Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM16	63976	hgsc.bcm.edu	37	1	3329263	3329263	+	Silent	SNP	C	C	T	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRDM16-660	NM_022114	exon9	c.C2502T	p.G834G	GCTGGGCGCCGGC	.	13	9	1	0	C|0.969;T|0.031	0	0	0	0	0
MAD2L2	10459	hgsc.bcm.edu;bcgsc.ca	37	1	11737631	11737631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MAD2L2-659	NM_006341	exon4	c.C200A	p.T67K	TGCAGCGTGTCCT	.	60	4	52	0	.	78	78	0	0	0
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29424397	29424397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EPB41-91	NM_001166005	exon17	c.G2263A	p.V755I	AAAGACGTCCCTA	.	126	67	194	0	.	16	5	11	0	0
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	60299091	60299091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HOOK1-154	NM_015888	exon5	c.G288C	p.Q96H	GCAGCAGATTTCA	.	81	6	93	0	.	3	3	0	0	0
WLS	79971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68624824	68624824	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	WLS-90	NM_024911	exon3	c.C486T	p.C162C	GAAGGTGCATTTG	.	124	58	176	0	.	145	56	89	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152323852	152323852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FLG2-151	NM_001014342	exon3	c.G6410C	p.G2137A	GCAGATCCTGACT	.	405	101	478	0	.	0	0	0	0	0
IER5	51278	hgsc.bcm.edu	37	1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	rs3747955		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	10	8	0	0	G|0.568;A|0.432	8	3	5	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186147583	186147583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HMCN1-113	NM_031935	exon104	c.G15979C	p.A5327P	CCTTGTGCACATC	.	190	95	187	0	.	1	1	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	23	23	0	0	C|0.242;T|0.758	0	0	0	0	0
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203452909	203452909	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRELP-516	NM_201348	exon2	c.C597T	p.L199L	GCTGCTCCTGGAT	.	89	41	89	0	.	2	2	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	14	9	0	0	C|0.643;T|0.357	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	8	4	2	0	T|0.623;G|0.377	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	78	39	234	5	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	81	27	257	4	C|1.000;|0.000	0	0	0	0	0
OR51B2	79345	bcgsc.ca	37	11	5344681	5344681	+	Missense_Mutation	SNP	G	G	A	rs11036815	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	OR51B2-71	NM_033180	exon1	c.C847T	p.P283S	TTAAAGGAGGAAA	.	136	8	289	1	G|0.719;A|0.281	0	0	0	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64116890	64116890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CCDC88B-94	NM_032251	exon15	c.C2704A	p.R902S	CTCGAGCGCCAGG	.	72	4	60	0	.	4	4	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	7	5	0	0	C|0.921;T|0.079	0	0	0	0	0
ADRBK1	156	broad.mit.edu;ucsc.edu	37	11	67046987	67046987	+	Silent	SNP	G	G	A	rs112675049	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ADRBK1-521	NM_001619	exon4	c.G363A	p.S121S	CTGCTCGCATGTG	.	84	9	81	1	G|1.000;A|0.000	0	0	0	0	0
FGF19	9965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	69514323	69514323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FGF19-658	NM_005117	exon3	c.T358G	p.C120G	AAGCACAGTCTTC	.	114	11	103	0	.	0	0	0	0	0
ARHGEF17	9828	hgsc.bcm.edu	37	11	73020058	73020058	+	Silent	SNP	C	C	T	rs12272360	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARHGEF17-227	NM_014786	exon1	c.C375T	p.S125S	GCCCAGCGTCACC	.	5	5	2	0	C|0.906;T|0.094	1	0	1	0	0
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	84245704	84245704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DLG2-96	NM_001142699	exon7	c.G428T	p.G143V	TCTGGGCCTCTTA	.	210	38	192	0	.	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118368752	118368752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MLL-1255	NM_001197104	exon21	c.G5766C	p.K1922N	ACTAAAGAATGTG	.	162	33	153	0	.	1	1	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6426579	6426579	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon8	c.G867A	p.Q289Q	CGTGCAGGTGGGA	.	118	30	104	1	.	0	0	0	0	0
