Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	19	0	19	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	4	4	0	0	T|0.065;G|0.935	0	0	0	0	0
RRAGC	64121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39321479	39321479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RRAGC-91	NM_022157	exon3	c.A542T	p.D181V	AGACCATCAACTT	.	95	6	115	0	.	7	7	0	0	0
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52943488	52943488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZCCHC11-93	NM_001009881	exon12	c.T1915C	p.F639L	TGTAGAATTTAAG	.	112	18	111	0	.	1	1	0	0	0
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SSBP3-90	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT	.	68	5	81	1	.	10	10	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75036922	75036922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	C1orf173-94	NM_001002912	exon14	c.T4472C	p.L1491P	GCCTGTAGACTCT	.	126	4	169	0	.	0	0	0	0	0
NBPF14	25832	bcgsc.ca	37	1	148004732	148004732	+	Missense_Mutation	SNP	A	A	C	rs77570381		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NBPF14-91	NM_015383	exon22	c.T2582G	p.I861R	TAACATATATCCA	.	91	38	283	26	C|1.000;|0.000	88	0	88	0	0
NBPF14	25832	bcgsc.ca	37	1	148004749	148004749	+	Silent	SNP	C	C	T	rs77143638	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NBPF14-91	NM_015383	exon22	c.G2565A	p.L855L	GTCCTGCAAGACT	.	68	12	216	6	C|0.986;T|0.014	150	131	19	0	0
PEA15	8682	broad.mit.edu;bcgsc.ca	37	1	160182974	160182974	+	Silent	SNP	A	A	C	rs61756023	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PEA15-658	NM_003768	exon3	c.A247C	p.R83R	GACTACAGAACCC	.	191	7	254	0	A|0.999;C|0.001	56	53	3	0	0
SWT1	54823	bcgsc.ca	37	1	185240474	185240474	+	Missense_Mutation	SNP	A	A	G	rs12041704	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SWT1-91	NM_017673	exon17	c.A2461G	p.N821D	AACAGTAATTATC	.	114	5	182	2	A|0.637;G|0.363	2	2	0	0	0
SLC30A1	7779	broad.mit.edu;ucsc.edu	37	1	211749518	211749518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC30A1-93	NM_021194	exon2	c.C736T	p.R246C	CTCCACGCATGTT	.	113	3	119	0	.	17	15	2	0	0
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237754280	237754280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RYR2-158	NM_001035	exon31	c.G4148T	p.R1383L	CCTCTCGTCTGAA	.	37	4	34	0	.	0	0	0	0	0
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644430	70644430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STOX1-92	NM_152709	exon3	c.G878A	p.C293Y	ACATTTGTGAGAG	.	138	63	113	0	.	0	0	0	0	0
OR52K2	119774	broad.mit.edu	37	11	4470956	4470956	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	OR52K2-70	NM_001005172	exon1	c.C387A	p.C129X	TATCTGCAAGCCA	.	142	4	163	0	.	0	0	0	0	0
OR10W1	81341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58034971	58034971	+	Silent	SNP	C	C	T	rs200368241		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	OR10W1-69	NM_207374	exon1	c.G360A	p.P120P	CTGCAACGGGTGG	.	95	8	100	0	C|0.999;T|0.001	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	4	4	0	0	G|0.581;A|0.419	29	0	29	0	0
B4GALNT3	283358	bcgsc.ca	37	12	657404	657404	+	Missense_Mutation	SNP	G	G	A	rs11063529	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	B4GALNT3-92	NM_173593	exon9	c.G794A	p.R265Q	GGCGACGGAACGA	.	227	8	189	0	G|0.799;A|0.201	0	0	0	0	0
CLEC4C	170482	bcgsc.ca	37	12	7894056	7894056	+	Missense_Mutation	SNP	G	G	A	rs73056605	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CLEC4C-93	NM_130441	exon4	c.C196T	p.P66S	GGCTTGGATGATA	.	196	7	130	1	G|0.766;A|0.234	0	0	0	0	0
