Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	4	4	0	0	A|0.047;C|0.953	0	0	0	0	0
AHDC1	27245	hgsc.bcm.edu	37	1	27877423	27877423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	AHDC1-90	NM_001029882	exon6	c.G1204T	p.G402X	TGCGTCCCCGTCC	.	25	22	2	0	.	16	1	15	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227246	38227246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	EPHA10-1246	NM_001099439	exon3	c.G681C	p.E227D	GGCGCTCTCGGCT	.	52	37	7	0	.	0	0	0	0	0
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55349290	55349290	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	DHCR24-91	NM_014762	exon3	c.387+1G>T	.	CTCTCACCTGTTT	.	123	10	121	0	.	0	0	0	0	0
SRSF11	9295	broad.mit.edu	37	1	70694110	70694110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SRSF11-227	NM_004768	exon3	c.C209T	p.S70L	GTGATTCGCCTTT	.	85	5	82	2	.	0	0	0	0	0
INSRR	3645	broad.mit.edu;bcgsc.ca	37	1	156810733	156810733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	INSRR-1403	NM_014215	exon22	c.G3826A	p.D1276N	CTGCATCGGTGGT	.	115	6	128	0	.	0	0	0	0	0
FCRL5	83416	bcgsc.ca	37	1	157514091	157514091	+	Missense_Mutation	SNP	C	C	T	rs12036228	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FCRL5-156	NM_031281	exon5	c.G805A	p.V269I	ATATGACGCTGTA	.	119	5	131	0	C|0.772;T|0.228	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	5	5	0	0	T|0.229;C|0.771	3	0	3	0	0
RGS21	431704	hgsc.bcm.edu	37	1	192335239	192335239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RGS21-92	NM_001039152	exon5	c.G444T	p.W148C	AAAATGGCTCCCT	.	16	4	22	0	.	0	0	0	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	IDI1-90	NM_004508	exon1	c.G38A	p.C13Y	GCCGCGCAGCCAA	.	10	10	0	0	C|0.981;T|0.019	2	0	2	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	9	7	0	0	T|0.623;G|0.377	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001134363	exon1	c.G90A	p.R30R	TGCCCGGGCGTCC	.	15	14	1	0	G|0.808;A|0.192	0	0	0	0	0
FGFR2	2263	broad.mit.edu	37	10	123246935	123246935	+	Missense_Mutation	SNP	G	G	A	rs113014479		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FGFR2-2607	NM_022970	exon15	c.C1993T	p.R665W	GAAGCCGCCCCTG	.	75	5	82	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	105	59	149	2	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	100	32	164	0	C|1.000;|0.000	0	0	0	0	0
FNBP4	23360	bcgsc.ca	37	11	47745589	47745589	+	Missense_Mutation	SNP	T	T	C	rs34242224	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FNBP4-91	NM_015308	exon14	c.A2455G	p.I819V	TAGCTATAGCTGA	.	50	4	65	0	T|0.943;C|0.057	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	14	0	14	0	0
FGF4	2249	hgsc.bcm.edu	37	11	69589556	69589556	+	Silent	SNP	G	G	A	rs11600280	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FGF4-1270	NM_002007	exon1	c.C297T	p.L99L	GTCGGGGAGCGCC	.	7	7	0	0	G|0.967;A|0.033	0	0	0	0	0
KCTD14	65987	ucsc.edu	37	11	77734209	77734209	+	Silent	SNP	T	T	C	rs11237362	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	KCTD14-92	NM_023930	exon1	c.A87G	p.P29P	TACCGTTGGCCGC	.	75	8	19	1	T|0.290;C|0.710	0	0	0	0	0
CASP5	838	hgsc.bcm.edu;broad.mit.edu	37	11	104872901	104872901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CASP5-661	NM_001136112	exon5	c.C610A	p.R204S	GTCTGCGGTCCTC	.	80	4	100	0	.	0	0	0	0	0
ENO2	2026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7025042	7025042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ENO2-226	NM_001975	exon2	c.G46A	p.G16R	TCCCGCGGGAACC	.	126	66	69	0	.	15	9	6	0	0
TAS2R42	353164	bcgsc.ca	37	12	11338970	11338970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TAS2R42-69	NM_181429	exon1	c.C574A	p.P192T	AAAAGGGGATAAA	.	55	4	42	0	.	0	0	0	0	0
MGST1	4257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16516930	16516933	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MGST1-90	NM_020300	exon4	c.423_426del	p.141_142del	AGTTACTCTTTCC	.	166	58	108	0	.	0	0	0	0	0