PLEKHG6	55200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6426809	6426809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon9	c.G964A	p.A322T	CTCCATGCTGTGC	.	94	19	61	0	.	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427086	6427086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1081A	p.E361K	GAGCAAGAGAGCT	.	358	85	269	2	.	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427101	6427101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1096A	p.A366T	GCGGCTGCAGCAC	.	343	84	279	2	.	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427146	6427146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1141A	p.D381N	CCCAGTGATGAGG	.	283	68	266	1	.	0	0	0	0	0
SCNN1A	6337	ucsc.edu;bcgsc.ca	37	12	6464989	6464989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SCNN1A-90	NM_001159576	exon4	c.G1110C	p.K370N	GTTGTTCTTGTCA	.	417	125	308	2	.	10	9	1	0	0
SSPN	8082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26377283	26377283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SSPN-90	NM_005086	exon2	c.G337A	p.E113K	GTTGACGAACGGA	.	350	62	196	1	.	5	2	3	0	0
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32135056	32135056	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_018169	exon4	c.A1167G	p.A389A	TGTTGCAAAAGAA	.	255	111	128	0	.	3	3	0	0	0
APOF	319	broad.mit.edu	37	12	56755866	56755866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001638	exon2	c.C124G	p.Q42E	TTGTCTGCTTTCC	.	553	13	220	0	.	0	0	0	0	0
PTPRQ	374462	broad.mit.edu	37	12	80936082	80936082	+	Silent	SNP	C	C	T	rs11114503	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001145026	exon19	c.C3144T	p.A1048A	TGCTGCCGCAAGA	.	126	6	135	2	C|0.585;T|0.415	0	0	0	0	0
SLC5A8	160728	broad.mit.edu	37	12	101584302	101584302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC5A8-90	NM_145913	exon6	c.C777T	p.V259V	TTGGTTGACACCG	.	209	6	184	0	.	0	0	0	0	0
CHPT1	56994	broad.mit.edu	37	12	102091784	102091784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CHPT1-90	NM_020244	exon1	c.T145G	p.Y49D	CAGCTCTACTGGA	.	17	4	24	0	.	34	23	11	0	0
CORO1C	23603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109055859	109055862	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CORO1C-228	NM_014325	exon4	c.391_394del	p.131_132del	CGACTCTCTTTGA	.	155	32	183	0	.	0	0	0	0	0
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123741386	123741386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C12orf65-90	NM_001194995	exon3	c.G309T	p.Q103H	TGATCAGAACAGA	.	206	30	134	0	.	44	35	9	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	12	6	0	0	C|0.873;T|0.127	21	2	19	0	0
ATP7B	540	bcgsc.ca	37	13	52544805	52544805	+	Missense_Mutation	SNP	C	C	G	rs1801244	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ATP7B-92	NM_000053	exon3	c.G1366C	p.V456L	CCTGCACAGATGT	.	102	7	117	0	C|0.518;G|0.482	0	0	0	0	0
CEP128	145508	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81259323	81259323	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CEP128-91	NM_152446	exon13	c.G1341T	p.L447L	GCGAGTCAGCTCT	.	157	29	203	1	.	0	0	0	0	0
DYNC1H1	1778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102463457	102463457	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DYNC1H1-98	NM_001376	exon16	c.A3650T	p.E1217V	AGGGAGAGTGGGG	.	214	55	280	2	.	10	10	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	13	13	0	0	T|0.603;C|0.397	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu	37	14	105416541	105416541	+	Missense_Mutation	SNP	C	C	A	rs201377031	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AHNAK2-47	NM_138420	exon7	c.G5247T	p.L1749F	CATCTTCAAACTG	.	113	6	82	0	.	0	0	0	0	0
