Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	10	10	0	0	A|0.047;C|0.953	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NOL9-515	NM_024654	exon1	c.T148C	p.W50R	ACCGCCACCGTAG	.	6	6	0	0	A|0.020;G|0.980	0	0	0	0	0
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17318535	17318535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATP13A2-93	NM_022089	exon19	c.C2095T	p.P699S	GGCTGGGCACAGT	.	191	173	254	1	.	48	1	47	0	0
FUCA1	2517	hgsc.bcm.edu	37	1	24194773	24194773	+	Missense_Mutation	SNP	G	G	A	rs2070955	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FUCA1-153	NM_000147	exon1	c.C4T	p.R2W	GAGCCCGCATCGC	.	25	22	2	0	G|0.874;A|0.126	0	0	0	0	0
CATSPER4	378807	bcgsc.ca	37	1	26527951	26527951	+	Missense_Mutation	SNP	G	G	A	rs6657616	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CATSPER4-91	NM_198137	exon9	c.G1306A	p.D436N	TCCAAGGACATCC	.	314	11	414	5	G|0.743;A|0.257	0	0	0	0	0
EFCAB14	9813	ucsc.edu	37	1	47149061	47149061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_014774	exon10	c.T1223C	p.L408S	TTTGGCAATGCTG	.	46	4	38	0	.	19	19	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	11	5	0	0	G|0.680;C|0.320	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	13	13	0	0	T|0.073;G|0.921	4	0	4	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	12	12	0	0	T|0.229;C|0.771	1	0	1	0	0
USH2A	7399	ucsc.edu	37	1	215956274	215956274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	USH2A-115	NM_206933	exon53	c.T10391A	p.V3464E	AGGTTCACATCTG	.	38	4	41	0	.	0	0	0	0	0
C1orf229	388759	hgsc.bcm.edu	37	1	247275218	247275218	+	Silent	SNP	C	C	G	rs141557009		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	C1orf229-90	NM_207401	exon1	c.G309C	p.A103A	CGAGGCCGCAGCG	.	66	65	1	0	C|0.971;G|0.029	0	0	0	0	0
FAM35BP	414241	bcgsc.ca;mdanderson.org	37	10	46934806	46934806	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	.	.	.	.	AGACATAATGTTT	.	49	48	78	0	.	2	0	2	0	0
CDH23	64072	bcgsc.ca	37	10	73270906	73270906	+	Silent	SNP	T	T	C	rs3802720	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CDH23-563	NM_052836	exon6	c.T366C	p.V122V	CCAGGTTGGGGAT	.	91	5	189	0	T|0.244;C|0.756	0	0	0	0	0
MIR608	693193	ucsc.edu;bcgsc.ca	37	10	102734778	102734778	+	RNA	SNP	C	C	G	rs4919510	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	.	.	.	.	ACAGCTCCGTTTA	.	38	8	31	0	C|0.660;G|0.340	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	11	11	0	0	A|0.009;G|0.991	0	0	0	0	0
CUEDC2	79004	broad.mit.edu;bcgsc.ca	37	10	104183193	104183193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CUEDC2-90	NM_024040	exon9	c.G854A	p.R285H	TGGAAGCGGTACT	.	174	8	257	0	.	120	119	0	0	1
COL17A1	1308	broad.mit.edu	37	10	105816838	105816838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	COL17A1-95	NM_000494	exon17	c.G1360T	p.A454S	ACCAGGCTGGCGC	.	135	6	28	0	.	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu	37	10	129899793	129899793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MKI67-519	NM_002417	exon14	c.C9434A	p.P3145H	TCTCTAGGTATGG	.	68	4	109	0	.	21	21	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	7	7	0	0	C|0.431;G|0.569	5	0	5	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	83	45	188	1	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	87	35	216	2	C|1.000;|0.000	0	0	0	0	0
WEE1	7465	hgsc.bcm.edu	37	11	9595897	9595897	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	WEE1-1404	NM_003390	exon1	c.G417T	p.S139S	TTTCTCGCCGGTG	.	17	4	5	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	13	13	0	0	G|0.005;C|0.995	27	0	27	0	0
KRTAP5-7	440050	bcgsc.ca	37	11	71238685	71238685	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KRTAP5-7-68	NM_001012503	exon1	c.G339A	p.Q113Q	CTGCCAGTCCAGC	.	100	7	169	4	.	0	0	0	0	0