TBX5	6910	broad.mit.edu	37	12	114793360	114793360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TBX5-98	NM_000192	exon9	c.C1534A	p.P512T	ACTCTGGCACCAT	.	122	4	123	0	.	0	0	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	9	9	0	0	C|0.873;T|0.127	6	0	6	0	0
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23906646	23906646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SACS-298	NM_014363	exon10	c.A11369T	p.Q3790L	CGCAACTGAAAAC	.	70	4	111	0	.	1	1	0	0	0
PABPC3	5042	bcgsc.ca	37	13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	rs78826513	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PABPC3-72	NM_030979	exon1	c.A691G	p.K231E	AAATCCAAAGGAT	.	77	6	102	1	A|0.500;G|0.500	158	158	0	0	0
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32810275	32810275	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FRY-142	NM_023037	exon43	c.T5776C	p.L1926L	GACTGCTTGAAGA	.	98	7	116	0	.	5	5	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	102	3	139	1	.	72	72	0	0	0
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	96579505	96579505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	UGGT2-92	NM_020121	exon18	c.G2063T	p.R688L	TTAGTACGCAAAA	.	137	6	225	0	.	0	0	0	0	0
ACIN1	22985	broad.mit.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ACIN1-156	NM_014977	exon19	c.3880_3881del	p.1294_1294del	TCCCTTTCTCTCT	.	76	8	114	0	.	0	0	0	0	0
NDUFB1	4707	bcgsc.ca	37	14	92588002	92588002	+	Silent	SNP	T	T	G	rs3818263	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NDUFB1-90	NM_004545	exon1	c.A120C	p.V40V	AGCGCCTACAGCG	.	115	6	163	0	T|0.520;G|0.480	443	443	0	0	0
ARNT2	9915	bcgsc.ca	37	15	80884025	80884025	+	Missense_Mutation	SNP	G	G	A	rs4072568	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARNT2-175	NM_014862	exon18	c.G2035A	p.G679S	CAGCCCGGTCAGA	.	152	6	221	1	G|0.856;A|0.144	2	2	0	0	0
SRRM2	23524	broad.mit.edu	37	16	2820442	2820442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SRRM2-93	NM_016333	exon13	c.A8111G	p.Q2704R	CGCCCCAGCCCTC	.	104	3	103	0	.	327	327	0	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31477224	31477224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARMC5-24	NM_001105247	exon5	c.1918delG	p.G640fs	GGGGTTGGGGCCC	.	55	24	49	0	.	0	0	0	0	0
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	57793684	57793684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KIFC3-91	NM_001130100	exon18	c.C2432T	p.T811I	CTACTGGTCCCAG	.	130	7	105	0	.	20	20	0	0	0
CSNK2A2	1459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58200519	58200519	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CSNK2A2-790	NM_001896	exon9	c.C796T	p.L266L	GATCTAGGTCTAT	.	130	58	121	1	.	23	16	7	0	0
KCNG4	93107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84271024	84271024	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KCNG4-93	NM_172347	exon2	c.G68C	p.W23S	TGACTCCAAGGGC	.	86	26	70	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	263682	263682	+	Missense_Mutation	SNP	G	G	A	rs181299622		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	C17orf97-91	NM_001013672	exon2	c.G1048A	p.E350K	GACCCCGAGGCCC	.	113	6	84	0	G|0.978;A|0.022	70	52	18	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	5	5	0	0	C|0.015;A|0.985	0	0	0	0	0
POLR2A	5430	bcgsc.ca	37	17	7399866	7399866	+	Silent	SNP	G	G	A	rs2301609	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	POLR2A-91	NM_000937	exon4	c.G471A	p.G157G	GGGTGGGGAGGAG	.	203	7	199	2	G|0.810;A|0.190	2	2	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001130677	exon1	c.C290T	p.P97L	ACGCCGGGCCGCC	.	5	5	0	0	G|0.750;A|0.250	0	0	0	0	0