CHRFAM7A	89832	broad.mit.edu;bcgsc.ca	37	15	30659708	30659708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CHRFAM7A-45	NM_139320	exon9	c.G633C	p.M211I	GATGATCATGGTG	.	2136	79	1656	0	.	4	4	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369947	65369947	+	Missense_Mutation	SNP	G	G	A	rs146917406		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001101362	exon1	c.G794A	p.G265D	TCGGCGGCGAATT	.	27	11	2	0	G|0.992;A|0.008	0	0	0	0	0
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75586797	75586797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001145224	exon18	c.C2063A	p.P688H	TGTCTCCTGTCAT	.	327	58	206	0	.	0	0	0	0	0
RHBDF1	64285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	108431	108431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RHBDF1-92	NM_022450	exon18	c.C2476T	p.P826S	GGACAGGATAGAC	.	154	36	289	1	.	36	22	14	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	7	7	0	0	G|0.570;T|0.430	0	0	0	0	0
ERI2	112479	broad.mit.edu	37	16	20810067	20810067	+	Missense_Mutation	SNP	T	T	C	rs3213646	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ERI2-153	NM_001142725	exon9	c.A1055G	p.Y352C	TGCATATAGATAG	.	76	3	77	0	T|0.674;C|0.326	4	4	0	0	0
ABCC11	85320	broad.mit.edu;bcgsc.ca	37	16	48209224	48209224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ABCC11-95	NM_033151	exon25	c.C3643T	p.R1215W	TGGACCGCAAGTC	.	169	7	250	0	.	0	0	0	0	0
CNOT1	23019	bcgsc.ca	37	16	58575489	58575489	+	Silent	SNP	G	G	A	rs11540994	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CNOT1-95	NM_016284	exon34	c.C4716T	p.Y1572Y	CTCTTCGTAAACA	.	135	6	196	0	G|0.583;A|0.417	43	43	0	0	0
CALB2	794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71416647	71416647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CALB2-90	NM_007088	exon5	c.G368C	p.R123T	CAGACAGGAGTGG	.	216	81	318	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	19	4	2	0	G|0.858;T|0.142	3	3	0	0	0
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	970425	970425	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ABR-91	NM_021962	exon10	c.A1074G	p.P358P	GGGGGATGGAAAC	.	19	8	47	0	.	0	0	0	0	0
ARRB2	409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4619770	4619770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARRB2-522	NM_001257329	exon5	c.C224T	p.S75F	GCTTGTCCTTCCG	.	81	38	99	0	.	7	7	0	0	0
SLC13A5	284111	bcgsc.ca	37	17	6594223	6594223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC13A5-90	NM_001143838	exon10	c.G1312A	p.E438K	AGGGCTCCATCTG	.	100	29	139	0	.	0	0	0	0	0
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49354664	49354664	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	UTP18-90	NM_016001	exon7	c.A1011T	p.R337S	AGTGAGAGGTAAG	.	81	16	75	0	.	3	0	3	0	0
TRIM37	4591	broad.mit.edu	37	17	57139965	57139965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TRIM37-660	NM_015294	exon11	c.A905G	p.Q302R	GAAACTTGAAGAG	.	121	3	114	0	.	14	14	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66519041	66519041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRKAR1A-1141	NM_001276290	exon2	c.G322T	p.E108X	ACGGAGGAAGATG	.	58	36	72	0	.	62	59	3	0	0
POTEC	388468	bcgsc.ca	37	18	14542654	14542654	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	POTEC-3	NM_001137671	exon1	c.G492T	p.T164T	CATGTCCGTGTCC	.	207	17	613	1	.	0	0	0	0	0
POTEC	388468	bcgsc.ca	37	18	14542693	14542693	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	POTEC-3	NM_001137671	exon1	c.G453A	p.K151K	GGGGACCTTACCC	.	259	56	702	6	.	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28672247	28672247	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSC2-517	NM_024422	exon3	c.C171A	p.C57X	TGTAAAGCACTCT	.	136	61	122	0	.	0	0	0	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DOHH-90	NM_001145165	exon4	c.C531G	p.R177R	CATGGCGCGGTAT	.	11	5	0	0	G|0.979;C|0.021	17	7	10	0	0
CREB3L3	84699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171861	4171861	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CREB3L3-92	NM_032607	exon10	c.T1281A	p.N427K	GAGGAATGCAACA	.	187	26	144	1	.	0	0	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	7	4	0	0	G|0.892;A|0.108	2	0	2	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224474	10224474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PPAN-P2RY11-24	NM_001198690	exon13	c.A1507C	p.T503P	CATGGCACCCCGC	.	142	15	129	8	.	17	16	1	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	12	12	0	0	C|0.617;T|0.383	28	0	28	0	0
