Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 HES3 390992 hgsc.bcm.edu 37 1 6305292 6305292 + Missense_Mutation SNP C C A rs61760836 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . HES3-514 NM_001024598 exon4 c.C286A p.P96T CTGGTGCCCGAGA . 5 5 0 0 C|0.430;A|0.570 0 0 0 0 0 HES3 390992 hgsc.bcm.edu 37 1 6305303 6305303 + Silent SNP C C A rs61760837 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . HES3-514 NM_001024598 exon4 c.C297A p.A99A GAGCGCCGCCGGC . 5 5 0 0 C|0.438;A|0.562 0 0 0 0 0 HES3 390992 hgsc.bcm.edu 37 1 6305321 6305321 + Silent SNP C C T rs180888799 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . HES3-514 NM_001024598 exon4 c.C315T p.D105D CATGGACAGCGCC . 5 5 0 0 C|0.995;T|0.005 0 0 0 0 0 TAS1R2 80834 broad.mit.edu 37 1 19181387 19181387 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TAS1R2-93 NM_152232 exon3 c.G577T p.A193S CCATGGCCTCGAT . 73 6 54 0 . 0 0 0 0 0 FAM46B 115572 hgsc.bcm.edu 37 1 27339103 27339103 + Missense_Mutation SNP G G T rs4970471 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FAM46B-90 NM_052943 exon1 c.C59A p.T20K GCAGCCGTCCCCA . 5 5 0 0 G|0.670;T|0.330 0 0 0 0 0 OPRD1 4985 hgsc.bcm.edu 37 1 29138975 29138975 + Missense_Mutation SNP G G T rs1042114 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . OPRD1-69 NM_000911 exon1 c.G80T p.C27F GCGCCTGCCCCAG . 15 14 0 0 G|0.061;T|0.939 0 0 0 0 0 RSBN1 54665 hgsc.bcm.edu 37 1 114354654 114354654 + Silent SNP T T C rs3195954 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RSBN1-91 NM_018364 exon1 c.A381G p.P127P ATTCGTTGGCGGC . 26 25 4 0 T|0.861;C|0.139 2 1 1 0 0 THEM4 117145 hgsc.bcm.edu 37 1 151881885 151881885 + Missense_Mutation SNP A A C rs3748805 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . THEM4-522 NM_053055 exon1 c.T50G p.L17R GGCGGCAGGCACA . 8 8 0 0 T|0.073;G|0.921 13 0 13 0 0 ITLN2 142683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160922445 160922445 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ITLN2-91 NM_080878 exon3 c.G158T p.C53F TCTTTGCAGCTTC . 111 41 78 0 . 0 0 0 0 0 C1orf106 55765 hgsc.bcm.edu 37 1 200880978 200880978 + Missense_Mutation SNP C C T rs296520 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C1orf106-93 NM_018265 exon9 c.C1654T p.R552C GAGCTGCGCCGCG . 39 23 1 0 C|0.242;T|0.758 0 0 0 0 0 TATDN3 128387 broad.mit.edu 37 1 212988479 212988479 + Missense_Mutation SNP G G A rs147372063 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TATDN3-22 NM_001146171 exon10 c.G827A p.R276Q AGCTCCGACACTT . 78 4 64 2 G|0.999;A|0.001 46 46 0 0 0 KCTD3 51133 hgsc.bcm.edu 37 1 215741053 215741053 + Missense_Mutation SNP T T G rs2275768 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KCTD3-93 NM_016121 exon1 c.T25G p.F9V GGCAGCTTCCCCG . 18 18 0 0 T|0.721;G|0.279 6 0 6 0 0 KCTD3 51133 ucsc.edu;bcgsc.ca 37 1 215781465 215781465 + Silent SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KCTD3-93 NM_016121 exon14 c.C1416A p.S472S ACTATCCCTGGAG . 181 77 162 2 . 97 64 33 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228504670 228504670 + Missense_Mutation SNP C C T rs11810627 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . OBSCN-403 NM_001271223 exon62 c.C16417T p.R5473W TCTGCGCGGCTCA . 61 61 0 0 C|0.643;T|0.357 0 0 0 0 0 FAM25B 100132929 broad.mit.edu 37 10 49207753 49207753 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001137556 exon1 c.G47T p.R16L TCGGTGCGGTGGG . 327 33 246 1 . 0 0 0 0 0 KCNMA1 3778 hgsc.bcm.edu 37 10 78729786 78729786 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KCNMA1-93 NM_001161352 exon20 c.2306delA p.K769fs CGTTGCTTTTTTT . 194 12 181 5 . 0 0 0 0 0 FAM178A 55719 hgsc.bcm.edu;bcgsc.ca 37 10 102676854 102676854 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001136123 exon3 c.712delT p.L238fs TTCCAGTTGTCAC . 171 54 235 1 . 0 0 0 0 0 NFKB2 4791 hgsc.bcm.edu 37 10 104159196 104159196 + Silent SNP A A G rs4919633 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . NFKB2-522 NM_001077494 exon13 c.A1269G p.P423P GGAGCCAAGCGCC . 18 18 0 0 A|0.009;G|0.991 9 0 9 0 0 PWWP2B 170394 hgsc.bcm.edu 37 10 134219066 134219066 + Silent SNP G G C rs76595411 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PWWP2B-90 NM_001098637 exon2 c.G1062C p.V354V GCTGGTGGGGGAG . 22 5 3 0 G|0.955;C|0.045 32 25 7 0 0 MUC2 4583 broad.mit.edu 37 11 1093069 1093069 + Missense_Mutation SNP A A G rs201496058 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MUC2-90 NM_002457 exon30 c.A4888G p.T1630A ACCCCAACAGCCA . 112 15 78 2 . 0 0 0 0 0 WEE1 7465 hgsc.bcm.edu 37 11 9595768 9595768 + Silent SNP C C T rs117347074 byfrequency;by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . WEE1-1404 NM_003390 exon1 c.C288T p.P96P GCTGCCCGGCGCC . 8 6 0 0 C|0.953;T|0.047 0 0 0 0 0 RAG1 5896 broad.mit.edu;bcgsc.ca 37 11 36596586 36596586 + Silent SNP T T C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RAG1-230 NM_000448 exon2 c.T1732C p.L578L GACATCTTGGAAG . 238 8 194 0 . 0 0 0 0 0 FNBP4 23360 hgsc.bcm.edu 37 11 47788664 47788669 + In_Frame_Del DEL GGTGGT GGTGGT - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 GGTGGT GGTGGT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FNBP4-91 NM_015308 exon1 c.172_177del p.58_59del CACCGCGGTGGTG . 25 11 2 0 . 0 0 0 0 0 LRRC10B 390205 hgsc.bcm.edu 37 11 61277031 61277031 + Silent SNP C C T rs1139011 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001145077 exon1 c.C561T p.L187L CATCCTCGACCTC . 36 16 0 0 C|0.816;T|0.184 0 0 0 0 0 SAC3D1 29901 hgsc.bcm.edu 37 11 64809090 64809090 + Missense_Mutation SNP T T G rs12271134 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SAC3D1-90 NM_013299 exon1 c.T326G p.L109R CTGTGCTCCTGGA . 4 4 0 0 T|0.005;G|0.995 4 0 4 0 0 TM7SF2 7108 hgsc.bcm.edu 37 11 64880090 64880090 + Silent SNP G G C rs4930284 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TM7SF2-91 NM_003273 exon2 c.G156C p.P52P CCTGCCGGGGCTG . 14 14 0 0 G|0.005;C|0.995 299 1 298 0 0 MAML2 84441 ucsc.edu 37 11 95825383 95825383 + Silent SNP C C T rs113349418 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MAML2-850 NM_032427 exon2 c.G1812A p.Q604Q CTGCTGCTGCTGC . 