCATGTCTTCTG	.	227	7	249	2	T|0.401;G|0.599	0	0	0	0	0
PRKCSH	5589	hgsc.bcm.edu	37	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKCSH-90	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	104	8	130	0	.	40	40	0	0	0
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14088836	14088836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	RFX1-92	NM_002918	exon8	c.G897C	p.E299D	GCCGCCCTCCACA	.	84	32	115	0	.	1	1	0	0	0
SLC7A9	11136	bcgsc.ca	37	19	33355069	33355069	+	Silent	SNP	A	A	G	rs12150890	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC7A9-91	NM_001243036	exon4	c.T411C	p.C137C	GGGCGCACACACA	.	118	6	179	1	A|0.901;G|0.099	0	0	0	0	0
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu	37	19	39871263	39871263	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SAMD4B-90	NM_018028	exon13	c.C1686G	p.G562G	AGCTGGCTCTGTG	.	72	4	115	0	.	6	5	1	0	0
FCGBP	8857	bcgsc.ca	37	19	40406019	40406019	+	Silent	SNP	G	G	A	rs2355719	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FCGBP-98	NM_003890	exon10	c.C4827T	p.C1609C	GCACGTGCACTGC	.	180	8	307	3	G|0.732;A|0.268	0	0	0	0	0
CEACAM20	125931	bcgsc.ca	37	19	45016116	45016116	+	Missense_Mutation	SNP	A	A	G	rs8100718	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEACAM20-67	NM_001102600	exon10	c.T1534C	p.C512R	TATTGCAATACTC	.	136	6	198	0	A|0.633;G|0.367	0	0	0	0	0
MIR512-1	574458	broad.mit.edu	37	19	54169970	54169970	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	.	.	.	.	CTTTCTGGTGCCA	.	532	46	607	1	.	0	0	0	0	0
MIR512-1	574458	bcgsc.ca	37	19	54172454	54172454	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	.	.	.	.	CTTTCTGGTGCCA	.	470	85	574	0	.	0	0	0	0	0
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27560194	27560194	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GTF3C2-92	NM_001521	exon8	c.T1044G	p.S348S	GGGCAGGTAGGGA	.	172	54	176	0	.	2	2	0	0	0
SCN1A	6323	broad.mit.edu;bcgsc.ca	37	2	166898935	166898935	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SCN1A-147	NM_006920	exon13	c.2011-1G>T	.	TGTTCCCTGTAAA	.	108	5	97	0	.	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	181	4	204	2	.	452	451	0	1	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	192	4	204	1	.	412	412	0	0	0
TRPM8	79054	broad.mit.edu	37	2	234858625	234858625	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TRPM8-94	NM_024080	exon9	c.T975C	p.P325P	AATTCCTTGTGTG	.	106	8	77	0	.	0	0	0	0	0
LOC200772	0	broad.mit.edu	37	2	241898824	241898824	+	RNA	SNP	A	A	G	rs10169006	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	.	.	.	.	GCCTCCAGGACCT	.	313	8	325	1	A|0.288;G|0.712	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	6	6	0	0	T|0.454;C|0.546	0	0	0	0	0
DBNDD2	55861	hgsc.bcm.edu;bcgsc.ca	37	20	44035159	44035159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DBNDD2-536	NM_018478	exon1	c.A68G	p.D23G	CCTCCGACCGCCG	.	61	8	54	0	.	0	0	0	0	0
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19511427	19511427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CLDN5-492	NM_001130861	exon1	c.G607C	p.A203P	TGAGGGCCACACG	.	27	10	36	0	.	40	40	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	5	5	0	0	G|0.826;C|0.174	0	0	0	0	0
SH3BP1	23616	broad.mit.edu	37	22	38042891	38042891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SH3BP1-90	NM_018957	exon11	c.C991T	p.P331S	TCGGACCCCCACA	.	35	3	47	0	.	0	0	0	0	0
SLC6A11	6538	bcgsc.ca	37	3	10967739	10967739	+	Silent	SNP	T	T	C	rs2272395	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC6A11-132	NM_014229	exon9	c.T1170C	p.P390P	GATGCCTCTCTCC	.	104	5	134	1	T|0.591;C|0.409	0	0	0	0	0
SLC6A1	6529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11072862	11072862	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC6A1-92	NM_003042	exon13	c.1324-1G>T	.	CTTGCAGGGGGGT	.	65	28	72	0	.	0	0	0	0	0
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64133073	64133073	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRICKLE2-95	NM_198859	exon7	c.C1093T	p.L365L	CTGACAGCCGGTT	.	107	30	108	0	.	0	0	0	0	0
TIPARP	25976	broad.mit.edu	37	3	156395550	156395550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TIPARP-523	NM_015508	exon2	c.G64A	p.D22N	CCTGATGACTTTT	.	57	4	48	0	.	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	9	6	0	0	G|0.946;A|0.054	0	0	0	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6087227	6087227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	JAKMIP1-292	NM_001099433	exon4	c.G754A	p.E252K	CGGCCTCCTTGAC	.	82	3	94	0	.	0	0	0	0	0
PROM1	8842	broad.mit.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PROM1-207	NM_006017	exon15	c.1697delA	p.N566fs	CCTCTATTTTTTT	.	175	7	122	0	.	0	0	0	0	0
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	113352982	113352982	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ALPK1-337	NM_001102406	exon11	c.2279delG	p.R760fs	AAGACAGGCAGGG	.	51	16	31	0	.	0	0	0	0	0
IL2	3558	broad.mit.edu	37	4	123374962	123374962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IL2-659	NM_000586	exon3	c.C254A	p.P85H	TCCAGAGGTTTGA	.	101	4	79	0	.	0	0	0	0	0