BTBD17	388419	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72356326	72356326	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	BTBD17-22	NM_001080466	exon2	c.G144A	p.A48A	GAGCACCGCCTGG	.	228	96	163	1	.	0	0	0	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	81	11	70	2	.	0	0	0	0	0
DNAH17	8632	broad.mit.edu	37	17	76433833	76433833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAH17-142	NM_173628	exon74	c.G11923A	p.E3975K	GGGTCTCGGGGCT	.	102	4	95	1	.	0	0	0	0	0
ZNF271	10778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32886662	32886662	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF271-90	.	.	.	.	GAAACCATATCCA	.	37	27	50	0	.	6	0	6	0	0
WDR7	23335	broad.mit.edu	37	18	54424373	54424373	+	Missense_Mutation	SNP	G	G	C	rs200902295		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WDR7-93	NM_052834	exon15	c.G2549C	p.G850A	TGCCGGGTTATAA	.	173	4	228	2	G|0.999;C|0.001	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	7	4	0	0	T|0.403;C|0.597	7	7	0	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DOHH-90	NM_001145165	exon4	c.C531G	p.R177R	CATGGCGCGGTAT	.	26	11	2	0	G|0.979;C|0.021	12	6	6	0	0
FUT3	2525	broad.mit.edu;bcgsc.ca	37	19	5844265	5844265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FUT3-90	NM_001097640	exon3	c.G586A	p.A196T	ACACCGCCCAGGC	.	217	66	204	1	.	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	6	5	2	0	C|0.617;T|0.383	13	9	4	0	0
HAPLN4	404037	hgsc.bcm.edu	37	19	19373528	19373553	+	Frame_Shift_Del	DEL	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HAPLN4-91	NM_023002	wholegene			CCCGCAGCCCCAC	.	70	19	37	0	.	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	7	7	0	0	T|0.545;C|0.455	2	0	2	0	0
ZNF229	7772	broad.mit.edu;bcgsc.ca	37	19	44933163	44933163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF229-94	NM_014518	exon6	c.G1793C	p.R598T	TAGGGCCTCTCTC	.	155	7	111	1	.	10	10	0	0	0
LMTK3	114783	broad.mit.edu	37	19	49004261	49004261	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LMTK3-1357	NM_001080434	exon11	c.G1230A	p.A410A	GTAGTCCGCGTAA	.	199	4	177	0	.	0	0	0	0	0
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	101	6	100	0	G|0.903;A|0.097	0	0	0	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469926	25469926	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNMT3A-1924	NM_175629	exon9	c.C1116T	p.V372V	CTGCAGGACCTCG	.	106	4	162	1	.	0	0	0	0	0
DYSF	8291	bcgsc.ca	37	2	71780215	71780215	+	Silent	SNP	T	T	C	rs2303596	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DYSF-158	NM_001130982	exon21	c.T1923C	p.D641D	GGATGATGCCATC	.	305	10	421	4	T|0.328;C|0.672	6	6	0	0	0
LRP2	4036	bcgsc.ca	37	2	170096095	170096095	+	Silent	SNP	C	C	G	rs34915742	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LRP2-175	NM_004525	exon26	c.G4236C	p.R1412R	CGAGCACCGGAAA	.	201	7	248	3	C|0.714;G|0.286	0	0	0	0	0
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	177016766	177016766	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HOXD4-91	NM_014621	exon1	c.C405A	p.P135P	CTACCCCTGGATG	.	81	12	135	0	.	0	0	0	0	0
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124357	217124357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MARCH4-69	NM_020814	exon4	c.G911A	p.R304Q	TGCCACCGTTTAA	.	87	52	87	0	.	0	0	0	0	0
TIGD1	200765	hgsc.bcm.edu;broad.mit.edu	37	2	233414422	233414422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TIGD1-22	NM_145702	exon1	c.C171A	p.F57L	CTTCAAGAACTTT	.	51	4	53	0	.	6	6	0	0	0
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241066032	241066032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MYEOV2-68	NM_138336	exon5	c.C707A	p.A236D	CCACCAGCAACGG	.	156	9	195	0	.	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	12	9	0	0	C|0.615;A|0.385	101	54	47	0	0