186 37 159 0 C|0.500;T|0.500 62 43 19 0 0 MAML2 84441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 95825407 95825407 + Silent SNP C C T rs61901862 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MAML2-850 NM_032427 exon2 c.G1788A p.Q596Q CTGCTGCTGCTGC . 220 24 180 0 C|0.250;T|0.750 121 109 12 0 0 PRDM10 56980 broad.mit.edu;bcgsc.ca 37 11 129788483 129788483 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PRDM10-91 NM_020228 exon15 c.C2177T p.T726M TTGAACGTGAAGC . 169 8 120 0 . 0 0 0 0 0 GLB1L2 89944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134240909 134240909 + Missense_Mutation SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GLB1L2-25 NM_138342 exon13 c.A1223G p.K408R CAATCAAGTCTGA . 98 45 63 0 . 0 0 0 0 0 ATN1 1822 broad.mit.edu 37 12 7047103 7047103 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ATN1-139 NM_001007026 exon6 c.C2390A p.A797D AGCGGGCCGACCT . 232 12 29 1 . 138 135 1 2 0 FAM186A 121006 broad.mit.edu 37 12 50747102 50747102 + Silent SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FAM186A-68 NM_001145475 exon4 c.T3513C p.L1171L AGGGGTAAGAGGG . 124 7 110 1 . 0 0 0 0 0 KRT4 3851 bcgsc.ca 37 12 53207603 53207603 + Silent SNP A A G rs7135148 bycluster;by2hit2allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KRT4-96 NM_002272 exon1 c.T240C p.F80F AGTGCCAAAGCCT . 101 9 47 0 A|1.000;|0.000 0 0 0 0 0 KRT4 3851 bcgsc.ca 37 12 53207606 53207606 + Silent SNP G G A rs79164931 bycluster;by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KRT4-96 NM_002272 exon1 c.C237T p.G79G GCCAAAGCCTCCA . 102 8 49 0 . 0 0 0 0 0 ITGA7 3679 broad.mit.edu 37 12 56094084 56094084 + Missense_Mutation SNP T T G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ITGA7-229 NM_001144996 exon5 c.A764C p.D255A CGGGGGTCCTGCT . 71 14 38 7 . 6 6 0 0 0 MARCH9 92979 hgsc.bcm.edu 37 12 58149446 58149446 + Silent SNP C C T rs1689582 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MARCH9-492 NM_138396 exon1 c.C135T p.G45G CGCTGGCTGCTCC . 4 4 0 0 T|0.004;G|0.064 0 0 0 0 0 DUSP6 1848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 89744754 89744754 + Missense_Mutation SNP T T C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . DUSP6-846 NM_001946 exon2 c.A449G p.N150S TCTAGATTGGTCT . 45 24 33 0 . 17 13 4 0 0 LHX5 64211 hgsc.bcm.edu 37 12 113901232 113901232 + Silent SNP T T C rs202131487 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LHX5-90 NM_022363 exon5 c.A972G p.G324G CAGCGCTCCCAGC . 37 18 2 0 . 0 0 0 0 0 C12orf49 79794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117160973 117160973 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C12orf49-91 NM_024738 exon2 c.C167T p.P56L GGGATGGGCTGAT . 250 47 204 0 . 9 7 2 0 0 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 120616700 120616700 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GCN1L1-94 NM_006836 exon6 c.C480T p.H160H CACGGCGTGCTTG . 75 28 67 0 . 5 2 3 0 0 FBRSL1 57666 hgsc.bcm.edu 37 12 133159733 133159733 + Missense_Mutation SNP C C T rs11550079 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FBRSL1-70 NM_001142641 exon17 c.C2507T p.A836V AGGAGGCCGCCAA . 11 10 0 0 C|0.470;T|0.530 8 5 2 0 1 EFHA1 221154 hgsc.bcm.edu 37 13 22178258 22178258 + Silent SNP C C T rs9509812 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . EFHA1-90 NM_152726 exon1 c.G30A p.R10R CGCCACCCGCGCG . 15 11 2 0 C|0.873;T|0.127 7 0 7 0 0 RASL11A 387496 broad.mit.edu;bcgsc.ca 37 13 27847550 27847550 + Silent SNP C C G rs148298639 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RASL11A-522 NM_206827 exon4 c.C648G p.R216R GCCCCGCTCTCCC . 149 5 217 1 C|0.992;G|0.008 4 4 0 0 0 RB1 5925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 48934194 48934194 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RB1-3784 NM_000321 exon7 c.C649T p.Q217X TCATTTCAGTTAA . 32 24 85 0 . 0 0 0 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 49 9 16 0 . 11 11 0 0 0 ACIN1 22985 ucsc.edu 37 14 23548787 23548787 + Missense_Mutation SNP C C T rs61741619 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ACIN1-156 NM_001164814 exon6 c.G1931A p.R644H CGAGAACGTGAAC . 236 45 197 0 C|0.985;T|0.015 0 0 0 0 0 ARHGAP5 394 bcgsc.ca 37 14 32561296 32561296 + Missense_Mutation SNP T T C rs200111638 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ARHGAP5-94 NM_001173 exon2 c.T1421C p.V474A AAGAGGTATATGG . 190 7 170 2 T|0.999;C|0.001 2 2 0 0 0 OTX2 5015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 57268974 57268974 + Missense_Mutation SNP G G C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . OTX2-205 NM_001270525 exon3 c.C373G p.P125A GAGCTGGAGATGT . 56 22 42 0 . 0 0 0 0 0 PLEKHG3 26030 hgsc.bcm.edu 37 14 65210339 65210339 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PLEKHG3-91 NM_015549 exon15 c.C3410T p.S1137F AGGGTTCCAGGGA . 65 4 57 0 . 7 7 0 0 0 ACOT4 122970 hgsc.bcm.edu 37 14 74058832 74058832 + Missense_Mutation SNP C C T rs3742819 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ACOT4-90 NM_152331 exon1 c.C169T p.R57C GACGCCCGCGGCG . 20 18 0 0 T|0.002;G|0.599 1 0 1 0 0 ASB2 51676 broad.mit.edu 37 14 94405527 94405527 + Missense_Mutation SNP T T G rs199833352 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ASB2-228 NM_001202429 exon8 c.A1544C p.H515P GGCGGGTGCGGGC . 178 42 22 0 . 1 1 0 0 0 DICER1 23405 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 95571420 95571420 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . DICER1-961 NM_030621 exon21 c.3257delC p.P1086fs TCCGCAGGAAGTG . 140 64 115 0 . 0 0 0 0 0 CEP170B 283638 broad.mit.edu 37 14 105352885 105352890 + In_Frame_Del DEL GCAGGA GCAGGA - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001112726 exon12 c.2309_2314del p.770_772del GCAGACGCAGGAG . 35 13 5 0 . 0 0 0 0 0 AHNAK2 113146 bcgsc.ca 37 14 105414629 105414629 + Missense_Mutation SNP G G A rs72702027 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . AHNAK2-47 NM_138420 exon7 c.C7159T p.P2387S CCTCTGGGAGTTT . 191 6 132 0 G|0.478;A|0.522 0 0 0 0 0 LACTB 114294 hgsc.bcm.edu 37 15 63414083 63414083 + Missense_Mutation SNP A A C rs34317102 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LACTB-90 NM_171846 exon1 c.A13C p.M5L CGGCTCATGTCAG . 