Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	hgsc.bcm.edu	37	1	877831	877831	+	Missense_Mutation	SNP	T	T	C	rs6672356		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SAMD11-90	NM_152486	exon10	c.T1027C	p.W343R	TTCGCCTGGCAGC	.	7	7	0	0	T|0.004;C|0.996	0	0	0	0	0
FAM132A	388581	bcgsc.ca	37	1	1179800	1179800	+	Silent	SNP	G	G	A	rs115586508	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	FAM132A-68	NM_001014980	exon2	c.C255T	p.G85G	TAAGGCGCCGTCG	.	151	6	116	1	G|0.983;A|0.017	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	15	15	0	0	A|0.047;C|0.953	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12854139	12854139	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PRAMEF1-22	NM_023013	exon3	c.C363T	p.A121A	CTGGGCCCTGTCC	.	272	20	242	4	.	0	0	0	0	0
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	83	6	90	1	.	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22191512	22191512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HSPG2-141	NM_005529	exon36	c.G4450T	p.A1484S	CCAGTGCCATCAG	.	94	7	26	0	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	13	11	0	0	G|0.061;T|0.939	0	0	0	0	0
EVA1B	55194	hgsc.bcm.edu	37	1	36787970	36787970	+	Missense_Mutation	SNP	C	C	G	rs199975369		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_018166	exon3	c.G424C	p.D142H	GCAGGTCCGGCTG	.	32	13	0	0	C|0.998;G|0.002	0	0	0	0	0
MEAF6	64769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	37979141	37979141	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MEAF6-90	NM_022756	exon3	c.91-2A>G	.	GTTTCCTGAGAGA	.	129	24	144	0	.	0	0	0	0	0
ATP6V0B	533	hgsc.bcm.edu	37	1	44440769	44440769	+	Silent	SNP	G	G	C	rs2286241		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ATP6V0B-153	NM_004047	exon1	c.G57C	p.A19A	CTGCGCGCTGGCC	.	51	17	0	0	G|0.914;C|0.086	0	0	0	0	0
DMRTA2	63950	broad.mit.edu	37	1	50886849	50886849	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_032110	exon2	c.G360A	p.A120A	CTCCTGCGCCTGC	.	110	11	10	0	.	0	0	0	0	0
FOXD3	27022	hgsc.bcm.edu	37	1	63788951	63788951	+	Silent	SNP	C	C	A	rs2274187	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	FOXD3-226	NM_012183	exon1	c.C222A	p.P74P	GCCGCCCCACCAG	.	31	17	1	0	C|0.842;A|0.158	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	6	6	0	0	G|0.680;C|0.320	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	6	4	0	0	G|0.500;A|0.500	0	0	0	0	0
POLR3C	10623	broad.mit.edu;bcgsc.ca	37	1	145594075	145594075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	POLR3C-91	NM_006468	exon14	c.G1487A	p.R496H	TGCTGACGTTCAG	.	166	6	140	0	.	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	11	5	0	0	A|0.594;C|0.406	0	0	0	0	0
SLC27A3	11000	hgsc.bcm.edu	37	1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	rs34527123	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SLC27A3-91	NM_024330	exon1	c.G329C	p.G110A	CCGAGGGGGGCTG	.	16	8	2	0	G|0.051;C|0.949	0	0	0	0	0
LRRC71	149499	broad.mit.edu;bcgsc.ca	37	1	156902292	156902292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	LRRC71-91	NM_144702	exon14	c.G1518T	p.K506N	GGCCAAGAGTGCA	.	307	22	284	1	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	8	8	0	0	T|0.229;C|0.771	0	0	0	0	0
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196300332	196300332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KCNT2-159	NM_198503	exon18	c.A2057G	p.H686R	AGGAGATGACAAA	.	318	27	253	0	.	0	0	0	0	0
KIF14	9928	bcgsc.ca	37	1	200558420	200558420	+	Silent	SNP	C	C	T	rs77213709	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KIF14-140	NM_014875	exon18	c.G3039A	p.K1013K	CTTTGCCTTTTCT	.	54	4	62	0	C|0.996;T|0.004	0	0	0	0	0
C1orf116	79098	broad.mit.edu	37	1	207198284	207198284	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	C1orf116-93	NM_023938	exon3	c.C231T	p.A77A	AGTTGTGGCTGGC	.	94	5	89	2	.	0	0	0	0	0