LHX5	64211	hgsc.bcm.edu	37	12	113901232	113901232	+	Silent	SNP	T	T	C	rs202131487		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	LHX5-90	NM_022363	exon5	c.A972G	p.G324G	CAGCGCTCCCAGC	.	14	7	1	0	.	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FBRSL1-70	NM_001142641	exon17	c.C2507T	p.A836V	AGGAGGCCGCCAA	.	9	9	0	0	C|0.470;T|0.530	1	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32783790	32783790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FRY-142	NM_023037	exon33	c.G4344T	p.W1448C	GAAATGGAGCAAC	.	123	4	133	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	68	4	20	0	.	10	10	0	0	0
DHRS4L1	728635	broad.mit.edu	37	14	24513024	24513024	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001082488	exon4	c.365delG	p.R122fs	AGAAAAGAGGGTT	.	9	3	8	0	.	0	0	0	0	0
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67578631	67578631	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GPHN-228	NM_020806	exon15	c.T1467C	p.D489D	CCAAGATATCAGG	.	150	118	154	0	.	0	0	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	IRF2BPL-90	NM_024496	exon1	c.369_374del	p.123_125del	TGTTGTTGCTGCT	.	11	6	9	0	CTG|1.000;|0.000	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	EXOC3L4-23	NM_001077594	exon2	c.A669G	p.E223E	GGAGGAAGCCCAC	.	5	4	0	0	A|0.486;G|0.514	0	0	0	0	0
EMC7	56851	broad.mit.edu	37	15	34388183	34388183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_020154	exon2	c.C269A	p.P90H	CCAGAAGGTATAT	.	80	4	100	1	.	25	25	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414119	63414119	+	Missense_Mutation	SNP	G	G	A	rs139879323		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	LACTB-90	NM_171846	exon1	c.G49A	p.G17S	CCCGGGGGCTTGG	.	7	7	0	0	G|0.979;A|0.021	3	0	3	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	9	6	0	0	C|0.452;T|0.548	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	9	9	0	0	T|0.007;C|0.993	1	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PKD1-91	NM_000296	exon22	c.T8087G	p.L2696R	AGGATGAGCATCA	.	244	6	87	1	.	15	4	11	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	31	19	0	0	G|0.793;A|0.207	8	8	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	19547801	19547801	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CCP110-90	NM_001199022	exon4	c.810delG	p.V270fs	TGAAGTGGCTGAC	.	178	75	108	0	.	0	0	0	0	0
HIRIP3	8479	broad.mit.edu	37	16	30005028	30005028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	HIRIP3-90	NM_001197323	exon4	c.C403A	p.L135I	ACAGGAGCCCAAC	.	44	6	24	0	.	40	36	4	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	5	5	0	0	T|0.035;G|0.004	0	0	0	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876806	67876829	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	-	rs111586870	byfrequency;alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	THAP11-90	NM_020457	exon1	c.349_372del	p.117_124del	CAGCAACAGCAGC	.	54	24	9	0	-|0.667;CAG|0.333	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	17	0	1	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	C16orf3-90	NM_001214	exon1	c.G193A	p.G65S	GGCAGCCTACGGG	.	118	9	29	0	C|0.500;T|0.500	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	12	12	0	0	C|0.015;A|0.985	0	0	0	0	0
LLGL2	3993	bcgsc.ca	37	17	73565171	73565171	+	Missense_Mutation	SNP	T	T	C	rs1671021	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	LLGL2-251	NM_004524	exon13	c.T1435C	p.F479L	GAGAACTTCAGTG	.	116	5	111	0	T|0.485;C|0.514	7	7	0	0	0
POTEC	388468	broad.mit.edu	37	18	14542740	14542740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	POTEC-3	NM_001137671	exon1	c.C406T	p.R136C	CTCGACGGACGTG	.	645	12	536	1	.	0	0	0	0	0
LOXHD1	125336	broad.mit.edu;bcgsc.ca	37	18	44149474	44149474	+	Silent	SNP	G	G	A	rs2086005	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_144612	exon16	c.C2175T	p.N725N	GAGGTTGTTGTCA	.	215	7	193	1	G|0.917;A|0.083	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	22	20	0	0	C|0.766;T|0.234	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	6	6	1	0	G|0.749;A|0.251	0	0	0	0	0
ATP8B3	148229	hgsc.bcm.edu;bcgsc.ca	37	19	1806115	1806115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_138813	exon8	c.G731A	p.R244H	TCCTTGCGGAGAC	.	63	4	80	0	.	2	2	0	0	0