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39918189	39918189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ATF4-90	NM_001675	exon2	c.C638T	p.T213I	AAGACACCCCTTC	.	308	216	419	1	.	312	27	285	0	0
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49211828	49211828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KLHDC8B-90	NM_173546	exon3	c.A533G	p.Y178C	AGATCTATGTCCT	.	102	33	92	0	.	4	1	3	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755684	49755684	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	AMIGO3-91	NM_198722	exon1	c.A1215C	p.P405P	GCAGGGTGGGGCG	.	92	19	55	8	.	5	3	2	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554839	52554839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STAB1-139	NM_015136	exon55	c.G5726T	p.W1909L	CCTGCTGGCGCTT	.	58	12	52	0	.	43	43	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872602	127872602	+	Silent	SNP	A	A	G	rs11719546	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EEFSEC-91	NM_021937	exon1	c.A252G	p.P84P	CGAGCCACTGCTT	.	5	5	2	0	A|0.881;G|0.119	2	0	2	0	0
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132245070	132245070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAJC13-272	NM_015268	exon53	c.C6326G	p.A2109G	GTCTAGCCTGTGA	.	219	85	131	0	.	45	23	22	0	0
IDUA	3425	hgsc.bcm.edu	37	4	996888	996888	+	Silent	SNP	C	C	T	rs115929690	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	IDUA-91	NM_000203	exon10	c.C1467T	p.R489R	GCGGCGCCTGGGC	.	9	5	2	0	C|0.817;T|0.183	0	0	0	0	0
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56737029	56737029	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EXOC1-950	NM_018261	exon6	c.C789T	p.N263N	TAGTAACACTAAT	.	191	86	170	0	.	9	8	1	0	0
STBD1	8987	broad.mit.edu	37	4	77231087	77231087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STBD1-69	NM_003943	exon2	c.C1011T	p.C337C	AGAATGCAGCAAT	.	115	3	90	0	.	42	42	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	7	5	1	0	T|0.691;C|0.309	0	0	0	0	0
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175158607	175158607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FBXO8-290	NM_012180	exon6	c.C916T	p.H306Y	AAAGATGCCCTAC	.	83	26	101	0	.	36	18	18	0	0
PDZD2	23037	bcgsc.ca	37	5	32074509	32074509	+	Silent	SNP	G	G	A	rs2291113	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PDZD2-563	NM_178140	exon17	c.G3297A	p.T1099T	TCCGACGAACACT	.	125	5	98	1	G|0.922;A|0.078	0	0	0	0	0
NUP155	9631	broad.mit.edu;bcgsc.ca	37	5	37328505	37328505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NUP155-205	NM_153485	exon17	c.G1831A	p.G611S	GACTACCACTAGG	.	627	18	503	0	.	7	6	1	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	5	5	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573548	140573548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PCDHB10-92	NM_018930	exon1	c.G1423C	p.A475P	GTCAGCGCCACAG	.	267	5	208	0	.	18	18	0	0	0
C5orf52	100190949	broad.mit.edu	37	5	157102159	157102159	+	Missense_Mutation	SNP	G	G	A	rs10051838	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001145132	exon2	c.G272A	p.R91Q	TATCTCGGGTGAT	.	120	3	96	0	G|0.823;A|0.177	0	0	0	0	0
GPLD1	2822	bcgsc.ca	37	6	24437408	24437408	+	Silent	SNP	G	G	A	rs61733145	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GPLD1-228	NM_001503	exon21	c.C2130T	p.S710S	GTCTCCGCTGAAG	.	115	5	183	2	G|0.961;A|0.039	0	0	0	0	0
COL11A2	1302	ucsc.edu;bcgsc.ca	37	6	33138677	33138677	+	Silent	SNP	G	G	A	rs1799911	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	COL11A2-95	NM_080680	exon46	c.C3384T	p.P1128P	AGCTCCGGGCTCC	.	35	4	50	0	G|0.763;A|0.237	0	0	0	0	0
