Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF11	440560	ucsc.edu;bcgsc.ca	37	1	12884981	12884981	+	Missense_Mutation	SNP	T	T	C	rs71225486		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001146344	exon4	c.A1130G	p.Q377R	CTTTCCTGCGGGG	.	36	4	272	3	T|0.500;C|0.500	0	0	0	0	0
LRRC38	126755	broad.mit.edu;bcgsc.ca	37	1	13802437	13802437	+	Silent	SNP	G	G	A	rs3013106	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001010847	exon2	c.C762T	p.S254S	CACACCGGAGAAA	.	411	10	340	2	A|0.323;C|0.008	26	26	0	0	0
SDHB	6390	broad.mit.edu	37	1	17380491	17380491	+	Silent	SNP	G	G	A	rs148738139	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SDHB-658	NM_003000	exon1	c.C24T	p.S8S	CCTCAAGGAGAGG	.	186	5	70	0	G|0.996;A|0.004	0	0	0	0	0
PADI4	23569	bcgsc.ca	37	1	17660499	17660499	+	Missense_Mutation	SNP	G	G	C	rs874881	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PADI4-70	NM_012387	exon3	c.G335C	p.G112A	TCACCGGGGTGGG	.	119	5	104	1	G|0.467;C|0.533	0	0	0	0	0
KIF17	57576	bcgsc.ca	37	1	21012575	21012575	+	Silent	SNP	G	G	A	rs479323	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KIF17-94	NM_001122819	exon9	c.C1983T	p.P661P	GGCTTCGGGCCTG	.	99	5	44	0	G|0.793;A|0.207	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22180824	22180824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HSPG2-141	NM_005529	exon50	c.C6301G	p.R2101G	GCAGACGGGAGCC	.	53	45	49	0	.	12	5	7	0	0
ALG6	29929	ucsc.edu;bcgsc.ca	37	1	63885045	63885045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ALG6-90	NM_013339	exon12	c.G992T	p.S331I	AGGTTAGCTGTGC	.	37	4	28	0	.	0	0	0	0	0
KCNN3	3782	bcgsc.ca	37	1	154744852	154744852	+	Silent	SNP	A	A	G	rs1131820	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KCNN3-91	NM_001204087	exon3	c.T1047C	p.N349N	CGCGCCATTGTCG	.	379	9	260	2	G|0.746;N|0.000	0	0	0	0	0
SOAT1	6646	ucsc.edu;bcgsc.ca	37	1	179312752	179312752	+	Silent	SNP	C	C	T	rs10753191	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SOAT1-515	NM_003101	exon10	c.C969T	p.V323V	TTATGTCGCTATG	.	47	4	45	0	C|0.768;N|0.000	247	247	0	0	0
IGFN1	91156	bcgsc.ca	37	1	201184275	201184275	+	Silent	SNP	C	C	T	rs2275673	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	IGFN1-71	NM_001164586	exon14	c.C8988T	p.T2996T	CCTGACCGTCCAG	.	332	10	286	0	C|0.683;T|0.317	0	0	0	0	0
SLC26A9	115019	broad.mit.edu	37	1	205898454	205898454	+	Missense_Mutation	SNP	G	G	A	rs143411715	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC26A9-92	NM_052934	exon7	c.C748T	p.H250Y	TGGTGTGGGGGAG	.	67	4	77	0	G|0.999;A|0.001	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	IBA57-90	NM_001010867	exon2	c.C390A	p.S130R	TGACAGCTCGGTG	.	52	10	19	2	.	1	1	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228494790	228494790	+	Missense_Mutation	SNP	G	G	A	rs435776	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OBSCN-403	NM_001271223	exon56	c.G14986A	p.G4996R	GTACGCGGAGTGG	.	461	11	286	1	G|0.378;T|0.151	4	4	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	10	10	0	0	G|0.841;A|0.159	2	0	2	0	0
PGBD5	79605	broad.mit.edu	37	1	230492646	230492646	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PGBD5-93	NM_001258311	exon2	c.A753G	p.Q251Q	CTGGGTTTGGGAA	.	139	6	115	0	.	0	0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	GGC	-	rs72215772	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FMN2-145	NM_020066	exon1	c.160_162del	p.54_54del	GGAGGGGGCGGCG	.	11	5	4	0	.	0	0	0	0	0
MYO3A	53904	bcgsc.ca	37	10	26463130	26463130	+	Missense_Mutation	SNP	C	C	A	rs1999240	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYO3A-1007	NM_017433	exon30	c.C3937A	p.R1313S	ACCCAGCGTGCAC	.	333	9	173	1	C|0.401;A|0.599	4	4	0	0	0
ZNF485	220992	bcgsc.ca	37	10	44111806	44111806	+	Silent	SNP	G	G	A	rs10899839	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF485-90	NM_145312	exon5	c.G315A	p.L105L	TGTTCTGGGAGAG	.	257	8	175	0	G|0.681;A|0.319	3	3	0	0	0
FAM21B	55747	bcgsc.ca	37	10	47915898	47915898	+	Silent	SNP	A	A	G	rs61856727	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FAM21B-23	NM_018232	exon15	c.A1305G	p.K435K	CAGCAAAAATCTC	.	74	39	125	12	A|0.375;G|0.625	1	0	1	0	0
CDHR1	92211	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85978991	85978991	+	Silent	SNP	C	C	T	rs7895270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CDHR1-91	NM_001171971	exon17	c.C2197T	p.L733L	GTGAATCTGTACT	.	46	7	36	0	C|0.735;T|0.265	0	0	0	0	0
RRP12	23223	bcgsc.ca	37	10	99155984	99155984	+	Silent	SNP	G	G	A	rs3814553	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RRP12-92	NM_001145114	exon3	c.C444T	p.F148F	AGCAGCGAAGTAC	.	140	7	112	1	G|0.618;A|0.382	0	0	0	0	0