SRD5A1	6715	bcgsc.ca	37	5	6652009	6652009	+	Silent	SNP	G	G	A	rs8192186	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SRD5A1-90	NM_001047	exon2	c.G348A	p.A116A	GTTGGCGTGTACA	.	214	7	191	0	G|0.652;A|0.348	2	2	0	0	0
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	145838656	145838656	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TCERG1-92	NM_006706	exon4	c.G648A	p.Q216Q	GGCCCAGGCCCAG	.	73	19	19	0	.	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838662	145838662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TCERG1-92	NM_006706	exon4	c.G654A	p.Q218Q	GGCCCAGGCCCAG	.	76	14	22	0	.	0	0	0	0	0
SLC36A2	153201	bcgsc.ca	37	5	150723806	150723806	+	Silent	SNP	G	G	A	rs192192	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC36A2-91	NM_181776	exon2	c.C187T	p.L63L	TCACCAGGTGAAT	.	221	7	198	1	G|0.470;A|0.530	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169482342	169482342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DOCK2-97	NM_004946	exon42	c.A4247T	p.D1416V	TCTTGGATGAACA	.	125	9	131	0	.	1	1	0	0	0
BTNL3	10917	bcgsc.ca	37	5	180432564	180432564	+	Missense_Mutation	SNP	G	G	T	rs73815153	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_197975	exon8	c.G1093T	p.G365W	GACAGGGGGAAGA	.	254	9	285	1	G|0.927;T|0.073	0	0	0	0	0
ADTRP	84830	bcgsc.ca	37	6	11723636	11723636	+	Missense_Mutation	SNP	C	C	T	rs2076185	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001143948	exon6	c.G658A	p.V220I	TGAAGACGTAGCT	.	148	9	187	1	C|0.890;T|0.110	0	0	0	0	0
SKIV2L	6499	broad.mit.edu;bcgsc.ca	37	6	31935101	31935101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SKIV2L-290	NM_006929	exon21	c.G2530A	p.V844M	GGAAGGGTGGTGG	.	232	11	377	0	.	7	6	1	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56482929	56482929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DST-523	NM_001723	exon23	c.T5903A	p.I1968K	AAAGTTATCTGTA	.	134	10	88	0	.	0	0	0	0	0
EEF1A1	1915	broad.mit.edu;bcgsc.ca	37	6	74228257	74228257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	EEF1A1-226	NM_001402	exon6	c.C849T	p.V283V	AACGTTGACTGGA	.	745	17	744	1	.	7053	6928	117	1	7
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76633419	76633419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IMPG1-93	NM_001563	exon16	c.C2248G	p.P750A	GATCTGGCAACCT	.	26	10	32	0	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	9	4	0	0	T|0.089;G|0.911	0	0	0	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592576	167592576	+	Silent	SNP	G	G	A	rs60976240	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001145121	exon6	c.G735A	p.T245T	CGCCACGCTGCAG	.	85	4	100	2	G|0.425;A|0.575	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	9	9	0	0	C|0.329;G|0.671	1	0	1	0	0
AMPH	273	bcgsc.ca	37	7	38431436	38431436	+	Silent	SNP	C	C	T	rs1058656	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	AMPH-95	NM_001635	exon19	c.G1791A	p.T597T	AGAAGGCGTGGGC	.	65	4	56	0	C|0.804;T|0.196	1	1	0	0	0
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91974336	91974336	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ANKIB1-432	NM_019004	exon7	c.G1041A	p.V347V	CCCTGTGGATATG	.	179	56	175	0	.	0	0	0	0	0
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138872237	138872237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TTC26-91	NM_024926	exon17	c.G1505C	p.G502A	AACGGGGTGCCTG	.	154	48	125	0	.	1	0	1	0	0
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	15967636	15967636	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MSR1-91	NM_138715	exon10	c.C1314G	p.A438A	TGAACAGGCTCTT	.	81	25	61	0	.	1	1	0	0	0
ASAP1	50807	broad.mit.edu	37	8	131172197	131172197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ASAP1-95	NM_018482	exon12	c.G923A	p.R308Q	CCTTGCCGGCTCT	.	63	3	77	0	.	0	0	0	0	0
ALG2	85365	ucsc.edu	37	9	101980798	101980798	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ALG2-92	NM_033087	exon2	c.G669A	p.G223G	TTTTTTCCCCTTG	.	110	1	108	0	.	19	18	1	0	0
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76939322	76939322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATRX-248	NM_000489	exon9	c.C1426T	p.Q476X	CATTCTGATGCAT	.	62	18	56	0	.	0	0	0	0	0
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	X	138886677	138886677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATP11C-198	NM_001010986	exon6	c.A517G	p.T173A	AACAGGTTCCATC	.	352	10	381	1	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39898819	39898820	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MACF1-165	NM_012090	exon64	c.11371_11372insT	p.V3791fs	AAAACTGTATTAC	.	269	83	203	0	.	0	0	0	0	0
KRT2	3849	hgsc.bcm.edu	37	12	53045632	53045633	+	In_Frame_Ins	INS	-	-	GCCTCCAAAGCCGCTGCC	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRT2-92	NM_000423	exon1	c.295_296insGGCAGCGGCTTTGGAGGC	p.G99delinsGSGFGGG	TGCTGCCGCCTCC	.	549	190	149	0	.	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu	37	17	66511699	66511700	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKAR1A-1141	NM_001276290	exon1	c.159_160insT	p.Y53fs	GGAATACTTTGAG	.	173	118	78	2	.	0	0	0	0	0