13 6 0 0 A|0.226;C|0.774 5 5 0 0 0 MTFMT 123263 hgsc.bcm.edu 37 15 65321938 65321938 + Missense_Mutation SNP A A G rs2946655 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MTFMT-24 NM_139242 exon1 c.T14C p.V5A CGCCGCACCAACA . 22 8 0 0 A|0.942;G|0.058 19 5 14 0 0 KBTBD13 390594 hgsc.bcm.edu 37 15 65369947 65369947 + Missense_Mutation SNP G G A rs146917406 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001101362 exon1 c.G794A p.G265D TCGGCGGCGAATT . 28 16 4 0 G|0.992;A|0.008 0 0 0 0 0 RPS2 6187 hgsc.bcm.edu 37 16 2014528 2014528 + Silent SNP G G A rs17135712 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RPS2-90 NM_002952 exon2 c.C99T p.I33I GCCCCGGATGCCA . 22 8 0 0 G|0.933;A|0.067 230 75 155 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2059674 2059674 + Missense_Mutation SNP T T C rs71384660 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZNF598-432 NM_178167 exon2 c.A74G p.E25G CCGCCTTCCCGCT . 6 6 0 0 T|0.007;C|0.993 8 0 8 0 0 TSC2 7249 bcgsc.ca 37 16 2138269 2138269 + Silent SNP T T C rs1748 bycluster;byfrequency;byhapmap;by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TSC2-1908 NM_000548 exon41 c.T5202C p.D1734D CACCGATATCTAC . 121 5 56 0 T|0.505;G|0.066;C|0.239;A|0.190 65 65 0 0 0 RSL1D1 26156 bcgsc.ca 37 16 11940390 11940390 + Silent SNP T T C rs8052900 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RSL1D1-90 NM_015659 exon5 c.A603G p.T201T TAAGACTGTTCCA . 112 6 119 0 T|0.271;C|0.729 131 130 1 0 0 GP2 2813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20335574 20335574 + Silent SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GP2-94 NM_001502 exon3 c.T99C p.Y33Y GTTTCCATAACCT . 208 82 149 0 . 0 0 0 0 0 RBBP6 5930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24580870 24580870 + Missense_Mutation SNP A A C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RBBP6-230 NM_006910 exon17 c.A2859C p.L953F AGAGTTATTAGAG . 78 35 60 0 . 17 6 11 0 0 INO80E 283899 broad.mit.edu 37 16 30007665 30007665 + Frame_Shift_Del DEL A A - rs34220380 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . INO80E-91 NM_173618 exon1 c.34delA p.K12fs GACTACAAAAAAA . 310 8 174 0 . 0 0 0 0 0 IRX3 79191 hgsc.bcm.edu 37 16 54318528 54318528 + Missense_Mutation SNP A A G rs1450355 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . IRX3-90 NM_024336 exon2 c.T1265C p.L422P GGGTGCAGGCGGG . 5 5 0 0 T|0.035;G|0.004 1 0 1 0 0 CLEC18A 348174 ucsc.edu 37 16 69988260 69988260 + Silent SNP G G A rs74456876 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CLEC18A-68 NM_001271197 exon4 c.G240A p.Q80Q GGCCCAGCTGGCT . 220 61 112 21 G|0.500;A|0.500 0 0 0 0 0 MARVELD3 91862 ucsc.edu;bcgsc.ca 37 16 71674801 71674801 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MARVELD3-91 NM_001017967 exon3 c.G1104A p.V368V TCTCGTGATCATG . 361 157 259 2 . 1 0 1 0 0 ADAD2 161931 hgsc.bcm.edu 37 16 84224967 84224967 + Missense_Mutation SNP G G A rs8044695 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ADAD2-68 NM_001145400 exon1 c.G131A p.G44E CCTGGGGGCCCGC . 20 20 0 0 G|0.292;A|0.708 1 0 1 0 0 IRF8 3394 hgsc.bcm.edu 37 16 85952145 85952145 + Missense_Mutation SNP T T C rs142267779 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . IRF8-154 NM_002163 exon7 c.T724C p.Y242H AAGCTGTATGGGC . 65 21 0 0 T|0.998;C|0.002 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599696 88599697 + Frame_Shift_Del DEL GA GA - rs67549438 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZFPM1-90 NM_153813 exon10 c.1330_1331del p.444_444del AGAGCGGAGCCTC . 20 17 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599697 88599705 + In_Frame_Del DEL AGCCTCTGG AGCCTCTGG - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 AGCCTCTGG AGCCTCTGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZFPM1-90 NM_153813 exon10 c.1331_1339del p.444_447del GAGCGGAGCCTCT . 19 0 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599701 88599701 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZFPM1-90 NM_153813 exon10 c.1335delT p.P445fs GGAGCCTCTGGCC . 17 17 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599703 88599705 + In_Frame_Del DEL TGG TGG - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 TGG TGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZFPM1-90 NM_153813 exon10 c.1337_1339del p.446_447del AGCCTCTGGCCCA . 17 17 0 0 . 0 0 0 0 0 C17orf97 400566 hgsc.bcm.edu 37 17 260182 260182 + Silent SNP T T C rs7502594 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C17orf97-91 NM_001013672 exon1 c.T49C p.L17L CGCCGATTAGTCG . 21 18 2 0 T|0.657;C|0.343 0 0 0 0 0 GLTPD2 388323 hgsc.bcm.edu 37 17 4693342 4693342 + Missense_Mutation SNP C C A rs35910358 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GLTPD2-68 NM_001014985 exon4 c.C627A p.D209E CCCGGACGCGGGC . 10 10 0 0 C|0.015;A|0.985 1 0 1 0 0 TNFSF12 8742 hgsc.bcm.edu 37 17 7452542 7452542 + Silent SNP C C T rs77711855 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TNFSF12-44 NM_003809 exon1 c.C72T p.L24L CCCGCTCGCGCTG . 7 7 0 0 C|0.883;T|0.117 10 0 10 0 0 RNF222 643904 hgsc.bcm.edu 37 17 8296383 8296383 + Missense_Mutation SNP C C T rs12601362 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RNF222-68 NM_001146684 exon3 c.G397A p.A133T GCTGGGCGCTCTG . 12 10 0 0 C|0.808;T|0.192 0 0 0 0 0 SARM1 23098 hgsc.bcm.edu 37 17 26699121 26699121 + Missense_Mutation SNP G G C rs7212814 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_015077 exon1 c.G68C p.R23P CACGGCGGGGCGC . 7 7 0 0 G|0.001;C|0.999 1 0 1 0 0 MYO18A 399687 broad.mit.edu 37 17 27437604 27437604 + Silent SNP G G T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MYO18A-22 NM_078471 exon18 c.C2937A p.G979G GGCACTGCCTGCG . 43 8 11 0 . 3 3 0 0 0 TOP2A 7153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38561085 38561085 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TOP2A-655 NM_001067 exon17 c.C2004T p.F668F CTCCATGAAATTA . 98 38 81 0 . 6 6 0 0 0 IGFBP4 3487 hgsc.bcm.edu 37 17 38600092 38600092 + Silent SNP G G A rs598892 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . IGFBP4-522 NM_001552 exon1 c.G105A p.L35L GAAGCTGGCGCGC . 