GSTO2	119391	bcgsc.ca	37	10	106039185	106039185	+	Missense_Mutation	SNP	A	A	G	rs156697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GSTO2-91	NM_183239	exon5	c.A424G	p.N142D	TGCACTAATCTGA	.	132	5	117	0	A|0.537;G|0.463	4	4	0	0	0
JAKMIP3	282973	bcgsc.ca	37	10	133954011	133954011	+	Silent	SNP	C	C	T	rs2818387	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	JAKMIP3-23	NM_001105521	exon9	c.C1401T	p.D467D	ATCCGACGGCTCC	.	323	11	125	0	C|0.497;T|0.503	0	0	0	0	0
TTC40	54777	broad.mit.edu	37	10	134726621	134726621	+	Silent	SNP	G	G	C	rs4880467	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001200049	exon18	c.C2262G	p.A754A	CCGCCCGGCCAGG	.	402	8	149	0	G|0.741;C|0.259	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	152	7	121	1	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	84	8	13	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	82	6	12	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1271223	1271223	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon31	c.C13113G	p.T4371T	GGCCACCACGACA	.	400	34	296	0	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	8	8	0	0	C|0.602;T|0.398	0	0	0	0	0
OR56A4	120793	bcgsc.ca	37	11	6023818	6023818	+	Silent	SNP	G	G	A	rs10839221	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OR56A4-69	NM_001005179	exon1	c.C561T	p.Y187Y	AGACGGGTATCTC	.	171	8	202	2	G|0.801;A|0.199	0	0	0	0	0
OR56A4	120793	ucsc.edu;bcgsc.ca	37	11	6023924	6023924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OR56A4-69	NM_001005179	exon1	c.G455A	p.C152Y	AGGAAGCAGGCTG	.	188	163	183	2	.	0	0	0	0	0
USH1C	10083	bcgsc.ca	37	11	17542439	17542439	+	Silent	SNP	T	T	C	rs2240487	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	USH1C-91	NM_005709	exon14	c.A1188G	p.P396P	GGGTACTGGGTGT	.	173	9	216	0	C|0.518;T|0.482	0	0	0	0	0
EHBP1L1	254102	bcgsc.ca	37	11	65351074	65351074	+	Silent	SNP	G	G	A	rs10896018	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	EHBP1L1-69	NM_001099409	exon9	c.G2931A	p.A977A	GGAAGCGGAGGCT	.	62	5	67	0	G|0.706;A|0.294	1	1	0	0	0
PRKRIR	5612	hgsc.bcm.edu	37	11	76072085	76072085	+	Missense_Mutation	SNP	C	C	T	rs76214254	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRKRIR-93	NM_004705	exon3	c.G233A	p.R78Q	TTATCTCGAAGAA	.	49	4	33	0	C|0.999;T|0.001	6	6	0	0	0
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122817236	122817236	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C11orf63-93	NM_024806	exon6	c.G1665T	p.T555T	CCAGACGGTTAGA	.	99	90	113	0	.	0	0	0	0	0
FOXM1	2305	bcgsc.ca	37	12	2968169	2968169	+	Missense_Mutation	SNP	A	A	G	rs3742076	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FOXM1-227	NM_202002	exon10	c.T2041C	p.S681P	CCTGGGAGGTTTG	.	13	12	11	0	A|0.714;G|0.286	22	0	22	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244126	11244126	+	Missense_Mutation	SNP	G	G	A	rs113410031	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C703T	p.L235F	ACAAGAGGAAGGA	.	36	18	124	5	G|0.663;A|0.337	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244149	11244149	+	Missense_Mutation	SNP	G	G	A	rs73064964		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C680T	p.A227V	TGCAAAGCTTTTA	.	33	19	116	5	.	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244169	11244169	+	Silent	SNP	G	G	A	rs201144595		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C660T	p.S220S	CTTGGTGCTGGGA	.	36	19	111	4	.	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244190	11244190	+	Silent	SNP	A	A	G	rs202034865	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.T639C	p.G213G	TCCTTTACCATGG	.	35	19	104	5	A|0.321;G|0.679	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244687	11244687	+	Missense_Mutation	SNP	G	G	C	rs113197337		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C142G	p.L48V	CAGTGAGAATTTG	.	26	21	73	7	.	0	0	0	0	0
PRB4	5545	ucsc.edu	37	12	11461596	11461596	+	Silent	SNP	T	T	G	rs59021567		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRB4-91	NM_001261399	exon3	c.A321C	p.G107G	CTGGTTTCCTCCT	.	34	13	24	3	T|0.250;G|0.750	0	0	0	0	0
SLCO1B1	10599	bcgsc.ca	37	12	21331549	21331549	+	Missense_Mutation	SNP	T	T	C	rs4149056	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLCO1B1-97	NM_006446	exon6	c.T521C	p.V174A	TATATGTGTTCAT	.	197	6	218	2	T|0.890;C|0.110	0	0	0	0	0
SENP1	29843	bcgsc.ca	37	12	48477416	48477416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SENP1-660	NM_001267594	exon6	c.C510A	p.S170R	CTTGGGGCTCAAA	.	90	6	84	0	.	5	5	0	0	0
MLL2	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49445552	49445552	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MLL2-612	NM_003482	exon10	c.A1914C	p.P638P	TTCAGGTGGTGGG	.	22	16	39	1	.	3	0	3	0	0