PLIN5	440503	broad.mit.edu	37	19	4525688	4525688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PLIN5-22	NM_001013706	exon6	c.G677A	p.R226H	TGGGCACGGTGTT	.	124	4	131	0	.	0	0	0	0	0
RDH8	50700	broad.mit.edu	37	19	10132072	10132072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RDH8-94	NM_015725	exon5	c.G738T	p.K246N	CAGGAAGCTGTTT	.	113	3	96	0	.	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu	37	19	17392779	17392779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_152363	exon1	c.A50C	p.E17A	TGCGGGAGGAGGA	.	11	9	3	0	.	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NUDT19-22	NM_001105570	exon1	c.G486C	p.P162P	ACCGCCGGGCCTG	.	9	8	1	0	G|0.743;C|0.257	0	0	0	0	0
IGFLR1	79713	hgsc.bcm.edu	37	19	36231288	36231288	+	Missense_Mutation	SNP	C	C	T	rs140952221	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	IGFLR1-90	NM_024660	exon3	c.G335A	p.C112Y	TCTCTGCAGCGCC	.	17	4	2	0	C|0.989;T|0.011	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	8	8	0	0	T|0.545;C|0.455	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	37	26	2	0	T|0.861;C|0.139	1356	2	1354	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	124	43	87	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	97	29	85	0	.	0	0	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT	.	55	6	71	0	.	2	2	0	0	0
ZSCAN1	284312	hgsc.bcm.edu	37	19	58549354	58549354	+	Silent	SNP	C	C	T	rs113374422	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZSCAN1-92	NM_182572	exon3	c.C150T	p.S50S	GGCGAGCGGGCCG	.	34	7	2	0	C|0.975;T|0.025	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	7	7	0	0	G|0.301;C|0.699	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	92	25	32	4	.	1	1	0	0	0
RMND5A	64795	broad.mit.edu	37	2	86997248	86997248	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RMND5A-92	NM_022780	exon7	c.T957A	p.P319P	ATTACCTGTGAGT	.	104	3	116	0	.	0	0	0	0	0
SMPD4	55627	ucsc.edu	37	2	130910188	130910188	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SMPD4-90	NM_017951	exon20	c.T2541C	p.Y847Y	GAGGACATAGCCC	.	231	1	179	0	.	39	27	12	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	9	9	0	0	A|0.165;G|0.835	1	0	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	769	40	686	16	.	43	39	4	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	7	7	0	0	C|0.999;T|0.001	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	94	6	11	0	A|0.979;G|0.021	169	156	13	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	50	14	1	0	.	129	116	13	0	0
DIDO1	11083	broad.mit.edu;bcgsc.ca	37	20	61541101	61541101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	DIDO1-96	NM_080797	exon4	c.G1111A	p.E371K	CTTTCTCAATTCT	.	320	11	162	0	.	18	17	1	0	0
CHRNA4	1137	hgsc.bcm.edu	37	20	61992467	61992467	+	Silent	SNP	C	C	T	rs79739740		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CHRNA4-91	NM_000744	exon1	c.G51A	p.L17L	CAGAAGCAGCAGC	.	6	6	0	0	G|0.977;A|0.023	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	15	14	0	0	C|0.802;G|0.198	1	1	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	16	15	0	0	G|0.803;A|0.197	1	1	0	0	0
KRTAP10-5	386680	ucsc.edu;bcgsc.ca	37	21	46000064	46000064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	KRTAP10-5-90	NM_198694	exon1	c.G392A	p.C131Y	GGCACACAGCAGG	.	407	305	340	3	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	7	6	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	7	4	0	0	G|0.826;C|0.174	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	219	61	250	0	A|0.500;T|0.500	18	18	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NEFH-90	NM_021076	exon4	c.1970_1975del	p.657_659del	CAGAGAAGGAAGA	.	216	28	266	0	.	0	0	0	0	0
TMPRSS6	164656	broad.mit.edu;bcgsc.ca	37	22	37462232	37462232	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TMPRSS6-292	NM_153609	exon18	c.G2324A	p.W775X	AGGAACCAGCGGC	.	133	5	139	0	.	3	3	0	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45255679	45255679	+	Missense_Mutation	SNP	G	G	A	rs147192731	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PRR5-ARHGAP8-161	NM_181334	exon14	c.G1312A	p.V438I	AACTACGTCGTCC	.	37	3	43	0	G|0.999;A|0.001	1	1	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	C22orf26-90	NM_018280	exon1	c.C83T	p.P28L	GGGTTGGGGGGGG	.	6	6	0	0	A|0.248;C|0.000;G|0.752	0	0	0	0	0