14 14 0 0 G|0.645;A|0.355 1 0 1 0 0 GOSR2 9570 broad.mit.edu;bcgsc.ca 37 17 45012394 45012394 + Splice_Site SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GOSR2-92 NM_004287 exon5 c.337-1G>A . TTCACAGGACTCT . 163 78 138 1 . 0 0 0 0 0 HID1 283987 bcgsc.ca 37 17 72949146 72949146 + Silent SNP C C T rs2307010 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_030630 exon16 c.G2007A p.P669P GGTGGACGGTCGC . 108 5 142 0 C|0.809;T|0.191 1 1 0 0 0 C1QTNF1 114897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 77043879 77043879 + Silent SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C1QTNF1-91 NM_030968 exon4 c.C555T p.F185F CAAGTTCTACTGC . 120 94 180 1 . 36 1 35 0 0 ROCK1 6093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 18629131 18629131 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ROCK1-1026 NM_005406 exon4 c.G336A p.M112I CTTTATCATTTCA . 58 20 63 0 . 2 2 0 0 0 CBLN2 147381 hgsc.bcm.edu 37 18 70209321 70209321 + Silent SNP C C A rs7237888 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CBLN2-90 NM_182511 exon3 c.G75T p.P25P GCCGCCCGGCTCG . 9 9 0 0 C|0.390;A|0.610 0 0 0 0 0 EFNA2 1943 hgsc.bcm.edu 37 19 1295717 1295717 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . EFNA2-90 NM_001405 exon2 c.G314A p.R105H ACCACCGCCAGCG . 95 6 10 0 . 0 0 0 0 0 TCF3 6929 hgsc.bcm.edu 37 19 1619339 1619339 + Silent SNP T T C rs8140 bycluster;byfrequency;byhapmap;by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TCF3-721 NM_003200 exon15 c.A1302G p.S434S GCCCAGTGACATG . 22 8 0 0 T|0.403;C|0.597 11 11 0 0 0 KANK3 256949 hgsc.bcm.edu 37 19 8399628 8399628 + Silent SNP A A G rs710949 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KANK3-90 NM_198471 exon3 c.T1083C p.S361S CTCCAGACTGGCG . 16 16 0 0 A|0.411;G|0.589 1 0 1 0 0 ZNF558 148156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8922403 8922403 + Missense_Mutation SNP T T C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZNF558-90 NM_144693 exon6 c.A763G p.K255E TCCTCTTGTGGCT . 151 65 135 0 . 7 6 1 0 0 CCDC105 126402 hgsc.bcm.edu 37 19 15133926 15133926 + Missense_Mutation SNP C C A rs8112667 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CCDC105-91 NM_173482 exon7 c.C1495A p.P499T GCGGACCCCTAGT . 40 19 1 0 C|0.671;A|0.329 0 0 0 0 0 CPAMD8 27151 bcgsc.ca 37 19 17111272 17111272 + Silent SNP T T C rs61740405 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CPAMD8-141 NM_015692 exon10 c.A960G p.V320V GTACCCTACACCA . 86 5 56 0 T|0.986;C|0.014 0 0 0 0 0 UQCRFS1 7386 hgsc.bcm.edu 37 19 29704002 29704002 + Silent SNP T T C rs11666764 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . UQCRFS1-226 NM_006003 exon1 c.A24G p.S8S CGGGCCTGAGCGG . 6 6 0 0 T|0.072;C|0.928 0 0 0 0 0 UQCRFS1 7386 hgsc.bcm.edu 37 19 29704010 29704010 + Missense_Mutation SNP A A C rs8100724 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . UQCRFS1-226 NM_006003 exon1 c.T16G p.S6A AGCGGGATGCTAC . 8 8 0 0 A|0.065;C|0.935 0 0 0 0 0 LSM14A 26065 broad.mit.edu 37 19 34710315 34710315 + Silent SNP T T G rs201741862 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LSM14A-91 NM_001114093 exon7 c.T801G p.A267A TTCAGCTCCAAGG . 72 3 62 0 T|0.999;G|0.001 18 17 1 0 0 FAM98C 147965 hgsc.bcm.edu 37 19 38894307 38894307 + Missense_Mutation SNP G G A rs150024474 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FAM98C-91 NM_174905 exon3 c.G322A p.E108K CTTCGGGAACCCG . 18 13 0 0 G|0.968;A|0.032 19 10 9 0 0 RINL 126432 hgsc.bcm.edu 37 19 39360720 39360720 + Missense_Mutation SNP G G A rs8110393 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RINL-91 NM_001195833 exon9 c.C1205T p.P402L GGGGCGGGGCTCT . 34 20 0 0 G|0.349;A|0.651 0 0 0 0 0 FBXO17 115290 hgsc.bcm.edu 37 19 39440918 39440918 + Silent SNP T T C rs2304117 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FBXO17-226 NM_148169 exon2 c.A69G p.P23P CAGGGATGGGTCC . 25 8 3 0 T|0.545;C|0.455 7 6 1 0 0 SPTBN4 57731 broad.mit.edu 37 19 40993664 40993664 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SPTBN4-94 NM_020971 exon3 c.G230A p.R77H TCGCCCGCGTGGG . 75 5 57 0 . 0 0 0 0 0 CYP2A6 1548 bcgsc.ca 37 19 41355820 41355820 + Silent SNP A A G rs199702575 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CYP2A6-92 NM_000762 exon2 c.T246C p.C82C ATGTCCACACAGC . 397 18 282 10 A|0.999;G|0.001 0 0 0 0 0 CYP2A6 1548 bcgsc.ca 37 19 41355828 41355828 + Missense_Mutation SNP C C T rs77233796 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CYP2A6-92 NM_000762 exon2 c.G238A p.V80M ACAGCACCACGAC . 383 20 278 11 . 0 0 0 0 0 ERCC2 2068 hgsc.bcm.edu 37 19 45867259 45867259 + Missense_Mutation SNP C C T rs1799793 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ERCC2-848 NM_000400 exon10 c.G934A p.D312N CTTCGTCGGGCAG . 27 12 0 0 C|0.804;T|0.196 6 2 4 0 0 NTF4 4909 ucsc.edu 37 19 49565034 49565034 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . NTF4-68 NM_006179 exon2 c.C221T p.P74L TTGGCCGGGGCAC . 43 5 17 0 . 0 0 0 0 0 ASPDH 554235 hgsc.bcm.edu 37 19 51015404 51015404 + Missense_Mutation SNP T T C rs12977172 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ASPDH-90 NM_001114598 exon6 c.A797G p.Q266R AGGCTCTGCCAGA . 11 11 0 0 T|0.228;C|0.772 0 0 0 0 0 ZNF880 400713 broad.mit.edu 37 19 52888210 52888210 + Silent SNP T T C rs56151179 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001145434 exon4 c.T1377C p.T459T TCATACTGGAGAG . 97 4 86 0 T|0.632;C|0.368 1 0 1 0 0 ZNF880 400713 broad.mit.edu 37 19 52888245 52888245 + Missense_Mutation SNP A A G rs55748277 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001145434 exon4 c.A1412G p.K471R GTGGCAAGGACTT . 136 4 111 1 A|0.631;G|0.369 0 0 0 0 0 UBE2S 27338 hgsc.bcm.edu 37 19 55912946 55912946 + Missense_Mutation SNP T T G rs61748180 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . UBE2S-226 NM_014501 exon4 c.A527C p.E176A GAAGCTTCAGTGC . 30 16 2 0 T|0.951;G|0.049 135 59 76 0 0 ZNF814 730051 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58385748 58385748 + Missense_Mutation SNP G G A rs145250945 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001144989 exon3 c.C1010T p.A337V AAGCTAGCATATT . 