SLC35E3	55508	hgsc.bcm.edu;bcgsc.ca	37	12	69153001	69153001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC35E3-514	NM_018656	exon4	c.G737T	p.G246V	TCATTGGGAACAC	.	54	4	57	0	.	8	8	0	0	0
DTX1	1840	bcgsc.ca	37	12	113533150	113533150	+	Silent	SNP	C	C	T	rs61758446	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DTX1-659	NM_004416	exon8	c.C1569T	p.P523P	CAACCCCGGGAAG	.	73	4	71	1	C|0.988;T|0.012	0	0	0	0	0
HCAR1	27198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123214708	123214708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HCAR1-156	NM_032554	exon1	c.C179G	p.A60G	AAATCAGCCACGG	.	75	68	90	0	.	0	0	0	0	0
XPO4	64328	bcgsc.ca	37	13	21374333	21374333	+	Silent	SNP	A	A	G	rs9579954	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	XPO4-272	NM_022459	exon15	c.T2109C	p.T703T	CTGCACAGTGTCA	.	118	5	129	0	A|0.912;G|0.088	3	3	0	0	0
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	88330510	88330517	+	Frame_Shift_Del	DEL	GCCAGTTC	GCCAGTTC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	GCCAGTTC	GCCAGTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLITRK5-94	NM_015567	exon2	c.2867_2874del	p.956_958del	CGTTTAGCCAGTT	.	17	14	47	0	.	0	0	0	0	0
GAS6	2621	hgsc.bcm.edu	37	13	114525009	114525009	+	Missense_Mutation	SNP	C	C	T	rs144262744	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GAS6-650	NM_000820	exon14	c.G1804A	p.A602T	GCTGCGCGGCGCT	.	80	72	0	0	C|0.999;T|0.001	23	3	19	0	1
ZNF219	51222	hgsc.bcm.edu	37	14	21560706	21560706	+	Silent	SNP	C	C	G	rs1065496	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF219-90	NM_001102454	exon3	c.G750C	p.P250P	GGGCTCCGGCTCC	.	37	21	1	0	C|0.100;G|0.900	79	32	46	1	0
FAM161B	145483	bcgsc.ca	37	14	74402693	74402693	+	Silent	SNP	C	C	T	rs17182699	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FAM161B-91	NM_152445	exon8	c.G1953A	p.R651R	AACAGCCCGGGTG	.	183	6	97	0	C|0.935;T|0.065	7	7	0	0	0
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96987355	96987355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PAPOLA-68	NM_001252006	exon3	c.G195T	p.L65F	AATTTTGGGAAAA	.	181	81	156	1	.	167	79	88	0	0
CEP170B	283638	broad.mit.edu	37	14	105359440	105359440	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001112726	exon14	c.A4006C	p.T1336P	CCCAGCACCCCCG	.	297	46	49	6	.	30	26	3	0	1
AHNAK2	113146	bcgsc.ca	37	14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	rs10438246	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AHNAK2-47	NM_138420	exon7	c.A11605G	p.M3869V	GTTTCATGTCCAC	.	423	10	209	1	T|0.456;C|0.544	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921176	24921176	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_018958	exon1	c.C162T	p.N54N	CCGGAACGCCCGT	.	36	30	2	0	.	0	0	0	0	0
C15orf62	643338	hgsc.bcm.edu	37	15	41062922	41062922	+	Silent	SNP	C	C	T	rs115347345	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001130448	exon1	c.C229T	p.L77L	ACCCTGCTGGCCC	.	9	9	1	0	C|0.943;T|0.057	0	0	0	0	0
LCTL	197021	broad.mit.edu	37	15	66853375	66853375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	LCTL-92	NM_207338	exon6	c.G674T	p.G225V	TACAGGCCGGTGC	.	76	8	57	5	.	0	0	0	0	0
ZNF774	342132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90904066	90904066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF774-90	NM_001004309	exon4	c.G1003C	p.V335L	CATTTTGTAGCTC	.	40	4	59	0	.	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1252124	1252124	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CACNA1H-67	NM_021098	exon9	c.G1674A	p.S558S	CCCCTCGCCACCT	.	36	17	0	0	.	7	3	4	0	0
TPSAB1	7177	bcgsc.ca	37	16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G	rs1800992		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TPSAB1-22	NM_003294	exon4	c.A421G	p.T141A	ACGGTCACCCTGC	.	662	204	91	8	G|1.000;|0.000	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	rs224222	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MEFV-228	NM_000243	exon2	c.G605A	p.R202Q	CGCAGCCGGACCT	.	10	10	0	0	C|0.816;T|0.184	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	6	6	0	0	G|0.570;T|0.430	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C	rs190057031		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMG1-1160	NM_015092	exon1	c.A34G	p.S12G	CGCCGCTGCTCAG	.	47	23	1	0	T|0.974;C|0.026	7	1	6	0	0
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20384188	20384188	+	Missense_Mutation	SNP	C	C	A	rs193085306	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PDILT-153	NM_174924	exon7	c.G854T	p.S285I	TCGGAGCTTTTGG	.	173	78	88	0	C|0.999;T|0.000	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	11	11	0	0	C|0.218;G|0.782	0	0	0	0	0
