Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577408	16577408	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FBXO42-228	NM_018994	exon10	c.G1911A	p.Q637Q	CATACTCTGGTAT	.	163	92	148	0	.	14	6	8	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	12	12	0	0	G|0.061;T|0.939	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904000	47904000	+	Missense_Mutation	SNP	G	G	A	rs78469326	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FOXD2-226	NM_004474	exon1	c.G193A	p.A65T	GCCGAGGCAGACT	.	9	9	4	0	G|0.887;A|0.113	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	rs2405913		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FOXD2-226	NM_004474	exon1	c.G1102C	p.A368P	TTCTACGCGGCGT	.	4	4	0	0	G|0.835;C|0.165	0	0	0	0	0
LEFTY1	10637	hgsc.bcm.edu	37	1	226075608	226075608	+	Silent	SNP	G	G	A	rs12753531	byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	LEFTY1-90	NM_020997	exon2	c.C375T	p.V125V	CTTGGGGACCGGC	.	7	7	0	0	G|0.827;A|0.173	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	24	20	0	0	C|0.643;T|0.357	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248756893	248756893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OR2T10-69	NM_001004693	exon1	c.G177A	p.M59I	GAAGTACATGGGA	.	208	14	240	0	.	0	0	0	0	0
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13154589	13154589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OPTN-70	NM_001008212	exon5	c.A506G	p.N169S	AGCTGAACTCCAG	.	104	91	109	0	.	111	0	111	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PWWP2B-90	NM_001098637	exon2	c.G1032A	p.E344E	CAGCGAGCACGAG	.	11	11	0	0	G|0.909;A|0.091	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	13	13	0	0	C|0.860;T|0.140	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806V	TGGAGTTGCTTCC	.	6	6	1	0	T|0.470;C|0.530	5	0	5	0	0
EFCAB4A	283229	hgsc.bcm.edu	37	11	830120	830120	+	Missense_Mutation	SNP	A	A	G	rs145926870		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EFCAB4A-90	NM_173584	exon5	c.A593G	p.Q198R	TGGAGCAGGCGCT	.	18	16	4	0	A|0.976;G|0.024	0	0	0	0	0
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1606121	1606150	+	In_Frame_Del	DEL	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KRTAP5-1-44	NM_001005922	exon1	c.330_359del	p.110_120del	CCGGAACCACAGC	.	89	0	85	0	.	0	0	0	0	0
KRTAP5-2	440021	bcgsc.ca	37	11	1619181	1619181	+	Silent	SNP	G	G	A	rs61869704		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KRTAP5-2-44	NM_001004325	exon1	c.C300T	p.S100S	CCCACAGGAGCCA	.	52	9	41	1	G|0.500;A|0.500	0	0	0	0	0
KRTAP5-2	440021	bcgsc.ca	37	11	1619184	1619184	+	Silent	SNP	G	G	A	rs36134435		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KRTAP5-2-44	NM_001004325	exon1	c.C297T	p.G99G	ACAGGAGCCACAG	.	50	9	41	1	G|0.500;A|0.500	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498648	71498648	+	Silent	SNP	A	A	G	rs12277291	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FAM86C1-90	NM_152563	exon1	c.A66G	p.A22A	CCTGGCAGCGCGC	.	9	9	0	0	A|0.630;G|0.370	1	0	1	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	12	12	0	0	.	0	0	0	0	0
STT3A	3703	bcgsc.ca	37	11	125479363	125479363	+	Silent	SNP	G	G	A	rs2241502	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	STT3A-90	NM_152713	exon10	c.G996A	p.S332S	CTACTCGCTGCTG	.	123	6	107	0	G|0.581;A|0.419	43	43	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	495	29	251	14	G|0.998;A|0.002	1377	840	536	1	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	157	8	93	1	.	130	130	0	0	0
TSPAN31	6302	hgsc.bcm.edu;bcgsc.ca	37	12	58140369	58140372	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CAGA	CAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TSPAN31-446	NM_005981	exon4	c.313_313del	p.105_105del	ATCTTTCAGACAG	.	257	99	124	2	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	6	5	2	0	G|0.588;C|0.412	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	24	21	1	1	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	32	16	5	0	T|0.767;C|0.233	0	0	0	0	0
EP400	57634	broad.mit.edu	37	12	132547094	132547096	+	In_Frame_Del	DEL	CAG	CAG	-	rs113304321	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EP400-520	NM_015409	exon47	c.8182_8184del	p.2728_2728del	CAACAACAGCAGC	.	284	12	112	0	-|0.500;AG|0.500	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FBRSL1-70	NM_001142641	exon17	c.C2507T	p.A836V	AGGAGGCCGCCAA	.	10	4	0	0	C|0.470;T|0.530	3	0	3	0	0