267 105 114 1 . 1 1 0 0 0 ZNF814 730051 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58385762 58385762 + Silent SNP C C G rs199732634 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001144989 exon3 c.G996C p.S332S GCTAAACGATTTC . 238 73 101 1 . 1 1 0 0 0 ZNF814 730051 bcgsc.ca 37 19 58385873 58385873 + Silent SNP T T C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001144989 exon3 c.A885G p.K295K TTCATGTTTTTTT . 41 9 126 6 . 0 0 0 0 0 TPO 7173 hgsc.bcm.edu 37 2 1481231 1481231 + Missense_Mutation SNP G G C rs2175977 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TPO-332 NM_175719 exon8 c.G1193C p.S398T GCGCCAGCGAGGT . 15 15 0 0 G|0.301;C|0.699 0 0 0 0 0 CMPK2 129607 hgsc.bcm.edu 37 2 7005369 7005369 + Silent SNP A A G rs11678810 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CMPK2-68 NM_001256478 exon1 c.T459C p.C153C CTCCTGACAGGCG . 10 10 0 0 A|0.003;G|0.997 0 0 0 0 0 CRIM1 51232 hgsc.bcm.edu 37 2 36583461 36583461 + Missense_Mutation SNP G G T rs3821169 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CRIM1-118 NM_016441 exon1 c.G26T p.G9V ACAGGGGGTTGGC . 24 12 1 0 G|0.927;T|0.073 0 0 0 0 0 ADD2 119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 70933534 70933534 + Missense_Mutation SNP C C T rs200519011 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ADD2-93 NM_001185055 exon2 c.G55A p.E19K TCTCTTCGCTCAT . 41 18 17 0 C|0.999;T|0.000 0 0 0 0 0 C2orf81 388963 broad.mit.edu 37 2 74642280 74642280 + Missense_Mutation SNP T T G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001145054 exon4 c.A943C p.T315P GGCGGGTGGCGCC . 133 44 34 8 . 3 2 1 0 0 ATOH8 84913 hgsc.bcm.edu 37 2 85981761 85981761 + Missense_Mutation SNP T T C rs17851881 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ATOH8-90 NM_032827 exon1 c.T449C p.L150P CGGGTCTGCGTCC . 11 4 0 0 T|0.382;C|0.618 0 0 0 0 0 LYG2 254773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99860495 99860495 + Missense_Mutation SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LYG2-91 NM_175735 exon5 c.T487C p.F163L TGGGGAATTTTTT . 90 48 92 0 . 0 0 0 0 0 XIRP2 129446 broad.mit.edu;bcgsc.ca 37 2 168100197 168100197 + Silent SNP A A T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . XIRP2-104 NM_152381 exon9 c.A2295T p.G765G AAAGGGAGATGTA . 193 7 236 0 . 0 0 0 0 0 CTLA4 1493 bcgsc.ca 37 2 204732714 204732714 + Missense_Mutation SNP A A G rs231775 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CTLA4-90 NM_005214 exon1 c.A49G p.T17A CTGGCTACCAGGA . 120 5 124 0 A|0.591;G|0.409 0 0 0 0 0 TCF15 6939 hgsc.bcm.edu 37 20 590456 590456 + Silent SNP A A G rs282164 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TCF15-90 NM_004609 exon1 c.T426C p.R142R CGCGGCACGGAAG . 8 8 0 0 A|0.165;G|0.835 0 0 0 0 0 PANK2 80025 hgsc.bcm.edu 37 20 3870124 3870124 + Missense_Mutation SNP G G C rs3737084 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PANK2-115 NM_153638 exon1 c.G377C p.G126A TGGGAGGGGGCCG . 4 4 0 0 G|0.122;C|0.878 1 0 1 0 0 LRRN4 164312 hgsc.bcm.edu 37 20 6033033 6033033 + Missense_Mutation SNP G G A rs6107751 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LRRN4-93 NM_152611 exon2 c.C413T p.P138L CACGGCGGCAGAG . 5 5 0 0 G|0.864;A|0.136 0 0 0 0 0 ACTR5 79913 hgsc.bcm.edu 37 20 37377139 37377139 + Silent SNP C C T rs2254105 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ACTR5-90 NM_024855 exon1 c.C18T p.F6F CGTGTTCCCGTTC . 39 37 0 0 C|0.769;T|0.231 0 0 0 0 0 SLC35C2 51006 hgsc.bcm.edu;bcgsc.ca 37 20 44979124 44979131 + Frame_Shift_Del DEL CTGGAGCC CTGGAGCC - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 CTGGAGCC CTGGAGCC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SLC35C2-91 NM_173179 exon10 c.1000_1007del p.334_336del TCGGGGCTGGAGC . 105 81 110 1 . 0 0 0 0 0 TMEM189 387521 hgsc.bcm.edu 37 20 48770159 48770159 + Missense_Mutation SNP T T C rs232733 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TMEM189-22 NM_199129 exon1 c.A16G p.N6D GCCAGTTCTCGGC . 19 19 0 0 C|0.999;T|0.001 22 0 22 0 0 CLIC6 54102 hgsc.bcm.edu 37 21 36041978 36041978 + Silent SNP A A G rs7280973 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CLIC6-91 NM_053277 exon1 c.A291G p.Q97Q GCCCCAAGGAGGG . 4 4 0 0 A|0.001;G|0.999 0 0 0 0 0 COL18A1 80781 hgsc.bcm.edu 37 21 46924425 46924425 + Silent SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . COL18A1-90 NM_030582 exon33 c.C3363A p.P1121P CCCCCCCGGCCCC . 27 7 12 0 . 1 1 0 0 0 TRIOBP 11078 hgsc.bcm.edu 37 22 38122462 38122462 + Missense_Mutation SNP A A G rs739138 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TRIOBP-136 NM_001039141 exon7 c.A3899G p.H1300R GCACCCACAGCCC . 20 10 0 0 A|0.354;G|0.646 1 1 0 0 0 C22orf26 55267 hgsc.bcm.edu 37 22 46449891 46449891 + Missense_Mutation SNP G G A rs12159707 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C22orf26-90 NM_018280 exon1 c.C83T p.P28L GGGTTGGGGGGGG . 9 5 0 0 A|0.248;C|0.000;G|0.752 5 3 2 0 0 RBMS3 27303 broad.mit.edu;ucsc.edu 37 3 30029712 30029712 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RBMS3-90 NM_001003793 exon13 c.G1177A p.E393K TCTATTGAAGTAA . 59 10 53 1 . 0 0 0 0 0 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266103 41266103 + Missense_Mutation SNP G G C rs121913399 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CTNNB1-24361 NM_001098209 exon3 c.G100C p.G34R GACTCTGGAATCC . 265 59 185 0 . 150 114 36 0 0 LYZL4 131375 broad.mit.edu 37 3 42448455 42448455 + Missense_Mutation SNP G G A rs76947105 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LYZL4-90 NM_144634 exon3 c.C175T p.P59S CCATGGGGTTGAA . 240 4 169 0 G|0.997;A|0.003 0 0 0 0 0 ARHGEF3 50650 bcgsc.ca 37 3 56835761 56835761 + Silent SNP G G A rs3732508 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ARHGEF3-228 NM_019555 exon1 c.C66T p.P22P GGCCGGGGGTAGC . 215 7 127 1 G|0.677;A|0.323 9 9 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550756 66550756 + Missense_Mutation SNP G G C rs1403625 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LRIG1-230 NM_015541 exon1 c.C76G p.L26V GCCGAAGCAAAAG . 