GRIN2B	2904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13717131	13717131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GRIN2B-231	NM_000834	exon13	c.A3041T	p.Q1014L	CTGGACTGGGTGG	.	286	107	217	1	.	0	0	0	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21960411	21960411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ABCC9-96	NM_005691	exon36	c.G4318A	p.A1440T	CAACCGCATCTAA	.	88	49	59	0	.	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	22	22	0	0	A|0.133;G|0.867	0	0	0	0	0
KRT2	3849	ucsc.edu	37	12	53045615	53045615	+	Silent	SNP	A	A	G	rs75253159	bycluster;byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KRT2-92	NM_000423	exon1	c.T312C	p.G104G	GCTGCCACCTCCA	.	162	36	121	2	A|0.961;G|0.039	0	0	0	0	0
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69233423	69233423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MDM2-1270	NM_002392	exon11	c.G1288C	p.E430Q	AAAGAAGAGAGTG	.	367	183	309	0	.	2	1	1	0	0
STAB2	55576	hgsc.bcm.edu	37	12	104025393	104025453	+	Frame_Shift_Del	DEL	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	STAB2-104	NM_017564	exon6	c.505_565del	p.169_189del	GTGCATGGGGTGT	.	158	0	159	0	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	9	9	0	0	G|0.588;C|0.412	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124821523	124821523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NCOR2-229	NM_006312	exon40	c.C5891G	p.S1964C	AGCCCGGAGCGGG	.	28	18	0	0	.	16	6	9	0	1
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	16	16	1	0	C|0.925;A|0.075	0	0	0	0	0
TRIM13	10206	hgsc.bcm.edu;bcgsc.ca	37	13	50588527	50588530	+	RNA	DEL	ATAT	ATAT	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	ATAT	ATAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TRIM13-228	.	.	.	.	ACATACATATATA	.	17	14	24	0	.	0	0	0	0	0
RBM23	55147	ucsc.edu	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs56708790	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RBM23-91	NM_001077351	exon12	c.T1167C	p.A389A	GGCGGCAGCAGCA	.	52	7	53	0	A|0.887;G|0.113	32	16	16	0	0
OTX2	5015	ucsc.edu;bcgsc.ca	37	14	57272121	57272121	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	OTX2-205	NM_001270524	exon2	c.C54A	p.T18T	CGAAGTGGTCAGA	.	84	55	114	2	.	0	0	0	0	0
ACOT4	122970	hgsc.bcm.edu	37	14	74058832	74058832	+	Missense_Mutation	SNP	C	C	T	rs3742819		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ACOT4-90	NM_152331	exon1	c.C169T	p.R57C	GACGCCCGCGGCG	.	26	17	1	0	T|0.002;G|0.599	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	33	33	0	0	T|0.478;C|0.522	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	11	6	0	0	T|0.603;C|0.397	19	13	6	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	11	11	0	0	A|0.263;G|0.737	1	0	1	0	0
RPS2	6187	hgsc.bcm.edu	37	16	2014528	2014528	+	Silent	SNP	G	G	A	rs17135712	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RPS2-90	NM_002952	exon2	c.C99T	p.I33I	GCCCCGGATGCCA	.	31	16	0	0	G|0.933;A|0.067	270	82	187	1	0
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3304219	3304219	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MEFV-228	NM_000243	exon2	c.G849A	p.P283P	TCCATCCGGAGTG	.	78	42	55	0	.	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GGA2-91	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	8	8	0	0	G|0.500;C|0.500	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28842312	28842312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATXN2L-92	NM_148414	exon10	c.C1240T	p.R414W	GCACAACGGCCTC	.	25	9	24	0	.	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	17	11	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	22	18	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	22	0	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	22	18	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	22	18	1	0	.	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CDH15-523	NM_004933	exon11	c.A1750C	p.K584Q	TGCGGCAAGGACG	.	5	5	0	0	A|0.532;C|0.468	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	29	26	1	0	T|0.657;C|0.343	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	7	7	0	0	C|0.015;A|0.985	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TP53-70225	NM_000546	exon5	c.375+1G>T	.	AACTGACCGTGCA	.	125	107	189	0	.	6	0	6	0	0