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40909675	40909676	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRX-92	NM_181882	exon5	c.121_122del	p.41_41del	AAGATTCCCTCTT	.	114	42	140	0	.	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	9	4	0	0	C|0.254;G|0.746	0	0	0	0	0
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48601409	48601409	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLA2G4C-92	NM_001159322	exon6	c.G585A	p.E195E	TCTTGCCTCCTGC	.	155	43	155	0	.	0	0	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	71	6	82	0	A|0.998;G|0.002	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50100554	50100554	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRR12-70	NM_020719	exon4	c.G2962C	p.D988H	GCTTATGATCCCT	.	24	6	1	0	.	9	9	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	75	24	34	1	.	41	39	2	0	0
TRAPPC12	51112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3392328	3392328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_016030	exon2	c.C934T	p.P312S	TGGCTTCCCGGCG	.	357	122	104	1	.	33	18	15	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21226106	21226106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	APOB-175	NM_000384	exon29	c.C12188A	p.A4063D	CCAGAAGCTGCCT	.	91	16	79	0	.	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36764534	36764534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CRIM1-118	NM_016441	exon14	c.G2468C	p.G823A	TCAGTGGGAAGGC	.	95	50	147	0	.	13	11	2	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84908502	84908502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DNAH6-69	NM_001370	exon42	c.A6766G	p.S2256G	TTCCTGAGTGACT	.	105	31	95	0	.	0	0	0	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133540078	133540078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_207363	exon14	c.A4306G	p.T1436A	CAAAAGTGCTTGG	.	94	10	92	0	.	0	0	0	0	0
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144764748	144764748	+	Splice_Site	SNP	C	C	A	rs199607709	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GTDC1-91	NM_001164629	exon8	c.875+1G>T	.	GACTTACCACCTG	.	130	61	122	1	.	0	0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168098406	168098406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	XIRP2-104	NM_001199143	exon9	c.G1261T	p.A421S	ACCCCAGCCAAGC	.	51	4	47	0	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241728660	241728660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIF1A-91	NM_001244008	exon3	c.A176T	p.H59L	GAGGTGTGCGACC	.	129	28	97	0	.	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	17	6	4	0	T|0.877;C|0.123	6	6	0	0	0
RNF24	11237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3954983	3954983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RNF24-226	NM_001134338	exon2	c.G52T	p.G18W	ACCCCCCTAAGAC	.	49	10	56	0	.	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	.	.	.	.	TTCTCCTGCTTAG	.	63	3	84	1	.	0	0	0	0	0
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30388862	30388862	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TPX2-290	NM_012112	exon18	c.C2223T	p.F741F	CAAATTCTCCACT	.	186	45	225	0	.	43	32	11	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	6	4	2	0	C|0.615;A|0.385	19	7	12	0	0
PABPC1L	80336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43550237	43550237	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PABPC1L-47	NM_001124756	exon6	c.C741T	p.A247A	CCAGGCCGTGGTC	.	143	55	157	0	.	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	LAMA5-93	NM_005560	exon50	c.T6668G	p.L2223R	GGGCCCAGGGGGC	.	44	16	34	1	.	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001037335	exon9	c.T5462G	p.L1821R	ACGGCCAGGGTGT	.	13	8	4	0	A|0.739;C|0.261	8	4	4	0	0