TMEM42	131616	hgsc.bcm.edu	37	3	44903434	44903434	+	Silent	SNP	G	G	C	rs2292181	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TMEM42-90	NM_144638	exon1	c.G18C	p.G6G	GCCGGGGCCTCCG	.	8	6	1	0	G|0.938;C|0.062	6	0	6	0	0
MST1	4485	bcgsc.ca	37	3	49725034	49725034	+	Missense_Mutation	SNP	T	T	A	rs142964215	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MST1-278	NM_020998	exon3	c.A310T	p.T104S	GCCTCGTGTGGGG	.	298	36	349	9	T|0.938;A|0.062	2	2	0	0	0
MST1	4485	bcgsc.ca	37	3	49725038	49725038	+	Silent	SNP	G	G	C	rs116125078	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MST1-278	NM_020998	exon3	c.C306G	p.P102P	CGTGTGGGGCGAG	.	294	35	353	9	G|0.928;C|0.072	1	1	0	0	0
MST1	4485	bcgsc.ca	37	3	49725086	49725086	+	Silent	SNP	G	G	A	rs201833731	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MST1-278	NM_020998	exon3	c.C258T	p.N86N	GCTCACGTTGTAG	.	214	21	288	10	G|0.712;A|0.287	3	3	0	0	0
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50379278	50379278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZMYND10-279	NM_015896	exon10	c.A1084T	p.S362C	AGGGGCTGAACAC	.	68	5	91	0	.	2	2	0	0	0
PDHB	5162	broad.mit.edu	37	3	58413810	58413810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PDHB-91	NM_000925	exon10	c.C1031A	p.P344H	ACCTGAGGTATAG	.	90	4	111	0	.	77	77	0	0	0
MORC1	27136	broad.mit.edu	37	3	108819313	108819313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MORC1-98	NM_014429	exon5	c.C265T	p.R89W	ACAGCCGTTTTTT	.	168	5	159	0	.	0	0	0	0	0
EIF2A	83939	ucsc.edu;bcgsc.ca	37	3	150280445	150280445	+	Missense_Mutation	SNP	C	C	G	rs1132979	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	EIF2A-22	NM_032025	exon4	c.C290G	p.T97S	CTTACACTAGTAA	.	63	6	69	0	C|0.634;G|0.366	1	1	0	0	0
RTP1	132112	broad.mit.edu	37	3	186917498	186917498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RTP1-155	NM_153708	exon2	c.C432A	p.S144R	GTCCAGCATGCTG	.	289	8	82	1	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506692	195506692	+	Missense_Mutation	SNP	C	C	G	rs142466346	alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MUC4-90	NM_018406	exon2	c.G11759C	p.R3920P	GGAAGACGGGTGG	.	96	19	319	10	C|0.903;T|0.097	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506704	195506704	+	Missense_Mutation	SNP	T	T	C	rs201760283		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MUC4-90	NM_018406	exon2	c.A11747G	p.D3916G	GTGTCATCTGTGG	.	93	19	312	9	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506712	195506712	+	Silent	SNP	A	A	T	rs199930420		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MUC4-90	NM_018406	exon2	c.T11739A	p.A3913A	TGTGGAAGCTGAG	.	100	25	308	13	.	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	6	6	0	0	G|0.440;A|0.560	0	0	0	0	0
RBPJ	3516	bcgsc.ca	37	4	26417136	26417136	+	Silent	SNP	T	T	C	rs2270226	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RBPJ-659	NM_005349	exon5	c.T234C	p.S78S	GGGCAGTGGATGG	.	243	9	217	2	T|0.487;C|0.513	1	1	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536550	88536550	+	Silent	SNP	T	T	C	rs145589857		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	DSPP-90	NM_014208	exon5	c.T2736C	p.S912S	CAGCAGTGACAGC	.	733	21	743	8	.	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	24	8	0	0	T|0.735;G|0.265	0	0	0	0	0
DAB2	1601	broad.mit.edu	37	5	39376905	39376905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	DAB2-227	NM_001343	exon12	c.C1984A	p.Q662K	GTGGCTGCCGCAG	.	85	5	74	4	.	15	13	1	0	1
JAKMIP2	9832	broad.mit.edu	37	5	147011063	147011064	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	JAKMIP2-154	NM_001270941	exon14	c.1787_1788del	p.596_596del	GGATCGTCTCTCT	.	112	7	65	0	.	0	0	0	0	0