FOXN1	8456	broad.mit.edu	37	17	26851082	26851082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FOXN1-226	NM_003593	exon1	c.G95T	p.G32V	CACCGGGCCTCCC	.	102	5	65	0	.	0	0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MYO18A-22	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG	.	40	4	17	0	.	1	1	0	0	0
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29187537	29187537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATAD5-93	NM_024857	exon10	c.G3043A	p.E1015K	CCAAATGAGTATT	.	96	20	123	0	.	0	0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36499001	36499001	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GPR179-93	NM_001004334	exon1	c.G672A	p.T224T	CTGCTGCGTGTCC	.	121	4	171	2	.	0	0	0	0	0
TBX21	30009	hgsc.bcm.edu	37	17	45810919	45810919	+	Missense_Mutation	SNP	C	C	G	rs2240017	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TBX21-90	NM_013351	exon1	c.C99G	p.H33Q	GCAGCACCGCTAC	.	17	16	0	0	C|0.189;G|0.811	0	0	0	0	0
TBX2	6909	broad.mit.edu	37	17	59479224	59479224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TBX2-226	NM_005994	exon2	c.G575T	p.S192I	CAGACAGCCCAGC	.	120	10	170	2	.	1	1	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	10	8	1	0	T|0.941;C|0.059	0	0	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501701	501701	+	Missense_Mutation	SNP	G	G	A	rs72970252	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MADCAM1-90	NM_130760	exon4	c.G700A	p.D234N	CCTCCCGACACCA	.	228	14	187	3	G|0.879;A|0.121	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	38	17	0	0	G|0.749;A|0.251	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	37	37	0	0	T|0.403;C|0.597	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCF3-721	NM_003200	exon15	c.C1293T	p.G431G	CATGGGGCCGGTG	.	33	19	0	0	G|0.903;A|0.097	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCF3-721	NM_003200	exon15	c.G1291A	p.G431S	TGGGGCCGGTGAA	.	35	20	0	0	C|0.901;T|0.099	0	0	0	0	0
REXO1	57455	hgsc.bcm.edu	37	19	1828401	1828401	+	Silent	SNP	G	G	A	rs185543381	by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	REXO1-90	NM_020695	exon2	c.C387T	p.P129P	GCCGCGGGGCGCC	.	120	71	0	0	G|0.997;A|0.003	3	0	3	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KANK3-90	NM_198471	exon3	c.G60C	p.P20P	GGGGACCGGGCAC	.	9	6	1	0	C|0.880;G|0.120	0	0	0	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651052	8651052	+	Missense_Mutation	SNP	G	G	T	rs200370843		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ADAMTS10-229	NM_030957	exon22	c.C2614A	p.L872M	TGGGCAGCTTGCT	.	103	10	51	2	.	2	2	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057171	9057171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MUC16-566	NM_024690	exon3	c.A30275G	p.D10092G	TCTGTATCTGTGG	.	224	112	125	0	.	0	0	0	0	0
TMED1	11018	broad.mit.edu	37	19	10946806	10946806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TMED1-155	NM_006858	exon1	c.T62G	p.V21G	CCTCCCACCTCCA	.	143	22	94	17	.	12	12	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	164	14	15	0	.	18	18	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	34	14	0	0	C|0.617;T|0.383	7	7	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	6	6	0	0	A|0.065;C|0.935	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	32	7	0	0	T|0.545;C|0.455	0	0	0	0	0
ZNF229	7772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934458	44934458	+	Silent	SNP	G	G	A	rs185368876		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF229-94	NM_014518	exon6	c.C498T	p.I166I	TAGACCGATAAGC	.	190	104	117	0	G|0.999;A|0.001	8	1	7	0	0
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260388	45260388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	BCL3-848	NM_005178	exon4	c.G634A	p.A212T	CACCTGGCGTGCG	.	129	67	23	0	.	57	22	35	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	39	21	1	0	C|0.804;T|0.196	21	10	11	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	10	10	0	0	G|0.738;A|0.262	3	0	3	0	0