8 8 0 0 G|0.237;C|0.763 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 10 10 0 0 G|0.252;C|0.748 0 0 0 0 0 SEMA5B 54437 hgsc.bcm.edu 37 3 122631896 122631896 + Missense_Mutation SNP A A T rs2276782 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SEMA5B-157 NM_001256347 exon18 c.T2681A p.V894D AGGAGGACCTCCA . 18 18 1 0 T|0.412;A|0.588 0 0 0 0 0 ADCY5 111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 123010075 123010075 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ADCY5-94 NM_183357 exon18 c.C3212T p.A1071V ATGACCGCCACAC . 566 334 379 0 . 0 0 0 0 0 MUC4 4585 broad.mit.edu 37 3 195508940 195508940 + Missense_Mutation SNP C C G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MUC4-90 NM_018406 exon2 c.G9511C p.V3171L TGGTGACAGGAAG . 371 12 254 0 . 0 0 0 0 0 TNK2 10188 hgsc.bcm.edu 37 3 195595405 195595405 + Silent SNP G G A rs1056726 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TNK2-957 NM_001010938 exon13 c.C1953T p.F651F CTCACCGAAGTCG . 10 10 2 0 G|0.936;A|0.064 5 0 5 0 0 RNF212 285498 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 1107223 1107223 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RNF212-68 NM_194439 exon1 c.C30T p.C10C CTGGAAGCAGCGA . 212 67 90 1 . 0 0 0 0 0 CRIPAK 285464 hgsc.bcm.edu 37 4 1388726 1388726 + Missense_Mutation SNP T T C rs199689156 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CRIPAK-90 NM_175918 exon1 c.T427C p.C143R TGCCCATGCGGAG . 137 13 11 0 T|0.980;C|0.020 9 9 0 0 0 CRIPAK 285464 bcgsc.ca 37 4 1389005 1389005 + Missense_Mutation SNP T T C rs71614970 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CRIPAK-90 NM_175918 exon1 c.T706C p.C236R TGCCGATGCGGAG . 102 34 17 0 C|1.000;|0.000 27 15 12 0 0 MSANTD1 345222 hgsc.bcm.edu 37 4 3251006 3251006 + Silent SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001042690 exon1 c.C57T p.G19G CACAGGCGCCTCC . 14 9 0 0 . 0 0 0 0 0 DOK7 285489 hgsc.bcm.edu 37 4 3495095 3495095 + Missense_Mutation SNP G G A rs9684786 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . DOK7-91 NM_173660 exon7 c.G1382A p.G461D CCCAGGGCAGCGA . 40 26 1 0 G|0.834;A|0.166 0 0 0 0 0 OTOP1 133060 broad.mit.edu 37 4 4228274 4228282 + In_Frame_Del DEL CCACAGCAG CCACAGCAG - rs75328065 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . OTOP1-92 NM_177998 exon1 c.310_318del p.104_106del CAGCATCCACAGC . 78 16 5 0 . 0 0 0 0 0 CRMP1 1400 hgsc.bcm.edu 37 4 5894586 5894586 + Silent SNP G G A rs143304363 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CRMP1-92 NM_001014809 exon1 c.C111T p.A37A CACCGCGGCGAAC . 18 16 0 0 G|0.946;A|0.054 0 0 0 0 0 CCDC96 257236 hgsc.bcm.edu 37 4 7044357 7044357 + Silent SNP A A G rs871133 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CCDC96-90 NM_153376 exon1 c.T309C p.V103V AGCCCCAACCTCG . 6 6 0 0 A|0.036;G|0.964 0 0 0 0 0 CCDC96 257236 hgsc.bcm.edu 37 4 7044380 7044380 + Missense_Mutation SNP C C T rs871134 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CCDC96-90 NM_153376 exon1 c.G286A p.E96K CGGGCTCGGGCTG . 8 8 0 0 C|0.472;T|0.528 3 0 3 0 0 CPZ 8532 broad.mit.edu 37 4 8605757 8605757 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CPZ-93 NM_001014447 exon4 c.G551A p.R184H TCATCCGCTTCAG . 92 3 24 0 . 0 0 0 0 0 C1QTNF7 114905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15444216 15444216 + Silent SNP C C T rs140722077 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . C1QTNF7-90 NM_001135170 exon3 c.C684T p.F228F GACCTTCGACGCC . 90 48 69 0 C|0.999;T|0.001 0 0 0 0 0 RBM47 54502 hgsc.bcm.edu 37 4 40440854 40440854 + Silent SNP G G C rs1052153 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . RBM47-25 NM_001098634 exon4 c.C57G p.S19S CTTGGCGGAGGAC . 8 8 0 0 G|0.794;C|0.206 5 0 5 0 0 ZAR1 326340 hgsc.bcm.edu 37 4 48492434 48492434 + Missense_Mutation SNP G G C rs10008444 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZAR1-90 NM_175619 exon1 c.G126C p.Q42H GCAGCAGCGCGGC . 20 20 0 0 G|0.025;C|0.975 0 0 0 0 0 LOC550113 0 bcgsc.ca 37 4 68928722 68928722 + RNA SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . . . . . TTCACTACAAGAC . 87 4 103 0 . 0 0 0 0 0 SHROOM3 57619 hgsc.bcm.edu 37 4 77662248 77662248 + Silent SNP G G A rs60216375 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SHROOM3-93 NM_020859 exon5 c.G2922A p.S974S GGCGTCGGCCTCC . 6 6 0 0 G|0.531;A|0.469 2 0 2 0 0 SHROOM3 57619 hgsc.bcm.edu 37 4 77662309 77662309 + Silent SNP C C T rs344143 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SHROOM3-93 NM_020859 exon5 c.C2983T p.L995L GGCGACCTGGCCA . 18 18 0 0 C|0.604;T|0.396 2 0 2 0 0 SOWAHB 345079 hgsc.bcm.edu 37 4 77818202 77818202 + Silent SNP T T C rs2645674 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001029870 exon1 c.A801G p.T267T CCTGCTTGTCGCA . 15 6 0 0 T|0.691;C|0.309 0 0 0 0 0 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 80328985 80328985 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . GK2-94 NM_033214 exon1 c.G370A p.E124K GATCCTCAACAGT . 156 43 170 0 . 0 0 0 0 0 COQ2 27235 hgsc.bcm.edu 37 4 84205872 84205872 + Missense_Mutation SNP C C A rs6818847 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . COQ2-92 NM_015697 exon1 c.G196T p.V66L GTGCCACAGCCCG . 13 13 0 0 C|0.324;A|0.676 0 0 0 0 0 UNC5C 8633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 96163681 96163681 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . UNC5C-94 NM_003728 exon7 c.G1007A p.R336H CTCCTGCGCCAGT . 141 89 130 0 . 1 0 1 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 126367514 126367514 + Silent SNP C C T rs147010455 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FAT4-108 NM_024582 exon8 c.C7260T p.S2420S CACCAGCGCATTG . 132 30 148 0 C|0.999;T|0.001 0 0 0 0 0 LRBA 987 broad.mit.edu 37 4 151769988 151769988 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LRBA-157 NM_006726 exon26 c.C4321T p.R1441W ACTGCCGCAAAAT . 143 3 118 0 . 2 2 0 0 0 TLR2 7097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 154624343 154624343 + Missense_Mutation SNP C C G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TLR2-523 NM_003264 exon3 c.C284G p.S95C AAGATTCTTTTTC . 