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62839773	62839773	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MYT1-704	NM_004535	exon7	c.G1224T	p.L408L	CCAGCTGGGCCTG	.	165	39	204	0	.	0	0	0	0	0
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31768658	31768658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KRTAP13-1-91	NM_181599	exon1	c.C254A	p.T85N	CCAGAACCTCCTT	.	129	32	192	0	.	0	0	0	0	0
SON	6651	ucsc.edu	37	21	34923319	34923319	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SON-97	NM_032195	exon3	c.A1782G	p.L594L	GGCACTAGAGTTG	.	83	1	88	0	.	12	12	0	0	0
DNMT3L	29947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45666395	45666395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DNMT3L-228	NM_013369	exon12	c.A1049G	p.N350S	TGCTTGTTCTGGG	.	135	35	116	0	.	0	0	0	0	0
TTC28	23331	broad.mit.edu	37	22	28378384	28378384	+	Missense_Mutation	SNP	G	G	C	rs41278845	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001145418	exon23	c.C7271G	p.A2424G	GGTGGAGCTCCGT	.	68	3	81	0	G|0.948;C|0.052	3	3	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	CTGAGAAGGCCAA	.	118	45	174	0	.	0	0	0	0	0
PLA2G3	50487	bcgsc.ca	37	22	31532960	31532960	+	Missense_Mutation	SNP	C	C	T	rs2232183	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLA2G3-226	NM_015715	exon5	c.G1133A	p.R378Q	ATTTCCCGGGGCC	.	177	6	165	1	C|0.845;T|0.155	0	0	0	0	0
A4GALT	53947	ucsc.edu;bcgsc.ca	37	22	43089055	43089055	+	Silent	SNP	G	G	C	rs6002904	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	A4GALT-90	NM_017436	exon3	c.C903G	p.P301P	CTCCTCGGGGTTG	.	37	4	85	0	G|0.333;C|0.667	4	4	0	0	0
ARFGAP3	26286	ucsc.edu;bcgsc.ca	37	22	43203137	43203137	+	Silent	SNP	C	C	T	rs738535	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARFGAP3-153	NM_014570	exon14	c.G1353A	p.S451S	ACTTGCCGACAGC	.	55	5	114	1	C|0.641;T|0.359	70	70	0	0	0
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44893294	44893294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	LDOC1L-69	NM_032287	exon2	c.C143T	p.A48V	TTCTCCGCCCGCA	.	35	31	85	0	.	6	0	5	1	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155	81	246	0	.	362	127	235	0	0
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42577654	42577654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	VIPR1-91	NM_004624	exon13	c.C1255T	p.R419W	AAATACCGGCACC	.	241	74	174	0	.	0	0	0	0	0
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53269001	53269001	+	Silent	SNP	G	G	A	rs140465934	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TKT-92	NM_001258028	exon6	c.C651T	p.F217F	ATACCCGAAGGCC	.	64	28	90	0	G|1.000;A|0.000	0	0	0	0	0
RBP1	5947	bcgsc.ca	37	3	139258411	139258411	+	Silent	SNP	G	G	A	rs11549984		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RBP1-514	NM_002899	exon1	c.C150T	p.R50R	AAGCGGGCGGGAC	.	190	7	200	3	G|0.910;A|0.090	108	108	0	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142286929	142286929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ATR-1139	NM_001184	exon2	c.C127T	p.R43W	GTATCCGGTCAAT	.	130	68	219	0	.	2	1	1	0	0
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185212464	185212464	+	Missense_Mutation	SNP	G	G	A	rs151156113		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TMEM41A-90	NM_080652	exon4	c.C521T	p.S174L	GGGGCCGAGAGGT	.	90	6	136	0	G|0.999;A|0.000	85	77	8	0	0
MUC4	4585	bcgsc.ca	37	3	195509630	195509630	+	Missense_Mutation	SNP	C	C	G	rs61200084		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MUC4-90	NM_018406	exon2	c.G8821C	p.D2941H	TGGTGTCACCTGT	.	195	30	299	12	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195509641	195509641	+	Missense_Mutation	SNP	A	A	G	rs28414759		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MUC4-90	NM_018406	exon2	c.T8810C	p.V2937A	GTGGATACTGAGG	.	171	40	266	28	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195513154	195513154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MUC4-90	NM_018406	exon2	c.C5297A	p.T1766N	GAGGAAGTGTCGG	.	699	65	824	27	.	0	0	0	0	0