DNAH14	127602	broad.mit.edu	37	1	225195164	225195173	+	Frame_Shift_Del	DEL	TACAGCAAGC	TACAGCAAGC	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	DNAH14-23	NM_001145154	exon10	c.1025_1034del	p.342_345del	AGCAGTTACAGCA	.	225	9	257	0	.	0	0	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51585241	51585241	+	Missense_Mutation	SNP	A	A	G	rs61754798	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NCOA4-1042	NM_001145261	exon9	c.A1388G	p.K463R	AACCCAAACCTGA	.	119	3	121	0	A|0.997;G|0.003	0	0	0	0	0
PCDH15	65217	broad.mit.edu;bcgsc.ca	37	10	55582016	55582016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PCDH15-193	NM_001142763	exon35	c.T5491A	p.S1831T	GAATAGAAGGAGG	.	254	12	278	0	.	0	0	0	0	0
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103558728	103558728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MGEA5-93	NM_012215	exon9	c.A1680C	p.L560F	AGCAAGTAACTGC	.	95	6	109	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	23	23	0	0	A|0.009;G|0.991	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	108434909	108434909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SORCS1-153	NM_001206572	exon14	c.G1838A	p.S613N	TCAAAACTCAACC	.	62	5	53	0	.	0	0	0	0	0
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	116057115	116057115	+	Missense_Mutation	SNP	C	C	T	rs145837129		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AFAP1L2-136	NM_032550	exon17	c.G2171A	p.R724Q	TCGCCCCGGCACT	.	69	7	64	0	C|1.000;T|0.000	0	0	0	0	0
CPXM2	119587	broad.mit.edu	37	10	125651141	125651141	+	Missense_Mutation	SNP	G	G	T	rs201350090		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CPXM2-92	NM_198148	exon1	c.C35A	p.A12D	ACCAGGGCCAGCG	.	50	5	15	1	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PWWP2B-90	NM_001098637	exon2	c.G1032A	p.E344E	CAGCGAGCACGAG	.	16	9	0	0	G|0.909;A|0.091	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	18	10	0	0	C|0.860;T|0.140	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093112	1093112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MUC2-90	NM_002457	exon30	c.C4931T	p.P1644L	CAACACCCACCGG	.	126	6	97	1	.	0	0	0	0	0
EIF3F	8665	hgsc.bcm.edu	37	11	8009015	8009015	+	Missense_Mutation	SNP	C	C	T	rs1043738	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	EIF3F-500	NM_003754	exon1	c.C116T	p.P39L	CGGTTCCCGCTGC	.	33	16	1	0	C|0.964;T|0.036	0	0	0	0	0
TTC17	55761	broad.mit.edu	37	11	43469578	43469578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TTC17-95	NM_018259	exon19	c.G2692A	p.G898R	CGTCTGGGATGGC	.	89	4	101	0	.	0	0	0	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64607032	64607032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CDC42BPG-528	NM_017525	exon6	c.C593A	p.P198Q	TTGTCTGGCTTGA	.	86	4	66	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67161249	67161249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RAD9A-227	NM_004584	exon5	c.G437A	p.R146H	TGCTCCGCGCCCC	.	122	9	78	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	22	12	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	37	22	0	0	C|0.752;T|0.248	0	0	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_032849	exon1	c.A175G	p.R59G	GTGGCCAGGCCCG	.	6	6	0	0	A|0.219;G|0.781	0	0	0	0	0
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69256542	69256542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFP36L1-91	NM_001244701	exon3	c.C932G	p.T311S	GGCAGGGTAGGTG	.	72	11	63	0	.	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	25	16	2	0	T|0.478;C|0.522	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	19	8	2	0	C|0.941;T|0.059	0	0	0	0	0
LTK	4058	hgsc.bcm.edu	37	15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	rs55739813	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	LTK-1377	NM_001135685	exon6	c.C680T	p.P227L	AGCAACGGTTCCA	.	17	13	0	0	G|0.962;A|0.038	0	0	0	0	0