SAP18	10284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21715115	21715115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SAP18-226	NM_005870	exon2	c.G220A	p.E74K	TCCAGCGAGTTGC	.	102	92	77	0	.	221	5	216	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	6	6	0	0	C|0.569;G|0.431	2	0	2	0	0
RPS6KL1	83694	bcgsc.ca	37	14	75386576	75386576	+	Missense_Mutation	SNP	G	G	A	rs2286913	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	RPS6KL1-359	NM_031464	exon3	c.C362T	p.P121L	CTCAGCGGCCGCT	.	89	5	70	0	G|0.708;A|0.292	3	3	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	IRF2BPL-90	NM_024496	exon1	c.369_374del	p.123_125del	TGTTGTTGCTGCT	.	26	10	14	0	CTG|1.000;|0.000	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77942316	77942316	+	Silent	SNP	G	G	A	rs3742732	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ISM2-91	NM_199296	exon7	c.C1338T	p.D446D	GTGCTCGTCCTGT	.	17	15	5	0	G|0.930;A|0.070	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77965094	77965094	+	Silent	SNP	G	G	A	rs12431905	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ISM2-91	NM_199296	exon1	c.C43T	p.L15L	GCAGCAGCACGCA	.	9	9	0	0	G|0.934;A|0.066	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	5	5	0	0	T|0.603;C|0.397	0	0	0	0	0
JAG2	3714	hgsc.bcm.edu	37	14	105634121	105634121	+	Silent	SNP	G	G	A	rs113186535		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	JAG2-846	NM_145159	exon2	c.C390T	p.V130V	GATGACGACGAGG	.	8	8	1	0	.	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369882	65369882	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001101362	exon1	c.C729G	p.S243R	CCCCAGCCCGCAC	.	8	8	1	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	70	11	32	0	.	11	11	0	0	0
TPSAB1	7177	hgsc.bcm.edu;broad.mit.edu	37	16	1292154	1292169	+	Frame_Shift_Del	DEL	CTGTGCCCAGCCCAAC	CTGTGCCCAGCCCAAC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CTGTGCCCAGCCCAAC	CTGTGCCCAGCCCAAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TPSAB1-22	NM_003294	exon6	c.741_756del	p.247_252del	CGAGGGCTGTGCC	.	678	11	309	0	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	20	7	0	0	G|0.570;T|0.430	0	0	0	0	0
LOC100132247	0	broad.mit.edu	37	16	22545360	22545360	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001135865	exon7	c.C1056T	p.P352P	TCCACCCTCAGCT	.	28	7	12	0	.	92	92	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	GGA2-91	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	12	12	0	0	G|0.500;C|0.500	0	0	0	0	0
HAS3	3038	broad.mit.edu;bcgsc.ca	37	16	69148594	69148594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HAS3-90	NM_005329	exon4	c.C1087T	p.R363W	TACTTCCGGGAGT	.	220	8	97	1	.	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	17	9	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	25	10	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	26	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	20	11	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	17	11	0	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	288	13	352	17	.	42	6	36	0	0
KRTAP2-3	730755	hgsc.bcm.edu	37	17	39216019	39216019	+	Missense_Mutation	SNP	G	G	A	rs75503525		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001165252	exon1	c.C284T	p.A95V	GTGGTGGCCCAGC	.	17	17	2	0	A|1.000;|0.000	0	0	0	0	0
TXNDC2	84203	ucsc.edu	37	18	9887448	9887448	+	Silent	SNP	C	C	T	rs34819368		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TXNDC2-92	NM_001098529	exon2	c.C972T	p.P324P	CCAGCCCAAGGAG	.	105	22	135	8	.	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	5	5	3	0	C|0.780;G|0.220	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1467684	1467684	+	Silent	SNP	A	A	C	rs265273	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	APC2-290	NM_005883	exon15	c.A4384C	p.R1462R	AAGAACAGAGCAG	.	4	4	0	0	A|0.030;C|0.970	0	0	0	0	0