FBXL19	54620	hgsc.bcm.edu	37	16	30937068	30937068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FBXL19-661	NM_001099784	exon2	c.C53T	p.T18M	TGCTGACGCCCCC	.	18	9	0	0	.	0	0	0	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31476186	31476186	+	Silent	SNP	C	C	G	rs55800131	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ARMC5-24	NM_024742	exon4	c.C1842G	p.L614L	CACTCTCCACAGC	.	12	5	2	0	C|0.940;G|0.060	12	7	5	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67913786	67913788	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	EDC4-92	NM_014329	exon16	c.1855_1857del	p.619_619del	AGCGGTAGCAGCA	.	110	6	56	0	.	0	0	0	0	0
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77389876	77389876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ADAMTS18-1036	NM_199355	exon9	c.G1421T	p.W474L	GAAGACCATGAAA	.	172	88	114	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	rs77382359		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	59	8	33	0	C|0.500;T|0.500	0	0	0	0	0
C16orf3	750	ucsc.edu	37	16	90095597	90095597	+	Missense_Mutation	SNP	T	T	C	rs61118444	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52V	AGGCTATGGGGCA	.	48	14	10	0	T|0.361;C|0.639	0	0	0	0	0
OR3A4P	390756	bcgsc.ca	37	17	3213877	3213877	+	RNA	SNP	C	C	A	rs139602609	by1000genomes;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	.	.	.	.	ATCCAACGACAGA	.	219	188	258	5	C|0.999;T|0.000	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	rs17882252	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TP53-70225	NM_000546	exon10	c.G1015T	p.E339X	ACATCTCGAAGCG	.	105	89	136	0	C|0.994;T|0.006	3	0	3	0	0
KCNJ18	100134444	ucsc.edu;bcgsc.ca	37	17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	rs5021699	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001194958	exon3	c.A1289G	p.E430G	GACGGGAGTCAGA	.	59	18	22	0	A|0.600;G|0.400	0	0	0	0	0
NOS2	4843	bcgsc.ca	37	17	26089867	26089867	+	Silent	SNP	T	T	C	rs1060826	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	NOS2-156	NM_000625	exon22	c.A2757G	p.T919T	GATCTCTGTGGGC	.	77	5	69	0	T|0.303;C|0.697	0	0	0	0	0
C17orf66	256957	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	34190106	34190106	+	Silent	SNP	G	G	T	rs142219051	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C17orf66-155	NM_152781	exon8	c.C649A	p.R217R	GAGCCCGGATCAC	.	44	4	42	0	G|1.000;A|0.000	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001130677	exon1	c.C187G	p.L63V	CCGCCAGCTCCCC	.	6	4	0	0	G|0.824;C|0.176	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_031960	exon1	c.T283A	p.C95S	AGATGCAGCAGCT	.	188	24	14	0	A|0.500;T|0.500	0	0	0	0	0
KRTAP4-9	100132386	ucsc.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T	rs113059833		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001146041	exon1	c.A53T	p.D18V	GCCAAGACCTCTG	.	85	10	61	1	T|1.000;|0.000	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	159	26	50	0	G|0.500;C|0.500	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_033059	exon1	c.A277G	p.M93V	AGCACATAGACTG	.	88	23	12	0	.	0	0	0	0	0
ASPSCR1	79058	hgsc.bcm.edu	37	17	79974915	79974916	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ASPSCR1-877	NM_001251888	exon16	c.1856_1857del	p.619_619del	TCCCCCCTGAGCC	.	44	39	7	3	.	0	0	0	0	0
MYL12B	103910	broad.mit.edu;bcgsc.ca	37	18	3277813	3277813	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYL12B-90	NM_033546	exon4	c.C397A	p.R133R	GGGGATCGGTTTA	.	236	11	223	1	.	1467	1461	6	0	0
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24497051	24497051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CHST9-93	NM_031422	exon6	c.G504T	p.W168C	TTTCTTCCATTTA	.	53	45	85	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	8	8	0	0	C|0.766;T|0.234	5	0	5	0	0
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934196	2934196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF77-91	NM_021217	exon4	c.C929G	p.S310C	CTAAAGGAGGAGT	.	275	115	145	0	.	7	2	5	0	0
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4216002	4216002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ANKRD24-68	NM_133475	exon16	c.G1225A	p.V409I	TATGACGTAACCA	.	119	54	49	0	.	5	5	0	0	0
ICAM3	3385	bcgsc.ca	37	19	10450285	10450285	+	Silent	SNP	G	G	A	rs281414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ICAM3-131	NM_002162	exon1	c.C6T	p.A2A	CATGGTGGCCATT	.	80	6	33	0	G|0.827;A|0.173	3	3	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	5	4	0	0	C|0.734;A|0.266	15	3	12	0	0