ZNF473	25888	broad.mit.edu	37	19	50548742	50548742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF473-91	NM_015428	exon5	c.G1042C	p.E348Q	CGCTATGAGTGTT	.	203	6	138	0	.	9	9	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	rs12983578		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CTU1-68	NM_145232	exon3	c.G607C	p.E203Q	CCCCCTCGCCGGG	.	8	8	0	0	C|0.900;G|0.100	4	0	4	0	0
PPP6R1	22870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55758252	55758252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PPP6R1-67	NM_014931	exon2	c.C220T	p.R74C	TGTAGCGCAGCCG	.	138	54	99	2	.	1	0	1	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	18	17	0	0	.	0	0	0	0	0
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58132312	58132312	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF134-226	NM_003435	exon3	c.A825G	p.L275L	CAATCTAATTGTA	.	119	53	75	0	.	20	7	13	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	10	10	0	0	A|0.003;G|0.997	0	0	0	0	0
PKDCC	91461	hgsc.bcm.edu	37	2	42275726	42275726	+	Silent	SNP	C	C	G	rs11891679	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PKDCC-67	NM_138370	exon1	c.C387G	p.R129R	CCCGCGCCTGGGC	.	7	7	0	0	C|0.762;G|0.238	0	0	0	0	0
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46987103	46987103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SOCS5-659	NM_144949	exon2	c.G1434C	p.R478S	AAATAGGACTTTC	.	119	99	119	0	.	1	0	1	0	0
MRPL53	116540	bcgsc.ca	37	2	74699702	74699702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MRPL53-90	NM_053050	exon1	c.C86T	p.S29L	CTCGTCGATTCCA	.	287	11	338	0	.	5	5	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATOH8-90	NM_032827	exon1	c.T449C	p.L150P	CGGGTCTGCGTCC	.	6	6	0	0	T|0.382;C|0.618	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	20	20	0	0	A|0.029;G|0.971	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	18	17	1	0	T|0.877;C|0.123	6	0	6	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3209573	3209573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC4A11-91	NM_001174090	exon17	c.G2232C	p.W744C	ATGGATCCAAGGC	.	202	26	218	0	.	2	2	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	10	5	0	0	G|0.122;C|0.878	0	0	0	0	0
GATA5	140628	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61048581	61048581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GATA5-90	NM_080473	exon3	c.G577A	p.G193R	GGGCCCCGCAGTT	.	248	76	227	2	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	66	4	17	0	A|0.979;G|0.021	147	135	12	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038077	62038077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KCNQ2-92	NM_172107	exon17	c.A2539C	p.T847P	ACGGGGTACAGAG	.	51	18	22	4	.	0	0	0	0	0
MX2	4600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42749766	42749766	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MX2-92	NM_002463	exon3	c.C300T	p.C100C	CCCCTGCATTGAC	.	176	25	144	0	.	1	1	0	0	0
RRP1	8568	bcgsc.ca	37	21	45211298	45211298	+	Missense_Mutation	SNP	C	C	A	rs201407956	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RRP1-90	NM_003683	exon2	c.C201A	p.D67E	GCAGGACAAGCCA	.	189	40	145	19	C|0.998;A|0.002	37	36	1	0	0
ADARB1	104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46640924	46640924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ADARB1-91	NM_015834	exon11	c.G2041A	p.G681S	GTGCACGGCAAGG	.	134	34	102	1	.	0	0	0	0	0
PATZ1	23598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31741420	31741420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PATZ1-590	NM_032050	exon1	c.G169A	p.A57T	GCACGGCGCGGTG	.	116	18	34	0	.	4	4	0	0	0
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42271554	42271554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SREBF2-154	NM_004599	exon7	c.1212delA	p.L404fs	GCTTCTAAAGGGC	.	79	69	131	0	.	0	0	0	0	0