PROM1	8842	hgsc.bcm.edu;broad.mit.edu	37	4	15982079	15982079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PROM1-207	NM_006017	exon23	c.T2455G	p.Y819D	GACGATAGTACTT	.	74	4	78	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	6	6	0	0	G|0.025;C|0.975	0	0	0	0	0
AMTN	401138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71394907	71394907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AMTN-153	NM_212557	exon7	c.A337G	p.I113V	GGCACTATCCTAA	.	581	363	318	2	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSPP-90	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT	.	839	109	472	5	.	0	0	0	0	0
MEPE	56955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88767172	88767172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MEPE-93	NM_020203	exon4	c.A1152T	p.K384N	AAGAAAAGAAGGC	.	614	80	290	1	.	0	0	0	0	0
CYP2U1	113612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	108853207	108853216	+	Frame_Shift_Del	DEL	GCGCGAGGCG	GCGCGAGGCG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	GCGCGAGGCG	GCGCGAGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CYP2U1-90	NM_183075	exon1	c.408_417del	p.136_139del	CAGCGTGCGCGAG	.	161	29	202	0	.	0	0	0	0	0
FAM160A1	729830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152498948	152498948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001109977	exon5	c.C452T	p.S151L	CTTGTTCAGGAAC	.	124	44	193	1	.	0	0	0	0	0
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156618116	156618116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GUCY1A3-93	NM_001130687	exon3	c.G97A	p.A33T	GAGGAGGCAGCAG	.	129	33	210	0	.	3	3	0	0	0
STOX2	56977	bcgsc.ca	37	4	184931818	184931818	+	Silent	SNP	G	G	A	rs4861597	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	STOX2-22	NM_020225	exon3	c.G1827A	p.T609T	TGAGACGGTGCTC	.	209	8	433	4	G|0.583;A|0.417	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	8	8	0	0	C|0.687;T|0.313	18	0	18	0	0
DAB2	1601	bcgsc.ca	37	5	39376885	39376906	+	Frame_Shift_Del	DEL	CGCGGGCACAGCAGGTGGCTGC	CGCGGGCACAGCAGGTGGCTGC	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CGCGGGCACAGCAGGTGGCTGC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DAB2-227	NM_001343	exon12	c.1983_2004del	p.661_668del	CTTCCGCGCGGGC	.	127	6	97	0	.	0	0	0	0	0
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41143080	41143080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C6-95	NM_001115131	exon18	c.G2652T	p.L884F	TGGGGGCAATAGG	.	243	35	140	0	.	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79028141	79028141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CMYA5-77	NM_153610	exon2	c.G3553A	p.E1185K	GAACAGGAACCCA	.	351	43	182	0	.	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	6	6	0	0	T|0.632;C|0.368	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	13	7	2	0	G|0.546;T|0.454	5	3	2	0	0
E2F3	1871	broad.mit.edu	37	6	20483017	20483017	+	Silent	SNP	G	G	T	rs149378067	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	E2F3-414	NM_001949	exon4	c.G750T	p.G250G	GGATGGGGGCATG	.	105	5	77	0	G|1.000;C|0.000	7	7	0	0	0
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027447	26027447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HIST1H4B-70	NM_003544	exon1	c.G34C	p.G12R	CCTTACCCAAACC	.	117	50	154	0	.	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324003	31324025	+	Frame_Shift_Del	DEL	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HLA-B-90	NM_005514	exon3	c.538_560del	p.180_187del	ACGCACTCGCCCT	.	74	0	126	0	.	0	0	0	0	0
MICA	100507436	broad.mit.edu	37	6	31379115	31379115	+	Missense_Mutation	SNP	G	G	A	rs1131896	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001177519	exon3	c.G592A	p.G198S	GAATCCGGCGTAG	.	90	3	177	0	G|0.689;A|0.311	100	98	1	0	1
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35773835	35773835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	LHFPL5-91	NM_182548	exon1	c.T388G	p.C130G	AAGATCTGTGCAT	.	85	14	90	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920447	51920447	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PKHD1-603	NM_170724	exon19	c.C1774T	p.R592X	GGTGTCGAGGCTG	.	227	73	150	0	.	0	0	0	0	0