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF546-155	NM_178544	exon7	c.G1046T	p.R349I	ATCAAAGAATTCA	.	160	78	75	0	.	0	0	0	0	0
LILRA6	79168	bcgsc.ca	37	19	54746589	54746589	+	Silent	SNP	G	G	A	rs199943671	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	LILRA6-24	NM_024318	exon1	c.C12T	p.A4A	TGTGAGGGCGGGC	.	487	13	206	2	G|0.995;A|0.005	0	0	0	0	0
GP6	51206	hgsc.bcm.edu	37	19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	rs1671150	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GP6-92	NM_001083899	exon8	c.T1816C	p.F606L	AGACAAAGTCAGG	.	4	4	0	0	A|0.233;G|0.767	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56002197	56002197	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001195267	exon6	c.C645T	p.H215H	CTGGCACGGCGGG	.	31	23	0	0	.	0	0	0	0	0
PLEKHH2	130271	ucsc.edu;bcgsc.ca	37	2	43931138	43931138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PLEKHH2-92	NM_172069	exon9	c.G1669T	p.V557L	TATGCTGTAGCCA	.	41	4	35	0	.	1	1	0	0	0
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	54482557	54482557	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TSPYL6-90	NM_001003937	exon1	c.C732A	p.I244I	GCGAATGATGTCA	.	72	5	90	0	.	0	0	0	0	0
SLC1A4	6509	broad.mit.edu	37	2	65217143	65217143	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC1A4-91	NM_003038	exon1	c.C366A	p.G122G	CTTTGGCCTCACC	.	63	4	16	0	.	5	4	1	0	0
CAPG	822	bcgsc.ca	37	2	85628745	85628745	+	Silent	SNP	C	C	T	rs2229669	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CAPG-204	NM_001256140	exon4	c.G258A	p.T86T	CAGCAGCGTGTTG	.	106	5	44	0	C|0.941;T|0.059	33	33	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
DYNC1I2	1781	bcgsc.ca	37	2	172585298	172585298	+	Silent	SNP	T	T	C	rs78255103	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DYNC1I2-91	NM_001378	exon14	c.T1329C	p.D443D	TGGAGATGTCAAC	.	355	22	322	12	T|0.333;C|0.667	112	112	0	0	0
SF3B1	23451	bcgsc.ca	37	2	198257795	198257795	+	Silent	SNP	T	T	C	rs4685	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SF3B1-140	NM_012433	exon24	c.A3657G	p.V1219V	CTCAAATACATTG	.	301	10	351	1	T|0.202;G|0.145;C|0.593;A|0.059	153	153	0	0	0
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217341854	217341854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMARCAL1-293	NM_014140	exon16	c.G2450A	p.R817H	AGGACCGCGTGCA	.	86	76	98	0	.	23	1	21	0	1
TM4SF20	79853	bcgsc.ca	37	2	228243905	228243905	+	Missense_Mutation	SNP	G	G	A	rs7574414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TM4SF20-514	NM_024795	exon1	c.C80T	p.A27V	GGTATCGCATTGA	.	94	5	98	0	G|0.889;A|0.111	0	0	0	0	0
MKKS	8195	bcgsc.ca	37	20	10386013	10386013	+	Missense_Mutation	SNP	C	C	A	rs1545	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MKKS-90	NM_170784	exon6	c.G1595T	p.G532V	GCTGAGCCCACAG	.	169	8	194	0	C|0.839;A|0.161	22	22	0	0	0
MKKS	8195	bcgsc.ca	37	20	10386059	10386059	+	Missense_Mutation	SNP	G	G	A	rs1547	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MKKS-90	NM_170784	exon6	c.C1549T	p.R517C	GACGACGTGTGCT	.	135	7	128	1	G|0.836;A|0.164	24	24	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23016970	23016970	+	Missense_Mutation	SNP	T	T	G	rs3746726	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SSTR4-522	NM_001052	exon1	c.T850G	p.F284V	AACCTCTTCGTGA	.	133	6	132	0	T|0.674;G|0.326	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23017017	23017017	+	Silent	SNP	T	T	C	rs2567609	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SSTR4-522	NM_001052	exon1	c.T897C	p.L299L	TATCCTTAGCTAT	.	156	7	153	1	T|0.514;C|0.486	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23017044	23017044	+	Silent	SNP	C	C	T	rs3746728	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SSTR4-522	NM_001052	exon1	c.C924T	p.P308P	CAACCCCATTCTC	.	148	7	157	1	C|0.669;T|0.331	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628236	29628236	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FRG1B-22	.	.	.	.	AAAATGGCTTTGT	.	1002	53	842	15	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	6	0	0	C|0.769;T|0.231	0	0	0	0	0
OCSTAMP	128506	ucsc.edu;bcgsc.ca	37	20	45170556	45170556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_080721	exon3	c.C1058A	p.T353N	AGGACAGTGTATG	.	42	4	29	0	.	0	0	0	0	0
SLC9A8	23315	hgsc.bcm.edu	37	20	48429485	48429485	+	Missense_Mutation	SNP	A	A	C	rs61734269		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC9A8-91	NM_001260491	exon1	c.A26C	p.E9A	AAGAGGAGTGAGT	.	7	5	2	0	A|0.994;C|0.006	0	0	0	0	0
CECR2	27443	bcgsc.ca	37	22	18003341	18003341	+	Silent	SNP	G	G	A	rs73159550	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CECR2-70	.	.	.	.	TCTGTCGACCAGC	.	284	8	238	0	G|0.974;A|0.026	0	0	0	0	0