MOV10L1	54456	bcgsc.ca	37	22	50528916	50528916	+	Silent	SNP	C	C	T	rs9617018	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MOV10L1-93	NM_001164105	exon1	c.C12T	p.L4L	GTTCCTCCCTGTC	.	71	7	103	0	C|0.845;T|0.155	0	0	0	0	0
TMEM158	25907	hgsc.bcm.edu	37	3	45267310	45267310	+	Silent	SNP	C	C	T	rs41118	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_015444	exon1	c.G210A	p.A70A	CGCCGCCGCCGCC	.	5	5	0	0	C|0.328;T|0.672	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	8	8	0	0	T|0.749;G|0.251	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	27	27	0	0	G|0.797;A|0.203	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	125	20	5	0	T|0.980;C|0.020	2	2	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	60	31	2	0	C|0.960;G|0.040	13	2	11	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	22	16	3	0	C|1.000;|0.000	21	10	11	0	0
DRD5	1816	ucsc.edu	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	DRD5-91	NM_000798	exon1	c.T964C	p.C322R	CCTTTCTGCAGTG	.	76	9	101	4	T|0.500;C|0.500	0	0	0	0	0
PCDH7	5099	broad.mit.edu;bcgsc.ca	37	4	30724413	30724413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PCDH7-229	NM_032457	exon1	c.G1369A	p.V457M	AACGGGGTGGTCA	.	209	16	193	1	.	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	12	11	0	0	G|0.970;T|0.030	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	9	8	0	0	T|0.691;C|0.309	0	0	0	0	0
MTTP	4547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100512918	100512918	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MTTP-93	NM_000253	exon7	c.A729G	p.L243L	TTTCCTACAAACC	.	117	92	130	0	.	2	0	2	0	0
IL2	3558	ucsc.edu;bcgsc.ca	37	4	123372913	123372913	+	Silent	SNP	C	C	T	rs1051753		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	IL2-659	NM_000586	exon4	c.G456A	p.L152L	TCAAGTCAGTGTT	.	138	117	218	3	C|1.000;|0.000	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190876277	190876277	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FRG1-90	NM_004477	exon5	c.A403T	p.R135X	GGACCAAGAGAAC	.	345	15	341	7	.	161	161	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	9	4	0	0	G|0.975;A|0.025	0	0	0	0	0
PDCD6	10016	hgsc.bcm.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PDCD6-290	NM_013232	exon1	c.23_34del	p.8_12del	ACCGCCCCGGCCC	.	40	11	2	1	.	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	8	8	0	0	T|0.352;C|0.648	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	10	7	0	0	C|0.454;G|0.546	1	1	0	0	0
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79733160	79733160	+	Missense_Mutation	SNP	A	A	G	rs141062809		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFYVE16-90	NM_001105251	exon4	c.A656G	p.Y219C	ATTCCTATAATTA	.	143	49	69	0	A|1.000;G|0.000	1	1	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950712	79950738	+	In_Frame_Del	DEL	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.166_192del	p.56_64del	GCTGCAGCGGCCG	.	45	0	12	0	.	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	52	8	12	0	G|0.834;C|0.166	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C	rs148550291		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G172C	p.A58P	GCGGCCGCAGCGG	.	49	7	10	0	G|0.837;C|0.162	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950724	79950724	+	Missense_Mutation	SNP	G	G	C	rs2001675		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G178C	p.A60P	GCAGCGGCCGCAG	.	45	5	8	0	G|0.177;C|0.823	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CCCCCAGCT	CCCCCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.196_204del	p.66_68del	CCAGCGCCCCCAG	.	28	19	1	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	8	8	0	0	T|0.046;G|0.950	2	0	2	0	0
DND1	373863	hgsc.bcm.edu	37	5	140052320	140052320	+	Missense_Mutation	SNP	T	T	C	rs201446376	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	DND1-90	NM_194249	exon3	c.A314G	p.Y105C	GAGCTGTAGCGGG	.	76	5	5	0	T|0.983;C|0.016	2	2	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	167	40	2	0	.	24	24	0	0	0