154 54 168 0 . 0 0 0 0 0 MAP9 79884 ucsc.edu;bcgsc.ca 37 4 156273768 156273768 + Missense_Mutation SNP T T C rs2305050 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MAP9-91 NM_001039580 exon13 c.A1801G p.N601D ATTCATTAATAGC . 42 5 32 0 T|0.372;C|0.628 2 2 0 0 0 ADAMTS16 170690 hgsc.bcm.edu 37 5 5140632 5140632 + Silent SNP T T C rs270208 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ADAMTS16-275 NM_139056 exon1 c.T52C p.L18L ATGCTGTTGGCGC . 7 6 0 0 T|0.352;C|0.648 0 0 0 0 0 MYO10 4651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 16701501 16701501 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MYO10-3 NM_012334 exon25 c.C3003T p.D1001D GGCGTCGTCGTCG . 135 53 91 0 . 0 0 0 0 0 SLC1A3 6507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 36671233 36671233 + Missense_Mutation SNP T T C novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SLC1A3-90 NM_004172 exon4 c.T422C p.I141T TAATCATTGTCAT . 347 135 224 0 . 10 3 7 0 0 SNX18 112574 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 53815125 53815125 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SNX18-226 NM_052870 exon1 c.C1343T p.T448M ACCACACGGCCAA . 482 69 265 2 . 23 21 2 0 0 SV2C 22987 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 75594617 75594617 + Splice_Site SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SV2C-91 NM_014979 exon10 c.1503-2A>G . TTGGGCAGATTCA . 131 50 109 1 . 0 0 0 0 0 HSPA9 3313 broad.mit.edu 37 5 137909456 137909456 + Missense_Mutation SNP G G T rs201580482 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . HSPA9-226 NM_004134 exon3 c.C224A p.A75E ACCTTTGCTTGTT . 57 5 92 1 G|0.999;C|0.001 0 0 0 0 0 PCDHB7 56129 broad.mit.edu 37 5 140553994 140553994 + Silent SNP G G T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PCDHB7-95 NM_018940 exon1 c.G1578T p.A526A GCAGGCGTTCGAG . 268 8 79 0 . 2 0 2 0 0 B4GALT7 11285 hgsc.bcm.edu 37 5 177036622 177036622 + Missense_Mutation SNP G G A rs145082497 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . B4GALT7-91 NM_007255 exon6 c.G910A p.G304R GTGGGCGGGGCCC . 558 37 168 0 G|0.999;A|0.001 110 110 0 0 0 BTNL9 153579 hgsc.bcm.edu 37 5 180486404 180486404 + Missense_Mutation SNP C C T rs186444058 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . BTNL9-91 NM_152547 exon11 c.C1150T p.H384Y GGCCGCCACTACT . 22 14 0 0 C|0.983;T|0.017 1 1 0 0 0 FOXQ1 94234 hgsc.bcm.edu 37 6 1313117 1313117 + Missense_Mutation SNP A A C rs9502889 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FOXQ1-226 NM_033260 exon1 c.A178C p.T60P AGAGATACGCAGG . 4 4 0 0 A|0.161;C|0.839 0 0 0 0 0 FOXQ1 94234 hgsc.bcm.edu 37 6 1313121 1313121 + Missense_Mutation SNP A A C rs9502890 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FOXQ1-226 NM_033260 exon1 c.A182C p.Q61P ATACGCAGGGCGA . 4 4 0 0 A|0.173;C|0.827 0 0 0 0 0 PPP1R3G 648791 hgsc.bcm.edu 37 6 5086211 5086211 + Silent SNP G G C rs584962 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PPP1R3G-136 NM_001145115 exon1 c.G492C p.L164L GCGCCTGCGAAGC . 8 8 0 0 G|0.000;C|1.000 7 0 7 0 0 ZNF391 346157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27368446 27368446 + Silent SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ZNF391-69 NM_001076781 exon3 c.C297T p.H99H TAAACACCAAAGA . 77 43 69 0 . 0 0 0 0 0 FGD2 221472 broad.mit.edu 37 6 36993620 36993620 + Missense_Mutation SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FGD2-229 NM_173558 exon14 c.A1511G p.N504S ACGACAACAGGCC . 298 6 149 0 . 1 1 0 0 0 FAM46A 55603 hgsc.bcm.edu 37 6 82461742 82461742 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FAM46A-90 NM_017633 exon2 c.C117T p.G39G GTCGCCGCCGCCG . 100 14 19 0 . 16 16 0 0 0 POU3F2 5454 hgsc.bcm.edu 37 6 99283376 99283376 + Silent SNP T T G rs195860 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . POU3F2-90 NM_005604 exon1 c.T627G p.G209G GGCCGGTCTGCAC . 34 34 0 0 T|0.089;G|0.911 0 0 0 0 0 SEC63 11231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 108194052 108194052 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . SEC63-227 NM_007214 exon20 c.C2099A p.S700X GAGTCTGATCTCA . 153 78 174 0 . 72 31 41 0 0 PEX7 5191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 137193359 137193359 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PEX7-90 NM_000288 exon8 c.G771A p.V257V TTCTGTGCTGGCC . 33 9 33 0 . 19 7 12 0 0 ADGB 79747 broad.mit.edu 37 6 147106841 147106841 + Silent SNP A A G rs259391 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_024694 exon32 c.A4308G p.K1436K ACCAAAAGAAGAA . 115 3 103 0 A|0.449;G|0.551 0 0 0 0 0 LRP11 84918 hgsc.bcm.edu 37 6 150184882 150184882 + Missense_Mutation SNP G G C rs9322225 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . LRP11-90 NM_032832 exon1 c.C275G p.P92R CTGCCCGGGCCCG . 7 6 0 0 G|0.492;C|0.508 6 4 2 0 0 ARID1B 57492 hgsc.bcm.edu 37 6 157099799 157099799 + Missense_Mutation SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ARID1B-154 NM_017519 exon1 c.G736A p.G246S CCCGGCGGCCGCG . 20 9 1 0 . 1 1 0 0 0 TBP 6908 bcgsc.ca 37 6 170871052 170871052 + Silent SNP G G A rs112083427 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TBP-91 NM_003194 exon3 c.G228A p.Q76Q ACAGCAGCAGCAG . 82 7 63 7 G|0.500;A|0.500 333 324 8 0 1 TNRC18 84629 hgsc.bcm.edu 37 7 5372406 5372406 + Silent SNP G G T rs13238738 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TNRC18-46 NM_001080495 exon19 c.C5994A p.R1998R CTCGCTGCGGCGC . 9 9 0 0 G|0.411;T|0.589 0 0 0 0 0 DNAH11 8701 bcgsc.ca 37 7 21675643 21675643 + Missense_Mutation SNP G G T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . DNAH11-146 . . . . TTGTCTGTTCAGA . 184 78 155 3 . 0 0 0 0 0 DOCK4 9732 hgsc.bcm.edu 37 7 111368454 111368454 + Missense_Mutation SNP G G A rs34597439 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . DOCK4-26 NM_014705 exon52 c.C5777T p.S1926L GGCTCCGACGTGA . 23 12 1 0 G|0.979;A|0.021 2 0 2 0 0 CADPS2 93664 broad.mit.edu 37 7 122526225 122526225 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CADPS2-94 NM_001167940 exon1 c.167delC p.S56fs CTCACAGATCTGG . 39 14 10 0 . 