C2CD4B	388125	hgsc.bcm.edu	37	15	62456945	62456945	+	Missense_Mutation	SNP	G	G	A	rs8025811		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	C2CD4B-68	NM_001007595	exon2	c.C239T	p.P80L	GAGCGCGGGTCCC	.	4	4	0	0	G|0.851;A|0.149	0	0	0	0	0
COX5A	9377	hgsc.bcm.edu	37	15	75230320	75230320	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	COX5A-90	NM_004255	exon1	c.C36T	p.A12A	GGTTGCGGCCACA	.	14	11	0	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu	37	15	79092715	79092715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ADAMTS7-226	NM_014272	exon2	c.G275A	p.R92H	TTGAAGCGCAGCT	.	97	10	16	0	.	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320146	90320146	+	Silent	SNP	G	G	A	rs28546919	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MESP2-68	NM_001039958	exon1	c.G558A	p.Q186Q	GGGGCAGGGGCAG	.	4	4	0	0	A|1.000;|0.000	0	0	0	0	0
FES	2242	hgsc.bcm.edu	37	15	91433508	91433508	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	FES-546	NM_001143784	exon8	c.G1236A	p.S412S	GTCCTCGGTGAGC	.	58	37	1	0	.	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	6	6	0	0	A|0.263;G|0.737	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1259249	1259249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CACNA1H-67	NM_021098	exon17	c.G3581A	p.R1194Q	CACTGCGGCGGGC	.	20	14	0	0	.	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	6	6	0	0	C|0.615;G|0.385	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	9	7	2	0	G|0.570;T|0.430	0	0	0	0	0
APOBR	55911	hgsc.bcm.edu	37	16	28507412	28507412	+	Silent	SNP	A	A	C	rs62034315		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	APOBR-90	NM_018690	exon2	c.A1050C	p.G350G	CTCAGGAGGGGAG	.	25	6	17	0	A|0.500;C|0.500	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	8	8	2	0	T|0.035;G|0.004	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	5	5	0	0	G|0.001;A|0.999	0	0	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MTSS1L-68	NM_138383	exon15	c.G1623T	p.G541G	GGGCAGCCCAGCA	.	69	10	24	2	.	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	22	22	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	23	15	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	23	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	18	15	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	18	15	0	0	.	0	0	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ANKRD11-139	NM_001256183	exon9	c.A6044C	p.Y2015S	GCGGGGTACGGCG	.	43	18	11	2	.	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	19	10	0	0	C|0.846;T|0.154	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	24	12	0	0	T|0.657;C|0.343	0	0	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	13	6	4	0	C|0.839;T|0.161	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18024266	18024266	+	Missense_Mutation	SNP	T	T	G	rs2955367	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MYO15A-97	NM_016239	exon2	c.T2152G	p.W718G	GCCAGCTGGTGGG	.	13	5	3	0	T|0.570;G|0.430	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	10	10	0	0	G|0.001;C|0.999	0	0	0	0	0
KRT33B	3884	broad.mit.edu	37	17	39521201	39521201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KRT33B-90	NM_002279	exon6	c.C927T	p.S309S	CAGCTGGGAGCTG	.	129	5	113	0	.	0	0	0	0	0
AKAP1	8165	broad.mit.edu;bcgsc.ca	37	17	55182842	55182842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AKAP1-227	NM_001242902	exon3	c.G17A	p.R6H	AGTTCCGTTCGCT	.	132	6	126	0	.	0	0	0	0	0