N4BP3	23138	broad.mit.edu	37	5	177547312	177547312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	N4BP3-90	NM_015111	exon3	c.A464C	p.H155P	CCTGCCACCCGCC	.	126	34	34	3	.	1	1	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039098	30039098	+	Silent	SNP	T	T	C	rs2301754		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RNF39-226	NM_025236	exon4	c.A1053G	p.E351E	GGTGGGTTCGGGT	.	17	14	0	0	G|0.184;C|0.001	0	0	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	15	15	1	0	C|0.862;A|0.138	0	0	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039373	30039373	+	Missense_Mutation	SNP	G	G	C	rs61754472		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RNF39-226	NM_025236	exon4	c.C778G	p.P260A	CAGGGGGCGCGGG	.	13	12	1	0	G|0.966;C|0.034	0	0	0	0	0
TNXB	7148	bcgsc.ca	37	6	32017173	32017173	+	Missense_Mutation	SNP	G	G	C	rs41270450	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TNXB-90	NM_019105	exon28	c.C9625G	p.R3209G	TGACACGCACCAC	.	145	6	115	1	G|0.940;C|0.060	8	8	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	15	15	0	0	C|0.673;A|0.327	17	0	17	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	9	9	0	0	T|0.089;G|0.911	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484587	1484587	+	Silent	SNP	C	C	T	rs80020804	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MICALL2-90	NM_182924	exon6	c.G1119A	p.P373P	TGTGGCCGGGCGA	.	24	13	0	0	C|0.893;T|0.107	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	63	32	14	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	21	21	0	0	C|0.329;G|0.671	23	0	23	0	0
KPNA7	402569	broad.mit.edu	37	7	98790650	98790650	+	Missense_Mutation	SNP	T	T	G	rs202149995		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	KPNA7-158	NM_001145715	exon5	c.A628C	p.T210P	GCAGGGTGGGTGA	.	74	11	43	5	.	0	0	0	0	0
RELN	5649	broad.mit.edu;bcgsc.ca	37	7	103183277	103183277	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	RELN-574	NM_173054	exon43	c.C6572G	p.S2191C	TTTCGAGATGGTT	.	134	6	101	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	66	18	4	0	.	0	0	0	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175290	143175290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TAS2R41-92	NM_176883	exon1	c.G325T	p.V109L	TTCTGTGTGAAGA	.	112	3	85	0	.	0	0	0	0	0
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175367	143175367	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TAS2R41-92	NM_176883	exon1	c.G402T	p.L134L	GCTCCTGTTGGGC	.	93	42	90	0	.	0	0	0	0	0
MLL3	58508	bcgsc.ca	37	7	151970951	151970951	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MLL3-1398	NM_170606	exon7	c.G851A	p.R284Q	GCACATCGCTGAA	.	178	20	185	3	C|0.750;T|0.250	0	0	0	0	0
HR	55806	hgsc.bcm.edu	37	8	21983231	21983231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	HR-154	NM_018411	exon4	c.C1420A	p.Q474K	TGGCCTGGCCATC	.	96	5	120	0	.	0	0	0	0	0
TNFRSF10A	8797	broad.mit.edu;bcgsc.ca	37	8	23060257	23060257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TNFRSF10A-1086	NM_003844	exon3	c.C421T	p.H141Y	CAGGATGTTCTGA	.	177	7	193	0	.	0	0	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61766037	61766037	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CHD7-141	NM_017780	exon31	c.G6753A	p.S2251S	TAAGTCGGAAGAG	.	169	142	219	0	.	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144809268	144809268	+	Missense_Mutation	SNP	C	C	T	rs56148058	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FAM83H-92	NM_198488	exon5	c.G2363A	p.S788N	AGGCAGCTCTCGA	.	7	7	0	0	C|0.978;T|0.022	1	0	1	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	11	0	11	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	256	30	146	4	.	2	2	0	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940551	144940551	+	Missense_Mutation	SNP	C	C	T	rs201579633		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	EPPK1-25	NM_031308	exon1	c.G6871A	p.V2291M	CCACCACGCCCGC	.	118	22	12	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	29	5	2	0	A|0.738;G|0.262	2	2	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	17	16	0	0	G|0.992;C|0.006	0	0	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214719	214719	+	Silent	SNP	C	C	T	rs115610637	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	C9orf66-514	NM_152569	exon1	c.G678A	p.A226A	CAGTTCCGCGCTG	.	8	6	0	0	C|0.983;T|0.017	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	50	22	0	0	G|0.572;C|0.428	5	4	1	0	0