ZDHHC8	29801	hgsc.bcm.edu	37	22	20131121	20131121	+	Silent	SNP	G	G	C	rs145100111	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZDHHC8-91	NM_001185024	exon10	c.G1968C	p.P656P	CGCCCCGGGGCCC	.	22	22	1	0	G|0.993;C|0.007	0	0	0	0	0
AIFM3	150209	bcgsc.ca	37	22	21327589	21327589	+	Missense_Mutation	SNP	C	C	T	rs178264	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIFM3-280	NM_001146288	exon3	c.C43T	p.P15S	GCCTTGCCCACAG	.	151	6	53	0	C|0.759;T|0.241	0	0	0	0	0
SHANK3	85358	hgsc.bcm.edu	37	22	51159595	51159595	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SHANK3-69	NM_033517	exon21	c.C3292T	p.L1098L	CTTGCCCTGGCTG	.	15	15	0	0	.	7	2	5	0	0
NISCH	11188	hgsc.bcm.edu	37	3	52492817	52492817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	NISCH-93	NM_001276293	exon3	c.T317C	p.V106A	CTGGCGTGACCCC	.	62	4	68	0	.	7	7	0	0	0
STAB1	23166	bcgsc.ca	37	3	52556369	52556369	+	Silent	SNP	C	C	T	rs35325270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	STAB1-139	NM_015136	exon60	c.C6489T	p.H2163H	GTGCCACGCAGGC	.	129	6	54	0	C|0.850;T|0.150	4	3	1	0	0
MYLK	4638	bcgsc.ca	37	3	123452838	123452838	+	Silent	SNP	G	G	A	rs4678047	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYLK-365	NM_053025	exon10	c.C1005T	p.T335T	GACCGGGGTCTGC	.	104	6	46	0	A|0.608;G|0.392	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183951125	183951125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_138345	exon3	c.C470A	p.T157N	TGCTCACCCCGCT	.	35	32	1	0	.	20	0	20	0	0
MUC4	4585	bcgsc.ca	37	3	195506147	195506147	+	Missense_Mutation	SNP	G	G	T	rs200473856	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C12304A	p.L4102I	AGGAAAGGCTGGT	.	152	35	238	7	G|0.981;A|0.019	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507237	195507237	+	Silent	SNP	G	G	A	rs199776180		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C11214T	p.S3738S	ACCTGTGGATGCT	.	980	54	338	6	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195508546	195508546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C9905A	p.T3302N	GAGGAAGTCTCGG	.	424	26	220	2	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	1002	89	600	15	G|0.998;A|0.002	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511959	195511959	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C6492T	p.T2164T	AGTGTCGGTGACA	.	711	41	493	9	.	0	0	0	0	0
CRIPAK	285464	ucsc.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	231	32	11	0	A|0.993;C|0.000;G|0.006	59	10	0	49	0
CRIPAK	285464	ucsc.edu	37	4	1388850	1388850	+	Missense_Mutation	SNP	C	C	T	rs78729943	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.C551T	p.T184M	TGCCAACGTGGAG	.	233	29	11	0	C|0.500;T|0.500	8	8	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	235	27	15	0	A|0.994;C|0.006	96	8	88	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	37	6	1	0	.	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38138932	38138932	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TBC1D1-91	NM_015173	exon20	c.G3483A	p.T1161T	GTGCACGCAGCCC	.	44	26	3	0	.	43	16	26	1	0
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103644191	103644191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MANBA-91	NM_005908	exon4	c.A386G	p.D129G	GTAATATCAAAGC	.	120	48	78	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	7	6	0	0	C|0.454;G|0.546	4	0	4	0	0
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21752043	21752043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CDH12-92	NM_004061	exon15	c.G2188T	p.A730S	GTGGGGCAGTTGG	.	350	131	162	1	.	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90124769	90124769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GPR98-103	NM_032119	exon77	c.G16377T	p.Q5459H	ACCACAGGTTGAA	.	32	22	27	0	.	0	0	0	0	0
PCDHB3	56132	ucsc.edu	37	5	140482312	140482312	+	Silent	SNP	A	A	G	rs429364	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PCDHB3-92	NM_018937	exon1	c.A2079G	p.A693A	GGTGGCATTGGCC	.	138	37	11	0	A|0.977;G|0.023	24	20	4	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A	rs201040133		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ATXN1-93	NM_001128164	exon7	c.G648T	p.Q216H	CTGCTGCTGCTGC	.	76	6	6	0	.	5	5	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327900	16327900	+	Missense_Mutation	SNP	C	C	A	rs200111316		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ATXN1-93	NM_001128164	exon7	c.G642T	p.Q214H	CTGCTGCTGCTGC	.	71	6	5	0	.	0	0	0	0	0
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797691	29797691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HLA-G-517	NM_002127	exon6	c.T994C	p.W332R	GTGCTGTGGAGAA	.	272	125	163	0	.	0	0	0	0	0