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161277848	161277848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GABRA1-93	NM_001127644	exon2	c.T32A	p.L11H	ACTGTCTTTGGGC	.	137	56	65	0	.	0	0	0	0	0
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180275938	180275938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001172638	exon2	c.T2557A	p.S853T	GATTTGATCTGAT	.	194	80	135	0	.	1	1	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	5	5	0	0	A|0.006;G|0.994	0	0	0	0	0
PNPLA1	285848	bcgsc.ca	37	6	36275458	36275458	+	Missense_Mutation	SNP	T	T	C	rs4713956	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PNPLA1-137	NM_001145717	exon8	c.T1564C	p.S522P	AGACATTCGGGAT	.	236	7	256	3	C|0.644;N|0.000	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	11	10	0	0	T|0.441;C|0.559	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	6	6	0	0	C|0.673;A|0.327	2	0	2	0	0
RIMS1	22999	broad.mit.edu;bcgsc.ca	37	6	73100417	73100417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RIMS1-144	NM_014989	exon30	c.A4484G	p.N1495S	GCATCAACAGTTA	.	184	9	190	0	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	22	16	0	0	G|0.456;C|0.544	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SP8-91	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	17	7	0	0	.	1	0	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	16	16	0	0	C|0.329;G|0.671	9	0	9	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	7	5	0	0	G|0.565;A|0.435	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	27	13	0	0	C|0.663;G|0.337	1	0	1	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733121	52733121	+	Silent	SNP	G	G	A	rs147382324	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PCMTD1-68	NM_052937	exon6	c.C864T	p.Y288Y	AAATACGTAAGTG	.	227	11	225	4	G|0.999;A|0.001	15	15	0	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	rs111785933		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PCMTD1-68	NM_052937	exon6	c.T842C	p.V281A	TGTTTAACTCTCT	.	239	13	239	4	A|0.500;G|0.500	4	4	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	27	17	0	0	T|0.935;A|0.065	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	36	14	1	0	T|0.642;G|0.358	0	0	0	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967768	72967768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TRPA1-230	NM_007332	exon12	c.G1432A	p.G478S	GGTCACCTTCATT	.	557	225	345	0	.	1	0	1	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	12	12	0	0	.	0	0	0	0	0
CYP11B1	1584	bcgsc.ca	37	8	143957192	143957192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CYP11B1-94	NM_000497	exon6	c.G1057A	p.E353K	GATGTTCACTGAT	.	415	152	200	3	.	3005	1344	1658	1	2
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	7	7	0	0	A|0.118;G|0.882	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	16	16	0	0	G|0.992;C|0.006	1	0	1	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832928	5832928	+	Missense_Mutation	SNP	G	G	C	rs13283149	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ERMP1-69	NM_024896	exon1	c.C100G	p.R34G	GCGCTCGGGCCTC	.	6	6	0	0	G|0.987;C|0.013	0	0	0	0	0
GADD45G	10912	hgsc.bcm.edu;bcgsc.ca	37	9	92220669	92220669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GADD45G-514	NM_006705	exon3	c.243delC	p.I81fs	GCTGATCCAGGCT	.	143	89	105	2	.	0	0	0	0	0
PPAPDC3	84814	ucsc.edu;bcgsc.ca	37	9	134183503	134183503	+	Silent	SNP	T	T	C	rs2986606	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PPAPDC3-153	NM_032728	exon2	c.T645C	p.R215R	CCTGCGTGTGCTG	.	77	69	15	1	T|0.343;C|0.657	1	0	1	0	0
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132159761	132159761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	USP26-661	NM_031907	exon1	c.G2488C	p.V830L	GGCTGACAACACT	.	34	33	46	0	.	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	38	15	53	1	.	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	.	.	.	.	TCCCCTACGTCGG	.	49	27	33	1	.	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	PAQR4-68	NM_152341	exon1	c.106_107insC	p.S36fs	AGCGGCTCGGGCT	.	258	9	42	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	291	7	326	0	.	0	0	0	0	0