FAM120AOS	158293	hgsc.bcm.edu	37	9	96214852	96214852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FAM120AOS-90	NM_198841	exon1	c.G140A	p.R47H	AGGCCGCGCGCTG	.	23	10	3	0	.	0	0	0	0	0
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108120655	108120655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC44A1-94	NM_080546	exon7	c.G701A	p.R234K	TAATCAGGTATAT	.	91	45	99	0	.	35	27	8	0	0
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu	37	9	125133492	125133497	+	In_Frame_Del	DEL	TCCTGC	TCCTGC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TCCTGC	TCCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PTGS1-228	NM_001271164	exon2	c.35_40del	p.12_14del	TGCTGTTCCTGCT	.	36	12	12	0	.	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	19	9	0	0	T|0.886;C|0.114	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	5	5	0	0	A|0.006;C|0.994	0	0	0	0	0
ARSE	415	bcgsc.ca	37	X	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	rs35143646	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ARSE-131	NM_000047	exon9	c.G1270A	p.G424S	CCTCGCCGCCCGC	.	194	7	101	1	C|0.503;T|0.497	0	0	0	0	0
TCEANC	170082	bcgsc.ca	37	X	13681638	13681638	+	Silent	SNP	C	C	T	rs5935649	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCEANC-41	NM_152634	exon4	c.C1101T	p.N367N	TTGTAACGAATGT	.	96	5	111	1	C|0.470;T|0.530	0	0	0	0	0
TEX13A	56157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104463887	104463887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TEX13A-132	NM_031274	exon5	c.C989T	p.P330L	AGCTGAGGCGGAA	.	71	61	79	1	.	0	0	0	0	0
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149678251	149678251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MAMLD1-130	NM_005491	exon6	c.G2304C	p.R768S	GATCAGGTCTTAT	.	75	62	96	0	.	14	0	14	0	0
FLNA	2316	hgsc.bcm.edu	37	X	153599572	153599572	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FLNA-599	NM_001456	exon2	c.C42G	p.G14G	AGCCGCGCCTGCT	.	81	68	5	0	.	1	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152084175	152084176	+	In_Frame_Ins	INS	-	-	TGCTGCTCGCGCCTCTCC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TCHH-72	NM_007113	exon3	c.1518_1519insGGAGAGGCGCGAGCAGCA	p.Q506delinsQERREQQ	CCTTAGTTGCTGC	.	58	19	68	0	.	0	0	0	0	0
SLC30A1	7779	hgsc.bcm.edu	37	1	211749358	211749359	+	Nonsense_Mutation	INS	-	-	TAATTATTTCTACAAATGCTTTGCAGGGGTCAGGGAAACATGGATTC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC30A1-93	NM_021194	exon2	c.896_897insGAATCCATGTTTCCCTGACCCCTGCAAAGCATTTGTAGAAATAATTA	p.N299_S300delinsRIHVSLTPAKHLX	GTACTATTAATTA	.	46	0	66	0	.	0	0	0	0	0
FARP2	9855	broad.mit.edu	37	2	242433486	242433487	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FARP2-93	NM_014808	exon27	c.3111_3112insG	p.D1037fs	GCAGGATGGCCCC	.	242	10	260	0	.	0	0	0	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34926429	34926430	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SON-97	NM_032195	exon3	c.4892_4893insTT	p.S1631fs	ATTTATCTTTAAC	.	112	17	85	0	.	0	0	0	0	0
FNDC3B	64778	hgsc.bcm.edu	37	3	172050900	172050901	+	Frame_Shift_Ins	INS	-	-	ACACTGGAGAGGATTTAACCTGTACTGTG	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FNDC3B-155	NM_001135095	exon14	c.1576_1577insACACTGGAGAGGATTTAACCTGTACTGTG	p.Y526fs	CCAAAATACACTG	.	26	0	59	0	.	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	36	17	2	1	-|0.606;CCG|0.394	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	29	10	1	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306347	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TPSD1-90	NM_012217	exon1	c.G66C	p.P22R	GAGCCCGGCCTAC	.	254	0	21	0	.	0	0	0	0	0