PLIN3	10226	bcgsc.ca	37	19	4852137	4852137	+	Silent	SNP	C	C	T	rs1055919	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PLIN3-90	NM_001164189	exon5	c.G525A	p.S175S	CATGACCGATTGG	.	72	4	59	0	C|0.557;T|0.443	170	170	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399709	8399709	+	Silent	SNP	C	C	A	rs890852		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	KANK3-90	NM_198471	exon3	c.G1002T	p.V334V	CGCCTCCACGGTC	.	5	5	0	0	T|0.129;G|0.871	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	15	15	3	0	C|0.734;A|0.266	14	0	14	0	0
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17985536	17985536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SLC5A5-93	NM_000453	exon4	c.C539T	p.A180V	ACACGGCTGTGGT	.	85	72	91	0	.	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183316	33183316	+	Silent	SNP	A	A	G	rs8109823		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	NUDT19-22	NM_001105570	exon1	c.A450G	p.P150P	AGGCCCAGCACCC	.	5	5	0	0	A|0.805;G|0.195	0	0	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	rs150792548	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZNF285-94	NM_152354	exon4	c.C1397G	p.A466G	CTATACGCAAAAT	.	184	26	153	1	A|0.000;C|0.002;G|0.998	1	1	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZNF285-94	NM_152354	exon4	c.C1364A	p.P455Q	TTGTATGGTTTCT	.	182	37	147	4	.	1	1	0	0	0
GPR4	2828	broad.mit.edu	37	19	46094763	46094763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	GPR4-92	NM_005282	exon2	c.A362C	p.H121P	AGTGGGTGGGCCA	.	97	34	52	14	.	1	1	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HRC-91	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	59	10	57	0	.	1	1	0	0	0
DKKL1	27120	bcgsc.ca	37	19	49869051	49869051	+	Missense_Mutation	SNP	T	T	G	rs2303759	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	DKKL1-658	NM_014419	exon4	c.T326G	p.M109R	CACAGATGACCGA	.	156	7	125	0	T|0.710;G|0.290	0	0	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51607507	51607507	+	Missense_Mutation	SNP	G	G	A	rs17855403		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	CTU1-68	NM_145232	exon2	c.C320T	p.A107V	CAGCGCGCCGCCT	.	4	4	0	0	G|0.838;A|0.162	5	0	5	0	0
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249666	52249666	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FPR1-524	NM_001193306	exon3	c.C582T	p.A194A	GGCAACGGCCACA	.	127	115	116	1	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	11	11	0	0	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	191	72	132	1	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	155	51	122	0	.	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	4	4	0	0	C|0.719;T|0.281	2	0	2	0	0
AAK1	22848	broad.mit.edu	37	2	69746326	69746326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	AAK1-333	NM_014911	exon12	c.A1257C	p.K419N	TTGGGGTTTTGGT	.	48	9	39	3	.	7	6	1	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	4	4	0	0	T|0.765;C|0.235	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125262113	125262113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	CNTNAP5-524	NM_130773	exon8	c.G1304A	p.R435H	CAGAACGCGTAGC	.	132	22	115	1	.	0	0	0	0	0
SGOL2	151246	hgsc.bcm.edu;bcgsc.ca	37	2	201437310	201437310	+	Silent	SNP	G	G	T	rs202134341	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SGOL2-94	NM_001160046	exon7	c.G2241T	p.T747T	TTTAACGCAAAAA	.	63	5	122	0	G|0.999;A|0.000	2	2	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	227	4	168	0	.	514	514	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	220	4	176	0	.	448	448	0	0	0
LOC643387	0	broad.mit.edu	37	2	239141221	239141221	+	RNA	SNP	G	G	C	rs11694487	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	.	.	.	.	AATCAGGGTGGAT	.	85	3	76	1	G|0.782;C|0.218	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	10	10	0	0	A|0.165;G|0.835	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	7	7	0	0	G|0.122;C|0.878	0	0	0	0	0
SNRPB2	6629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16712857	16712857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SNRPB2-153	NM_003092	exon3	c.T113C	p.V38A	ATGTGGTGGACAT	.	245	105	159	0	.	56	29	27	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	.	.	.	.	TCTCCTGCTTAGA	.	85	5	64	1	G|0.994;C|0.006	0	0	0	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49510967	49510967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADNP-92	NM_015339	exon5	c.A284G	p.N95S	TGGACATTGCGGA	.	176	80	102	0	.	10	3	7	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	rs874101	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SCARF2-341	NM_153334	exon11	c.C2510G	p.A837G	TCAGGCGCGGGCA	.	5	5	0	0	G|0.531;C|0.469	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	13	12	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	15	14	0	0	G|0.826;C|0.174	0	0	0	0	0