MICAL1	64780	broad.mit.edu;bcgsc.ca	37	6	109767928	109767928	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MICAL1-154	NM_022765	exon18	c.G2275T	p.E759X	TGCCTTCCGCTTT	.	144	6	130	0	.	1	1	0	0	0
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21892238	21892238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAH11-146	.	.	.	.	GCAGAGATAGAGC	.	230	7	157	0	.	0	0	0	0	0
GHRHR	2692	broad.mit.edu;bcgsc.ca	37	7	31016898	31016898	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GHRHR-586	NM_000823	exon12	c.C1107A	p.G369G	ACAGGGCTTCATT	.	208	7	180	0	.	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123900	45123900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001146334	exon2	c.1879delT	p.S627fs	GCTGGGACACAAT	.	6	2	10	0	.	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45125700	45125700	+	Missense_Mutation	SNP	C	C	T	rs141784618		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001146334	exon2	c.G79A	p.D27N	CCGCATCGCAGGA	.	5	4	4	0	C|0.995;T|0.005	0	0	0	0	0
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99092230	99092230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF394-90	NM_032164	exon3	c.A608G	p.K203R	AACTCTTTGTTCT	.	46	24	21	0	.	6	1	5	0	0
FAM22F	54754	broad.mit.edu	37	9	97080947	97080948	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FAM22F-68	NM_017561	exon7	c.2070_2071del	p.690_691del	CAGGAGAAGGTGA	.	286	7	206	1	.	0	0	0	0	0
FAM22F	54754	broad.mit.edu	37	9	97080951	97080951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FAM22F-68	NM_017561	exon7	c.2067delA	p.S689fs	AGAAGGTGATGGG	.	284	7	208	1	.	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	4	4	0	0	A|0.006;C|0.994	0	0	0	0	0
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3229333	3229333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MXRA5-136	NM_015419	exon7	c.T6911A	p.F2304Y	TTGTTGAAGACGA	.	152	52	118	1	.	0	0	0	0	0
ASB12	142689	broad.mit.edu	37	X	63444868	63444868	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ASB12-228	NM_130388	exon2	c.A663C	p.P221P	GGGTCTTGGGACA	.	245	16	177	6	.	4	4	0	0	0
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808269	100808269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARMCX1-134	NM_016608	exon4	c.C356T	p.A119V	AACAGGCAAGTGC	.	140	44	113	1	.	36	36	0	0	0
ATP11C	286410	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138901556	138901556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ATP11C-198	NM_001010986	exon3	c.C187G	p.L63V	CAAACAGATTCTT	.	93	25	104	1	.	4	4	0	0	0
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153035385	153035385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PLXNB3-130	NM_001163257	exon8	c.G1689C	p.E563D	CCAGGAGCAGGGC	.	181	68	203	2	.	0	0	0	0	0
HCFC1	3054	bcgsc.ca	37	X	153215839	153215839	+	Silent	SNP	G	G	A	rs3027875		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HCFC1-132	NM_005334	exon24	c.C5859T	p.C1953C	GGGCCCGCAGTAC	.	152	7	138	0	G|0.712;A|0.288	21	21	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123894	45123895	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	.	NM_001146334	exon2	c.1885_1886insG	p.Q629fs	CAGCCTGCTGGGA	.	6	2	11	0	.	0	0	0	0	0
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	82667643	82667644	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CHMP4C-92	NM_152284	exon3	c.407_408insA	p.T136fs	AGATCACAGAGCA	.	176	63	138	0	.	0	0	0	0	0
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23429210	23429211	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC25A37-90	NM_016612	exon4	c.G860T	p.R287L	CCTTCCGGACGGT	.	116	12	80	0	.	0	0	0	0	0