0 0 0 0 0 ARHGEF5 7984 bcgsc.ca 37 7 144070294 144070294 + Missense_Mutation SNP C C T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ARHGEF5-229 NM_005435 exon10 c.C4057T p.R1353W CTGATCCGGGACT . 1518 429 1088 4 . 0 0 0 0 0 ASIC3 9311 broad.mit.edu 37 7 150746080 150746080 + Silent SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_020322 exon1 c.C108A p.G36G GCCAGGCAGCCTG . 139 11 21 2 . 1 1 0 0 0 AGAP3 116988 broad.mit.edu 37 7 150835296 150835296 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . AGAP3-92 NM_031946 exon12 c.C1562A p.A521D CCTGGGCTGGCCC . 113 6 17 1 . 18 18 0 0 0 REEP4 80346 broad.mit.edu 37 8 21996554 21996554 + Silent SNP G G T novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . REEP4-91 NM_025232 exon6 c.C438A p.G146G CAGCCTGCCGGCC . 37 7 33 0 . 41 41 0 0 0 TACC1 6867 bcgsc.ca 37 8 38677932 38677932 + Silent SNP A A G rs2013586 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TACC1-187 NM_006283 exon3 c.A1170G p.E390E GTGGGAAAGCCCC . 104 5 93 0 A|0.696;G|0.304 10 10 0 0 0 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 72981348 72981348 + Silent SNP G G T rs146503939 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TRPA1-230 NM_007332 exon3 c.C354A p.L118L TCTGCTGAGAAGA . 90 40 79 0 G|1.000;C|0.000 0 0 0 0 0 E2F5 1875 hgsc.bcm.edu 37 8 86089787 86089787 + Silent SNP C C G rs12926 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . E2F5-415 NM_001083588 exon1 c.C132G p.A44A GGGCGCCGGGGGC . 10 5 0 0 C|0.434;G|0.566 2 2 0 0 0 MROH6 642475 hgsc.bcm.edu 37 8 144649601 144649601 + Silent SNP A A G rs13268196 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001100878 exon14 c.T1968C p.A656A GGCCACAGCCGGC . 9 9 0 0 A|0.057;G|0.943 11 0 11 0 0 MROH6 642475 hgsc.bcm.edu 37 8 144649625 144649625 + Silent SNP T T C rs10097556 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001100878 exon14 c.A1944G p.R648R CTGCAGTCGCCCT . 17 17 0 0 T|0.058;C|0.942 0 0 0 0 0 ERMP1 79956 hgsc.bcm.edu 37 9 5832728 5832728 + Silent SNP G G C rs1131727 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . ERMP1-69 NM_024896 exon1 c.C300G p.A100A TCCAGCGGCCCCG . 21 20 0 0 G|0.572;C|0.428 0 0 0 0 0 IL33 90865 bcgsc.ca 37 9 6241723 6241723 + Missense_Mutation SNP A A G novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . IL33-90 NM_001199640 exon2 c.A29G p.N10S CAACCAACAAAAT . 90 4 157 0 . 0 0 0 0 0 PTPRD 5789 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 8376721 8376721 + Missense_Mutation SNP C C A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PTPRD-912 NM_002839 exon38 c.G4392T p.K1464N GTCACACTTCACC . 87 31 119 1 . 0 0 0 0 0 PSIP1 11168 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 15478495 15478495 + Silent SNP G G A novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . PSIP1-658 NM_021144 exon7 c.C609T p.P203P AGGACAGGGCTGT . 186 12 301 0 . 44 40 4 0 0 AKAP2 11217 hgsc.bcm.edu 37 9 112811038 112811038 + Missense_Mutation SNP C C T rs78923754 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . AKAP2-24 NM_001004065 exon1 c.C59T p.P20L GACCCCCGGAGTC . 17 9 1 0 C|0.917;T|0.083 1 1 0 0 0 CRB2 286204 hgsc.bcm.edu 37 9 126135831 126135831 + Silent SNP T T C rs7848449 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CRB2-91 NM_173689 exon10 c.T3021C p.A1007A GCTGGCTGAGAAC . 13 13 0 0 T|0.886;C|0.114 0 0 0 0 0 GPR144 347088 hgsc.bcm.edu 37 9 127215430 127215430 + Missense_Mutation SNP G G C rs184300525 by1000genomes TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001161808 exon4 c.G454C p.D152H CAGTGGGACTGTG . 36 13 0 0 G|0.991;C|0.009 0 0 0 0 0 FPGS 2356 hgsc.bcm.edu 37 9 130565267 130565267 + Missense_Mutation SNP A A G rs10760502 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . FPGS-90 NM_004957 exon1 c.A64G p.I22V CGCGGCATAACGA . 12 12 0 0 A|0.235;G|0.765 0 0 0 0 0 WDR34 89891 hgsc.bcm.edu 37 9 131418828 131418828 + Missense_Mutation SNP A A C rs4837292 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . WDR34-92 NM_052844 exon1 c.T178G p.W60G TCTCCCAGCGGAT . 4 4 0 0 A|0.006;C|0.994 0 0 0 0 0 CXorf58 254158 bcgsc.ca 37 X 23933912 23933912 + Splice_Site SNP G G A rs62584865 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . CXorf58-130 NM_001169574 exon4 c.311+1G>A . ATTCAGGTAATGT . 193 9 186 0 G|0.991;A|0.009 0 0 0 0 0 SOWAHD 347454 hgsc.bcm.edu 37 X 118892888 118892888 + Silent SNP G G C rs2782222 byfrequency TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . . NM_001105576 exon1 c.G258C p.A86A TCCTGCGGGGTGG . 6 4 0 0 G|0.401;C|0.599 3 0 3 0 0 KRTAP5-5 439915 hgsc.bcm.edu 37 11 1651199 1651200 + In_Frame_Ins INS - - GGCTGTGGCTCC novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KRTAP5-5-23 NM_001001480 exon1 c.129_130insGGCTGTGGCTCC p.G43delinsGGCGS CTGTGGAGGCTGT . 83 22 29 0 . 0 0 0 0 0 POLG 5428 broad.mit.edu 37 15 89876827 89876828 + In_Frame_Ins INS - - TGC rs41550117 bycluster TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . POLG-228 NM_001126131 exon2 c.159_160insGCA p.Q53delinsQQ CTGCTGTTGCTGC . 35 10 11 0 . 0 0 0 0 0 BCR 613 broad.mit.edu 37 22 23653975 23653976 + Frame_Shift_Ins INS - - CCGG novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . BCR-1349 NM_004327 exon19 c.3274_3275insCCGG p.S1092fs CGCGTGTCCGGTG . 757 16 459 6 . 0 0 0 0 0 MN1 4330 hgsc.bcm.edu 37 22 28194933 28194934 + In_Frame_Ins INS - - TGCTGC rs75719175 alternate_allele TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . MN1-993 NM_002430 exon1 c.1599_1600insGCAGCA p.Q533delinsQQQ CTGCTGTTGCTGC . 99 38 13 0 . 0 0 0 0 0 TTLL11 158135 broad.mit.edu 37 9 124855330 124855331 + In_Frame_Ins INS - - TGGCCT rs201653732 TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . TTLL11-112 NM_001139442 exon1 c.368_369insAGGCCA p.T123delinsKAT TCCGCTGTGGCCT . 17 7 4 0 -|0.843;TGGCCT|0.157 0 0 0 0 0 KNDC1 85442 hgsc.bcm.edu 37 10 135012429 135012430 + Missense_Mutation DNP TT TT AC novel TCGA-OR-A5JS-01A-11D-A29I-10 TCGA-OR-A5JS-10A-01D-A29L-10 TT TT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 95b96221-95bf-40b5-8c9b-c79910e62b7e 959e8880-50f1-4d05-b574-fd92ffa11704 . KNDC1-229 NM_152643 exon14 c.T2418C p.V806D TGGAGTTGCTTCC . 14 0 0 0 T|0.470;C|0.530 0 0 0 0 0