RIMS1	22999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73000415	73000415	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RIMS1-144	NM_014989	exon25	c.C3588T	p.H1196H	GGGACACGCAGCC	.	236	25	149	1	.	0	0	0	0	0
TSPYL4	23270	bcgsc.ca	37	6	116574989	116574989	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_021648	exon1	c.T183A	p.G61G	GGATGCACCCCCC	.	49	10	64	0	.	8	8	0	0	0
DSE	29940	bcgsc.ca	37	6	116754523	116754523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSE-91	NM_001080976	exon5	c.G928A	p.A310T	ACTGTGGCTATTG	.	87	14	116	0	.	0	0	0	0	0
DSE	29940	bcgsc.ca	37	6	116754526	116754526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSE-91	NM_001080976	exon5	c.A931T	p.I311F	GTGGCTATTGCGG	.	90	14	119	0	.	0	0	0	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139498189	139498189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HECA-90	NM_016217	exon4	c.G1579A	p.D527N	AACCTGGACTACC	.	105	32	79	0	.	12	7	5	0	0
TULP4	56995	bcgsc.ca	37	6	158870081	158870081	+	Silent	SNP	A	A	G	rs705956	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TULP4-91	NM_020245	exon4	c.A597G	p.R199R	CGGCAGAATGCTG	.	133	5	193	0	A|0.374;G|0.626	0	0	0	0	0
SLC22A3	6581	hgsc.bcm.edu	37	6	160769828	160769828	+	Missense_Mutation	SNP	C	C	G	rs113898574		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC22A3-517	NM_021977	exon1	c.C377G	p.P126R	TTGTGCCGTGCCG	.	8	6	1	0	C|0.500;G|0.500	7	0	7	0	0
SDK1	221935	broad.mit.edu;bcgsc.ca	37	7	4153774	4153774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SDK1-138	NM_152744	exon25	c.G3691T	p.D1231Y	GTCAGTGACCGGC	.	255	10	170	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5353000	5353000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TNRC18-46	NM_001080495	exon27	c.G7522T	p.A2508S	TGCCGGCCGCGGG	.	60	11	7	0	.	9	9	0	0	0
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47408816	47408816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TNS3-94	NM_022748	exon17	c.A1427T	p.D476V	AGAATGTCTGTCT	.	205	38	174	0	.	1	1	0	0	0
PRRT4	401399	hgsc.bcm.edu;mdanderson.org	37	7	127991345	127991345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001114726	exon6	c.T1231C	p.S411P	AGGCAGAGCGTCC	.	28	14	8	0	.	0	0	0	0	0
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142567581	142567581	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EPHB6-1489	NM_004445	exon17	c.T2469C	p.C823C	AAGTTGTTTGCTT	.	120	12	132	0	.	0	0	0	0	0
NOS3	4846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150704089	150704089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	NOS3-1011	NM_000603	exon16	c.C1933G	p.L645V	GGCACCCTCAGGT	.	176	20	133	0	.	0	0	0	0	0
MIR596	693181	bcgsc.ca	37	8	1765425	1765425	+	RNA	SNP	T	T	C	rs61388742	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	.	.	.	.	CCCGGCTCCTCGG	.	22	3	218	1	T|0.922;C|0.078	0	0	0	0	0
MYOM2	9172	ucsc.edu;bcgsc.ca	37	8	2037833	2037833	+	Silent	SNP	G	G	C	rs2294061	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MYOM2-95	NM_003970	exon15	c.G1647C	p.S549S	GTAGTCGGTGGTG	.	18	4	133	0	G|0.783;C|0.217	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	19	10	0	0	G|0.907;A|0.093	0	0	0	0	0
FDFT1	2222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11689040	11689040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FDFT1-90	NM_004462	exon7	c.C893T	p.A298V	CCATTGCCACTTT	.	272	155	176	0	.	1112	337	773	0	2
MBOAT4	619373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	29996184	29996184	+	Missense_Mutation	SNP	C	C	T	rs140611326	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MBOAT4-68	NM_001100916	exon2	c.G208A	p.A70T	CCACAGCGCAGAC	.	338	72	314	0	C|1.000;T|0.000	0	0	0	0	0
PAG1	55824	bcgsc.ca	37	8	81905397	81905397	+	Silent	SNP	A	A	G	rs2016465	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_018440	exon4	c.T66C	p.A22A	GACAGCAGCCAGA	.	80	5	80	0	A|0.513;G|0.487	0	0	0	0	0