SLC14A1	6563	bcgsc.ca	37	18	43319519	43319519	+	Missense_Mutation	SNP	G	G	A	rs1058396	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SLC14A1-515	NM_001146037	exon7	c.G1006A	p.D336N	TTTGAGGACATCT	.	118	5	107	0	G|0.587;A|0.413	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	917526	917526	+	Silent	SNP	A	A	G	rs10407968	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KISS1R-91	NM_032551	exon1	c.A24G	p.G8G	GTCCGGACCCAAC	.	15	6	2	0	A|0.821;G|0.179	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	15	15	0	0	A|0.114;G|0.886	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu	37	19	1062277	1062277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ABCA7-98	NM_019112	exon42	c.C5677T	p.R1893C	CTTGCGCGCCTGC	.	92	7	17	0	.	0	0	0	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881453	1881453	+	Missense_Mutation	SNP	A	A	C	rs201595201	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	FAM108A1-90	NM_031213	exon2	c.T113G	p.V38G	TCAGGCACCAGGG	.	41	4	3	0	A|0.960;C|0.040	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KANK3-90	NM_198471	exon3	c.G60C	p.P20P	GGGGACCGGGCAC	.	5	5	0	0	C|0.880;G|0.120	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	31	21	1	0	C|0.788;T|0.212	0	0	0	0	0
SYDE1	85360	hgsc.bcm.edu	37	19	15220850	15220850	+	Missense_Mutation	SNP	G	G	A	rs2240297		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SYDE1-92	NM_033025	exon3	c.G766A	p.A256T	GGTCCCGCAGCCC	.	7	5	0	0	G|0.790;A|0.210	0	0	0	0	0
UPK1A	11045	broad.mit.edu	37	19	36168763	36168763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	UPK1A-90	NM_007000	exon6	c.T698C	p.I233T	GGGGTATCTCGTG	.	82	5	78	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	24	24	0	0	G|0.349;A|0.651	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258619	48258619	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	GLTSCR2-514	NM_015710	exon9	c.C1068T	p.A356A	GCAGGCCGCGTTG	.	25	17	0	0	.	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	20	18	0	0	A|0.868;G|0.132	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	14	14	0	0	T|0.228;C|0.772	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56000896	56000896	+	Silent	SNP	G	G	T	rs62130160	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_001195267	exon3	c.G228T	p.G76G	CTTCGGGGAGGGG	.	7	6	0	0	G|0.897;T|0.103	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	5	5	0	0	A|0.003;G|0.997	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21233524	21233524	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	APOB-175	NM_000384	exon26	c.A6216T	p.P2072P	AAAAAATGGGAGG	.	79	7	84	0	.	0	0	0	0	0
NOTO	344022	hgsc.bcm.edu	37	2	73429808	73429808	+	Missense_Mutation	SNP	G	G	C	rs1864492	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_001134462	exon1	c.G14C	p.R5T	GCCCCAGGCCGCG	.	6	5	1	0	G|0.286;C|0.714	0	0	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	8	4	0	0	A|0.476;G|0.524	0	0	0	0	0
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88485425	88485425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	THNSL2-91	NM_018271	exon8	c.G1238T	p.R413L	CTCCCCGGTGCTG	.	187	15	158	0	.	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	16	16	0	0	A|0.029;G|0.971	0	0	0	0	0
KIAA1715	80856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176856974	176856974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KIAA1715-93	NM_030650	exon4	c.T242G	p.F81C	AAAGCAAAAAATG	.	228	55	218	0	.	0	0	0	0	0
C20orf194	25943	broad.mit.edu	37	20	3268420	3268420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	C20orf194-68	NM_001009984	exon27	c.C2344A	p.Q782K	TGATTTGGCGATA	.	93	3	89	0	.	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	10	5	0	0	C|0.751;T|0.249	0	0	0	0	0
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43943206	43943206	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RBPJL-227	NM_014276	exon9	c.1020+1G>C	.	TTTCAGGTAAGAA	.	118	10	106	0	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	7	7	0	0	C|0.999;T|0.001	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	30	4	3	0	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	34	4	5	0	.	0	0	0	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038077	62038077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KCNQ2-92	NM_172107	exon17	c.A2539C	p.T847P	ACGGGGTACAGAG	.	51	22	28	6	.	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KRTAP10-10-90	NM_181688	exon1	c.T291C	p.P97P	TGTGCCTGTCTGC	.	128	10	93	0	C|1.000;|0.000	0	0	0	0	0