POM121L4P	266697	bcgsc.ca	37	22	21044663	21044663	+	RNA	SNP	G	G	C	rs10427829	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	.	.	.	.	GAGCTCGTGCACC	.	10	9	36	2	G|0.498;C|0.502	0	0	0	0	0
TMPRSS6	164656	bcgsc.ca	37	22	37480797	37480797	+	Silent	SNP	C	C	T	rs2111833	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TMPRSS6-292	NM_153609	exon9	c.G1083A	p.S361S	TTGGGGCGAGTAG	.	51	4	44	0	C|0.669;T|0.331	0	0	0	0	0
ATR	545	bcgsc.ca	37	3	142222284	142222284	+	Silent	SNP	A	A	G	rs2227931	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ATR-1139	NM_001184	exon30	c.T5208C	p.Y1736Y	ACCATGATAATGA	.	146	5	252	0	T|0.254;G|0.218	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161115	151161115	+	Missense_Mutation	SNP	C	C	T	rs145507750		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	IGSF10-102	NM_178822	exon5	c.G5620A	p.V1874I	AGTAAACGCTGGG	.	69	57	63	0	C|0.999;T|0.001	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TNK2-957	NM_001010938	exon13	c.C1953T	p.F651F	CTCACCGAAGTCG	.	12	11	0	0	G|0.936;A|0.064	0	0	0	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	104	27	32	6	.	0	0	0	0	0
GABRA2	2555	broad.mit.edu;bcgsc.ca	37	4	46252483	46252483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	GABRA2-94	NM_000807	exon10	c.C1198A	p.P400T	TTTCTGGCTTCTT	.	152	10	204	1	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	9	9	0	0	G|0.025;C|0.975	0	0	0	0	0
UGT2B17	7367	ucsc.edu;bcgsc.ca	37	4	69433714	69433714	+	Silent	SNP	C	C	T	rs34664906		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	UGT2B17-91	NM_001077	exon1	c.G489A	p.E163E	AAGTAGCTCAGCC	.	22	6	183	1	C|0.693;T|0.307	0	0	0	0	0
EREG	2069	bcgsc.ca	37	4	75248434	75248434	+	Silent	SNP	A	A	G	rs2367707	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EREG-586	NM_001432	exon4	c.A351G	p.E117E	CAAAGAATATGTG	.	140	5	162	0	A|0.223;G|0.777	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79351450	79351450	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FRAS1-68	NM_001166133	exon37	c.T4848C	p.L1616L	AGGACTTCAGGTG	.	71	58	87	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537114	88537114	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	DSPP-90	NM_014208	exon5	c.C3300T	p.S1100S	TAGCAGCGACAGC	.	108	38	67	5	.	0	0	0	0	0
PRDM5	11107	bcgsc.ca	37	4	121738049	121738049	+	Silent	SNP	T	T	C	rs343192	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PRDM5-91	NM_018699	exon6	c.A681G	p.L227L	CTCCTTTAGACTG	.	206	6	246	0	T|0.707;C|0.293	1	1	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	26	17	3	0	T|0.735;G|0.265	0	0	0	0	0
PIK3R1	5295	bcgsc.ca	37	5	67588148	67588148	+	Missense_Mutation	SNP	G	G	A	rs3730089	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PIK3R1-4332	NM_181523	exon8	c.G978A	p.M326I	CAATATGTCCTTA	.	76	5	89	0	G|0.780;A|0.220	14	14	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	22	12	4	0	T|0.632;C|0.368	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	7	7	0	0	A|0.006;G|0.994	5	0	5	0	0
OR2H2	7932	bcgsc.ca	37	6	29555778	29555778	+	Silent	SNP	A	A	G	rs2235698	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OR2H2-22	NM_007160	exon1	c.A57G	p.P19P	ACACCCAGGGCTG	.	136	7	147	0	A|0.764;G|0.236	0	0	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29911925	29911925	+	Missense_Mutation	SNP	C	C	T	rs77235917		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HLA-A-92	NM_001242758	exon4	c.C646T	p.H216Y	ACCCACCACCCCA	.	33	4	70	0	.	9	9	0	0	0
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TNXB-90	NM_019105	exon3	c.2116_2117del	p.706_706del	CCCTCTACACACA	.	409	8	240	0	.	0	0	0	0	0
HLA-DQA1	3117	bcgsc.ca	37	6	32609126	32609126	+	Missense_Mutation	SNP	T	T	C	rs1071630	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HLA-DQA1-90	NM_002122	exon2	c.T122C	p.F41S	ACCAGTTTTACGG	.	35	16	164	3	T|0.423;C|0.577	3	3	0	0	0