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30866949	30866949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DDR1-1403	NM_013994	exon17	c.C2636T	p.P879L	CCCGGCCGCCTGC	.	198	91	102	0	.	289	128	161	0	0
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32006983	32006983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CYP21A2-68	.	.	.	.	TGACTCCATGGAG	.	480	199	214	0	.	1524	832	692	0	0
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TNXB-90	NM_019105	exon3	c.2116_2117del	p.706_706del	CCCTCTACACACA	.	618	11	150	0	.	0	0	0	0	0
DNAH8	1769	bcgsc.ca	37	6	38800209	38800209	+	Silent	SNP	T	T	C	rs1678729	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DNAH8-615	NM_001206927	exon31	c.T4300C	p.L1434L	TATGAATTGGTAA	.	164	6	114	1	T|0.758;C|0.242	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	7	7	0	0	T|0.441;C|0.559	0	0	0	0	0
TMEM151B	441151	hgsc.bcm.edu	37	6	44243154	44243154	+	Silent	SNP	C	C	T	rs12194552	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001137560	exon3	c.C591T	p.R197R	CGAACGCGTCAAC	.	25	12	0	0	C|0.967;T|0.033	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968127	106968127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1820T	p.S607F	AACACTCTCATTG	.	139	51	108	0	.	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968157	106968157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1850T	p.S617F	CAAAATCTGGCCC	.	135	53	108	0	.	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968170	106968170	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1863T	p.V621V	ACAAGTCATACCG	.	136	47	106	0	.	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106968184	106968184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1877T	p.S626L	CAGCATCAGAGAA	.	133	46	110	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106968204	106968204	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1897T	p.Q633X	CCTATTCAGGCTC	.	147	51	121	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968252	106968252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1945T	p.P649S	TCCAGTCCCACCA	.	179	64	149	0	.	2	2	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968291	106968291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1984T	p.P662S	GCCACTCCTCAAA	.	172	61	156	0	.	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968355	106968355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C2048T	p.S683F	ACATTTCTGCTGG	.	105	35	95	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978066	106978066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon6	c.C3370T	p.H1124Y	GTTAGTCACATTG	.	178	85	100	0	.	0	0	0	0	0
TRAF3IP2	10758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111912951	111912951	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TRAF3IP2-228	NM_147686	exon2	c.C339T	p.V113V	CTCGCTGACTGCA	.	142	70	86	1	.	13	9	4	0	0
TCP10	6953	bcgsc.ca	37	6	167789493	167789493	+	Missense_Mutation	SNP	T	T	C	rs3010590	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TCP10-89	NM_004610	exon6	c.A649G	p.T217A	GCGTGGTGGCCTG	.	75	6	68	2	T|0.760;C|0.240	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MICALL2-90	NM_182924	exon6	c.T1134C	p.G378G	TCCCCCACCCTGG	.	7	7	0	0	A|0.009;G|0.991	6	0	6	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4874729	4874729	+	Missense_Mutation	SNP	C	C	G	rs144507770		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon4	c.G925C	p.G309R	CCTGGCCGCTGTC	.	57	28	0	0	C|0.987;G|0.013	1	0	1	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4876100	4876100	+	Silent	SNP	G	G	A	rs138811640		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon3	c.C672T	p.N224N	CAGGGCGTTCACT	.	26	21	0	0	G|0.987;A|0.013	2	2	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	34	14	2	0	T|0.731;G|0.269	8	4	4	0	0
REPIN1	29803	hgsc.bcm.edu	37	7	150069548	150069548	+	Silent	SNP	C	C	G	rs187957325	by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	REPIN1-69	NM_001099695	exon3	c.C1389G	p.A463A	CTGCGCCGAGTGC	.	20	10	0	0	C|0.995;G|0.005	39	21	18	0	0
CRYGN	155051	hgsc.bcm.edu	37	7	151136989	151136989	+	Silent	SNP	C	C	T	rs116501631	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRYGN-90	NM_144727	exon1	c.G15A	p.S5S	CTTCCCCGAGCGC	.	47	21	3	0	C|0.983;T|0.017	0	0	0	0	0
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125109589	125109589	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FER1L6-100	NM_001039112	exon36	c.G4773A	p.R1591R	TCCAAGGCGACCC	.	146	61	100	0	.	0	0	0	0	0