SEPT5	5413	hgsc.bcm.edu	37	22	19706333	19706333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SEPT5-636	NM_001009939	exon1	c.C73A	p.R25R	CAGAGGCGGCTCA	.	48	9	10	0	.	0	0	0	0	0
XBP1	7494	hgsc.bcm.edu	37	22	29196469	29196469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	XBP1-290	NM_001079539	exon1	c.C44T	p.P15L	ACTTTAGGGGTCC	.	14	8	2	0	.	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MST1-278	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA	.	109	6	88	1	G|0.995;A|0.005	0	0	0	0	0
DZIP3	9666	broad.mit.edu;bcgsc.ca	37	3	108363212	108363212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	DZIP3-91	NM_014648	exon14	c.C1343T	p.S448L	GTGGATCATGGCA	.	162	7	155	0	.	0	0	0	0	0
KIAA2018	205717	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113377864	113377864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KIAA2018-93	NM_001009899	exon7	c.T2665C	p.S889P	GGCTGGACTTTTC	.	69	8	93	1	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	20	10	0	0	T|0.412;A|0.588	0	0	0	0	0
ADCY5	111	hgsc.bcm.edu	37	3	123167249	123167249	+	Silent	SNP	G	G	A	rs4678027		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ADCY5-94	NM_183357	exon1	c.C144T	p.G48G	GGCAGAGCCCCCG	.	5	5	0	0	G|0.028;A|0.972	0	0	0	0	0
MME	4311	broad.mit.edu	37	3	154884759	154884759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MME-516	NM_007287	exon18	c.G1729T	p.G577C	TATGGGGGCATCG	.	135	5	105	0	.	0	0	0	0	0
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	173322702	173322702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NLGN1-231	NM_014932	exon3	c.C314A	p.S105X	CCTGGTCAGATAT	.	135	16	102	0	.	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	236	109	70	21	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	81	10	6	0	C|0.960;G|0.040	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu;ucsc.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	89	11	18	0	C|1.000;|0.000	0	0	0	0	0
TACC3	10460	broad.mit.edu	37	4	1730380	1730380	+	Silent	SNP	G	G	T	rs189023732	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TACC3-91	NM_006342	exon4	c.G1251T	p.P417P	CATCCCGTTCGGA	.	77	3	67	0	G|0.999;A|0.000	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	71	14	7	0	.	0	0	0	0	0
KIAA1239	57495	broad.mit.edu	37	4	37435529	37435529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_001144990	exon5	c.A593G	p.K198R	ACGAGAAGACATG	.	210	5	195	0	.	0	0	0	0	0
NFXL1	152518	bcgsc.ca	37	4	47887536	47887536	+	Silent	SNP	T	T	C	rs2053404	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NFXL1-524	NM_152995	exon14	c.A1803G	p.A601A	TATTAATGCTTGA	.	197	8	191	0	T|0.278;C|0.722	0	0	0	0	0
UGT2B11	10720	ucsc.edu	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	UGT2B11-93	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA	.	61	8	77	3	.	0	0	0	0	0
SLC22A5	6584	broad.mit.edu	37	5	131705923	131705923	+	Missense_Mutation	SNP	G	G	C	rs199942468		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SLC22A5-90	NM_003060	exon1	c.G259C	p.A87P	CGGCTCGCCACCA	.	95	20	30	1	.	0	0	0	0	0
SLC22A5	6584	broad.mit.edu	37	5	131705926	131705926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SLC22A5-90	NM_003060	exon1	c.A262C	p.T88P	CTCGCCACCATCG	.	104	25	40	3	.	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	14	7	0	0	T|0.632;C|0.368	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	26	26	0	0	A|0.006;G|0.994	0	0	0	0	0