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606283	82606283	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC10A5-90	NM_001010893	exon1	c.C925G	p.L309V	AACTCAGAGGTCT	.	39	16	30	0	.	0	0	0	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814462	106814462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZFPM2-139	NM_012082	exon8	c.C2152G	p.L718V	CCTCCACTGAAGA	.	137	67	131	0	.	1	1	0	0	0
PKHD1L1	93035	bcgsc.ca	37	8	110448635	110448635	+	Missense_Mutation	SNP	A	A	G	rs10093885	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PKHD1L1-145	NM_177531	exon30	c.A3574G	p.T1192A	AATGAAACCTGCA	.	87	4	75	0	A|0.801;G|0.199	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	4	4	0	0	C|0.740;T|0.260	4	0	4	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	9	9	0	0	A|0.738;G|0.262	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	4	4	0	0	A|0.096;C|0.904	0	0	0	0	0
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35752652	35752652	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RGP1-23	NM_001080496	exon9	c.C957A	p.S319S	AGTGTCCTTGAAG	.	144	41	150	0	.	0	0	0	0	0
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86920229	86920229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC28A3-94	NM_001199633	exon4	c.G274A	p.G92S	AGAAACCACATAC	.	89	32	106	0	.	0	0	0	0	0
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95233050	95233050	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ASPN-514	NM_001193335	exon3	c.C288A	p.V96V	GGTTGGGACTGAG	.	98	36	85	0	.	8	8	0	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ASPN-514	NM_001193335	exon2	c.G156T	p.E52D	GTTGTCCTCATCA	.	140	4	122	0	.	1	1	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114246951	114246951	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIAA0368-68	NM_001080398	exon1	c.A75G	p.K25K	ATGTTCTTTTCGG	.	64	12	123	0	.	0	0	0	0	0
RNF183	138065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116060043	116060043	+	Missense_Mutation	SNP	G	G	A	rs146147048		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RNF183-90	NM_145051	exon2	c.C422T	p.T141M	ATGGGCGTAGACA	.	171	33	210	0	G|0.999;A|0.000	0	0	0	0	0
CACNA1B	774	broad.mit.edu	37	9	140953592	140953592	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CACNA1B-138	NM_001243812	exon30	c.C4535G	p.S1512C	TCACATCCATGTT	.	303	7	426	0	.	0	0	0	0	0
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1413336	1413336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CSF2RA-42	NM_172247	exon6	c.G762T	p.Q254H	GTACCAGCTGGAC	.	693	303	702	2	.	2	2	0	0	0
DDX53	168400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23018850	23018850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DDX53-228	NM_182699	exon1	c.G676A	p.A226T	AAAGACGCTTTTC	.	340	99	234	1	.	0	0	0	0	0
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106284	53106284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GPR173-130	NM_018969	exon2	c.G481C	p.D161H	GTCTTTGACGTGG	.	247	49	205	0	.	0	0	0	0	0
AR	367	hgsc.bcm.edu	37	X	66765164	66765164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AR-661	NM_000044	exon1	c.A176T	p.Q59L	TGCAGCAGCAGCA	.	72	8	52	0	.	0	0	0	0	0
YIPF6	286451	broad.mit.edu;bcgsc.ca	37	X	67718936	67718936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	YIPF6-130	NM_001195214	exon1	c.G28A	p.D10N	CCAGGAGACCCGG	.	341	10	344	1	.	35	35	0	0	0
LINC00238	440184	hgsc.bcm.edu	37	14	66953308	66953309	+	RNA	INS	-	-	TC	rs10569333		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	.	.	.	.	AAGAGGGTCTCTC	.	92	20	73	0	-|0.500;TC|0.500	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001145051	exon2	c.420_421insGAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	p.R140delinsRERQHEVVMEQLQR	GCAGCGGGAGCGG	.	223	0	197	0	.	0	0	0	0	0
RGS7BP	401190	broad.mit.edu	37	5	63802481	63802482	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RGS7BP-68	NM_001029875	exon1	c.30_31insC	p.K10fs	CAAAAAGCGCCCC	.	185	7	77	0	.	0	0	0	0	0