TOP1MT	116447	ucsc.edu;bcgsc.ca	37	8	144411548	144411548	+	Missense_Mutation	SNP	C	C	T	rs147714048	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TOP1MT-91	NM_052963	exon3	c.G332A	p.R111Q	TTCTTCCGGAAAA	.	199	67	124	3	C|0.999;T|0.001	16	8	8	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144992385	144992385	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PLEC-141	NM_201380	exon32	c.C12015T	p.D4005D	GGTGCCGTCGTCA	.	13	7	0	0	.	35	20	15	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	14	14	1	0	G|0.572;C|0.428	2	0	2	0	0
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	15724809	15724809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_173550	exon14	c.G1527T	p.E509D	TAAAGAGTTAAGT	.	186	69	129	0	.	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	25	24	0	0	G|0.807;C|0.193	22	0	22	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101984048	101984048	+	Silent	SNP	G	G	C	rs35055733	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ALG2-92	NM_033087	exon1	c.C129G	p.R43R	ACACCCGCGCGCC	.	17	11	0	0	G|0.984;C|0.016	39	14	25	0	0
PPAPDC3	84814	hgsc.bcm.edu	37	9	134183371	134183371	+	Silent	SNP	G	G	A	rs61731644	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PPAPDC3-153	NM_032728	exon2	c.G513A	p.P171P	CGGCCCGTACGAG	.	23	12	0	0	G|0.993;A|0.007	10	0	10	0	0
KIAA1984	84960	hgsc.bcm.edu	37	9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	rs35342663	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KIAA1984-91	NM_001039374	exon4	c.C430A	p.L144M	CTGCGGCTGCTGC	.	31	22	0	0	C|0.928;A|0.072	0	0	0	0	0
ARSE	415	bcgsc.ca	37	X	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	rs35143646	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ARSE-131	NM_000047	exon9	c.G1270A	p.G424S	CCTCGCCGCCCGC	.	404	10	149	1	C|0.503;T|0.497	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53430781	53430781	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMC1A-232	NM_006306	exon14	c.C2241G	p.R747R	ATTAATGCGAGGC	.	150	62	110	0	.	45	19	25	1	0
BEX2	84707	ucsc.edu;bcgsc.ca	37	X	102564587	102564587	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	BEX2-109	NM_001168399	exon3	c.T414C	p.H138H	CAAACTATGACTC	.	552	256	264	3	.	0	0	0	0	0
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120009056	120009056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001145718	exon1	c.G469A	p.A157T	CAGCAGCGTGGGG	.	622	255	116	0	.	0	0	0	0	0
MIR205HG	642587	hgsc.bcm.edu	37	1	209605636	209605637	+	In_Frame_Ins	INS	-	-	AGC	rs3842530	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001104548	exon4	c.251_252insAGC	p.V84delinsVA	CCACCGTAGCAGC	.	66	23	21	0	.	0	0	0	0	0
LPHN1	22859	broad.mit.edu	37	19	14272185	14272186	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	LPHN1-523	NM_001008701	exon7	c.1464_1465insG	p.V488fs	CCACTGGACCCGC	.	112	6	7	0	.	0	0	0	0	0
POU2F2	5452	broad.mit.edu	37	19	42596242	42596243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	POU2F2-227	NM_001207025	exon13	c.1379_1380insT	p.S460fs	AGGCCTGACAAGC	.	126	6	41	0	.	0	0	0	0	0
C21orf58	54058	broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGG	rs71318063	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C21orf58-91	NM_058180	exon8	c.897_898insCCA	p.H299delinsHH	CACAGCATGGTGG	.	41	25	4	0	-|0.500;TGG|0.500	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959652	183959653	+	In_Frame_Ins	INS	-	-	GAGTGGGAACTGACAGCG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_138345	exon19	c.3555_3556insGAGTGGGAACTGACAGCG	p.D1185delinsDEWELTA	CTTCGACGAGTGG	.	78	9	1	0	.	0	0	0	0	0
RADIL	55698	broad.mit.edu	37	7	4843213	4843214	+	In_Frame_Ins	INS	-	-	CTGCCAGGG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon11	c.2463_2464insCCCTGGCAG	p.R821delinsSPGR	GCCAGGCCTGCCA	.	68	15	10	0	.	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGC	rs139315731	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_203403	exon1	c.147_148insGGCGGC	p.G49delinsGGG	TGGTGGTGGCGGC	.	61	16	5	0	.	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12855598	12855599	+	Missense_Mutation	DNP	AC	AC	TG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRAMEF1-22	NM_023013	exon4	c.C879G	p.N293M	CCAGAACCCCTTG	.	24	0	81	0	.	0	0	0	0	0
PRAMEF2	65122	bcgsc.ca	37	1	12921087	12921088	+	Missense_Mutation	DNP	AC	AC	TG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRAMEF2-68	NM_023014	exon4	c.C879G	p.N293M	CCAGAACCCCTTG	.	18	0	40	0	C|0.994;G|0.006	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	106968247	106968248	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1941T	p.S647F	TGAATCCAGTCCC	.	174	15	147	0	.	0	0	0	0	0