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161015130	161015130	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	LPA-74	NM_005577	exon23	c.C3489T	p.P1163P	GACCCCGGGGCTT	.	123	18	118	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	5	5	0	0	G|0.411;T|0.589	0	0	0	0	0
TNRC18	84629	broad.mit.edu	37	7	5417170	5417170	+	Missense_Mutation	SNP	G	G	A	rs200992316		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TNRC18-46	NM_001080495	exon7	c.C2293T	p.P765S	TGGTAGGGTGCAG	.	277	6	201	1	.	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu	37	7	11441492	11441492	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	THSD7A-71	NM_015204	exon22	c.G4341A	p.P1447P	AATCACCGGTCTG	.	56	5	73	0	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	45	11	15	0	.	0	0	0	0	0
HOXA10	3206	hgsc.bcm.edu	37	7	27213228	27213228	+	Missense_Mutation	SNP	G	G	A	rs201915532		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HOXA10-68	NM_018951	exon1	c.C698T	p.A233V	TGCTGCGCGCCGC	.	4	4	0	0	G|0.998;A|0.002	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	21	8	0	0	C|0.329;G|0.671	0	0	0	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KCP-68	NM_001135914	exon2	c.49+1G>-	.	CCAGGGCCCCCGA	.	12	10	0	0	.	0	0	0	0	0
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138958801	138958801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	UBN2-70	NM_173569	exon11	c.A1954G	p.K652E	TGGCCTAAGGGCT	.	76	10	71	0	.	0	0	0	0	0
KLRG2	346689	hgsc.bcm.edu	37	7	139168063	139168063	+	Missense_Mutation	SNP	G	G	A	rs12707447		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KLRG2-90	NM_198508	exon1	c.C326T	p.A109V	CCGGGCGCCTCGC	.	6	6	0	0	G|0.735;A|0.265	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0
GPR20	2843	ucsc.edu	37	8	142367335	142367335	+	Missense_Mutation	SNP	T	T	C	rs10875472	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	GPR20-91	NM_005293	exon2	c.A689G	p.H230R	CCCTGGTGGAGCA	.	59	28	13	1	T|0.236;C|0.764	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	7	7	0	0	A|0.118;G|0.882	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	13	13	0	0	G|0.992;C|0.006	0	0	0	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	10	10	0	0	C|0.976;G|0.024	0	0	0	0	0
ARHGEF39	84904	broad.mit.edu	37	9	35665121	35665121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_032818	exon1	c.C46A	p.R16S	GGGCACGCTGCTC	.	168	10	49	0	.	0	0	0	0	0
KIF27	55582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86504155	86504155	+	Missense_Mutation	SNP	G	G	A	rs150984973		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KIF27-523	NM_017576	exon7	c.C1823T	p.P608L	ATAGGCGGACTTG	.	146	14	124	1	G|1.000;A|0.000	0	0	0	0	0
TRIM14	9830	hgsc.bcm.edu	37	9	100849946	100849946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	TRIM14-226	NM_033219	exon6	c.C1135T	p.R379C	GGCTGCGCTGGCC	.	68	39	0	0	.	0	0	0	0	0
CDX4	1046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	72674420	72674420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CDX4-130	NM_005193	exon3	c.G854T	p.X285L	CCGAATGAAAGAA	.	95	10	110	0	.	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	PCGF6-226	NM_032154	exon1	c.84_85insGCCTCC	p.P28delinsPPP	GGAGACAGGAGGC	.	16	11	0	0	-|0.590;GGAGGC|0.410	0	0	0	0	0
C17orf64	124773	broad.mit.edu	37	17	58499989	58499990	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	C17orf64-271	NM_181707	exon1	c.36_37insA	p.D12fs	AGGGGACAAGCCA	.	125	9	135	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	102	0	70	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	347	0	330	0	.	0	0	0	0	0
AGPAT2	10555	broad.mit.edu	37	9	139581758	139581759	+	In_Frame_Ins	INS	-	-	CAG	rs201504151		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AGPAT2-90	NM_006412	exon1	c.52_53insCTG	p.V18delinsLV	GCTGCACCAGCAG	.	45	14	7	0	-|0.922;CAG|0.078	0	0	0	0	0