NFKBIE	4794	hgsc.bcm.edu	37	6	44233216	44233216	+	Missense_Mutation	SNP	G	G	C	rs28362857	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	NFKBIE-135	NM_004556	exon1	c.C285G	p.H95Q	CGGGCTGTGGGGC	.	10	10	0	0	G|0.059;C|0.941	0	0	0	0	0
ENPP5	59084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	46129455	46129455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ENPP5-90	NM_021572	exon4	c.A1042T	p.M348L	GATGCATATCTGC	.	24	22	38	0	.	14	0	14	0	0
STXBP5	134957	broad.mit.edu;bcgsc.ca	37	6	147525733	147525733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	STXBP5-90	NM_139244	exon1	c.A65T	p.Q22L	CGTCGCAGCAGCA	.	222	136	207	2	.	1	0	1	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	6	5	1	0	G|0.796;C|0.204	0	0	0	0	0
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	EIF3B-68	NM_001037283	exon1	c.C435T	p.N145N	GGAGAACGGCGAC	.	4	4	0	0	C|0.787;T|0.213	36	0	36	0	0
VWDE	221806	bcgsc.ca	37	7	12433347	12433347	+	Missense_Mutation	SNP	C	C	T	rs17165995	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	VWDE-68	NM_001135924	exon2	c.G116A	p.R39H	TCAAAACGGACAC	.	110	6	134	2	C|0.794;T|0.206	1	1	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43483926	43483943	+	In_Frame_Del	DEL	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HECW1-669	NM_015052	exon11	c.1155_1172del	p.385_391del	GGCACCAGAGTCC	.	89	55	147	0	.	0	0	0	0	0
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12957772	12957772	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	DLC1-657	NM_182643	exon9	c.T2074C	p.L692L	TGATCAACCCCAG	.	179	81	70	0	.	9	6	3	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98656966	98656966	+	Missense_Mutation	SNP	G	G	T	rs17854373	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	MTDH-91	NM_178812	exon1	c.G232T	p.A78S	GCCGGCGCCCGCA	.	30	18	0	0	G|0.973;T|0.027	7	4	3	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	32	31	0	0	.	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139729081	139729081	+	Missense_Mutation	SNP	C	C	T	rs144653941		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	COL22A1-103	NM_152888	exon28	c.G2387A	p.R796Q	CCAGGTCGGCCTG	.	76	31	55	0	C|1.000;T|0.000	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	27	9	2	0	A|0.118;G|0.882	2	0	2	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	5	5	0	0	A|0.096;C|0.904	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	14	14	0	0	G|0.992;C|0.006	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	18	17	0	0	G|0.572;C|0.428	3	0	3	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	9	7	0	0	A|0.235;G|0.765	2	1	1	0	0
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	282	9	108	0	.	0	0	0	0	0
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993856	134993856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SAGE1-133	NM_018666	exon18	c.G2265A	p.M755I	TTGTATGCCACCC	.	197	177	141	0	.	0	0	0	0	0
ATP11C	286410	ucsc.edu;bcgsc.ca	37	X	138864822	138864822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ATP11C-198	NM_001010986	exon18	c.C1845A	p.N615K	CTGTCTGTTAATT	.	40	4	34	0	.	4	4	0	0	0
GABRE	2564	bcgsc.ca	37	X	151138179	151138179	+	Missense_Mutation	SNP	A	A	C	rs1139916	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	GABRE-132	NM_004961	exon3	c.T304G	p.S102A	TGACGGAGATCTC	.	311	13	147	2	A|0.369;C|0.631	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	151	32	64	2	.	0	0	0	0	0
POLG	5428	hgsc.bcm.edu;broad.mit.edu	37	15	89876827	89876828	+	In_Frame_Ins	INS	-	-	TGCTGC	rs41550117	bycluster;alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	POLG-228	NM_001126131	exon2	c.159_160insGCAGCA	p.Q53delinsQQQ	CTGCTGTTGCTGC	.	41	12	10	0	.	0	0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77356310	77356311	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADAMTS18-1036	NM_199355	exon14	c.2086_2087insT	p.A696fs	ACATTGCAAAAAA	.	234	7	131	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ATXN1-93	NM_001128164	exon7	c.627_628insGCA	p.H209delinsQH	ATGCTGATGCTGC	.	36	22	26	0	.	0	0	0	0	0
MEPCE	56257	broad.mit.edu	37	7	100028067	100028068	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	MEPCE-91	NM_019606	exon1	c.426_427insG	p.P142fs	GCCACCTGGGGGG	.	6	2	6	0	.	0	0	0	0	0