Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SCNN1D 6339 hgsc.bcm.edu 37 1 1226692 1226692 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCNN1D-90 NM_001130413 exon18 c.T2111C p.V704A CCTCCGTCCTCTC . 40 38 4 0 . 3 0 3 0 0 ATAD3B 83858 hgsc.bcm.edu 37 1 1431081 1431081 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATAD3B-44 NM_031921 exon16 c.1831delT p.C611fs GGCCCCTGCACAT . 88 18 32 0 . 0 0 0 0 0 CHD5 26038 bcgsc.ca;mdanderson.org 37 1 6194223 6194223 + Missense_Mutation SNP G G A rs200489902 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CHD5-719 NM_015557 exon20 c.C3109T p.R1037W CATCCCGCAGTTT . 41 34 39 1 G|0.999;A|0.000 0 0 0 0 0 RPL22 6146 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 6257785 6257785 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RPL22-650 NM_000983 exon2 c.44delA p.K15fs TGCTTCTTTTTTT . 22 18 38 0 . 0 0 0 0 0 PLEKHG5 57449 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 6534211 6534211 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLEKHG5-652 NM_001265592 exon8 c.T690C p.P230P ATCTCCAGGCTTG . 58 43 52 0 . 5 0 5 0 0 PER3 8863 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 7887490 7887490 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PER3-93 NM_016831 exon17 c.G2477T p.G826V TGCATGGGCTGCC . 80 66 53 1 . 0 0 0 0 0 UBE4B 10277 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 10197164 10197164 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UBE4B-229 NM_001105562 exon17 c.C2264T p.T755M TCCCTACGGAGTG . 66 57 91 1 . 0 0 0 0 0 MASP2 10747 hgsc.bcm.edu 37 1 11105562 11105562 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MASP2-94 NM_139208 exon4 c.G447A p.A149A GGTGGGCGCCTCT . 134 115 6 0 . 0 0 0 0 0 SPEN 23013 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 16254767 16254767 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPEN-298 NM_015001 exon11 c.C2032T p.R678W GATCCTCGGGAAT . 162 149 230 2 . 0 0 0 0 0 ARHGEF10L 55160 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 17982377 17982377 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARHGEF10L-292 NM_018125 exon24 c.2485delG p.G829fs CAGGTCGGGGGCG . 94 83 76 0 . 0 0 0 0 0 MRTO4 51154 bcgsc.ca 37 1 19584004 19584004 + Silent SNP G G A rs1042380 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MRTO4-90 NM_016183 exon5 c.G330A p.E110E AAAGGAGGAGGTG . 73 5 81 0 G|0.711;A|0.289 0 0 0 0 0 VWA5B1 127731 broad.mit.edu;bcgsc.ca 37 1 20639404 20639404 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001039500 exon3 c.C215T p.T72I TCGTGACAGTACA . 168 7 112 0 . 0 0 0 0 0 EIF4G3 8672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 21276548 21276548 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EIF4G3-91 NM_001198803 exon13 c.C636T p.S212S ATGAGCGCTCTCC . 93 44 79 0 . 3 2 1 0 0 SRRM1 10250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 24993380 24993380 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SRRM1-93 NM_005839 exon13 c.G1703A p.R568Q CTCCTCGACGGCG . 395 149 509 0 . 34 18 16 0 0 C1orf172 126695 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27278436 27278436 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C1orf172-154 NM_152365 exon2 c.C436T p.R146W CATCCCGCCGGCT . 108 8 55 0 . 0 0 0 0 0 SLC9A1 6548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27429001 27429001 + Silent SNP G G A rs144261466 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC9A1-91 NM_003047 exon8 c.C1695T p.G565G GCGCTCGCCAGCT . 63 59 58 0 G|1.000;A|0.000 5 1 4 0 0 ZSCAN20 7579 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 33954759 33954759 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZSCAN20-93 NM_145238 exon4 c.G649A p.V217I GGGAGCGTTGGAG . 167 82 173 1 . 0 0 0 0 0 DLGAP3 58512 broad.mit.edu 37 1 35370731 35370731 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DLGAP3-71 NM_001080418 exon1 c.254delG p.G85fs CTGCTACCCCCCC . 15 8 13 0 . 0 0 0 0 0 CSF3R 1441 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 36935323 36935323 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CSF3R-515 NM_156039 exon11 c.1404delC p.P468fs CGCGCTGGGGGGG . 56 39 26 0 . 0 0 0 0 0 KIAA0754 643314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39876656 39876656 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_015038 exon1 c.T719C p.V240A AAGCTGTAGCAAC . 100 77 147 0 . 0 0 0 0 0 KIAA0754 643314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39880128 39880128 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_015038 exon1 c.C4191T p.T1397T TGCAACCGCTGGA . 143 123 127 0 . 0 0 0 0 0 TMEM125 128218 hgsc.bcm.edu 37 1 43738798 43738798 + Silent SNP C C T rs139782659 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMEM125-153 NM_144626 exon4 c.C405T p.A135A GCTGGCCGCCGCC . 31 27 1 0 C|1.000;T|0.000 0 0 0 0 0 ARTN 9048 hgsc.bcm.edu 37 1 44402375 44402375 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARTN-90 NM_001136215 exon4 c.G625A p.V209I ATGGACGTCAACA . 85 30 7 0 . 0 0 0 0 0 SLC5A9 200010 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 48701436 48701436 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC5A9-93 NM_001135181 exon11 c.G1252A p.A418T ATGGCCGCTCTCA . 255 15 313 0 . 0 0 0 0 0 C8B 732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 57415368 57415368 + Missense_Mutation SNP G G A rs150146785 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C8B-92 NM_000066 exon6 c.C724T p.R242C CATTGCGTTCAAA . 60 51 98 1 G|0.999;A|0.001 0 0 0 0 0 DOCK7 85440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 62940939 62940939 + Silent SNP G G A rs202231787 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DOCK7-92 NM_001271999 exon46 c.C6012T p.P2004P GTCTGCGGGATCC . 108 10 139 0 G|0.999;A|0.001 4 3 1 0 0 FNDC7 163479 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 109273459 109273459 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FNDC7-92 NM_001144937 exon9 c.C1788T p.C596C AGGATGCATCACA . 134 8 178 0 . 0 0 0 0 0 MYBPHL 343263 ucsc.edu;bcgsc.ca 37 1 109839774 109839774 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYBPHL-92 NM_001010985 exon4 c.C468T p.D156D CCAAACGTCCACC . 163 150 196 3 . 0 0 0 0 0 CSF1 1435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110467421 110467421 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CSF1-91 NM_000757 exon7 c.G1593A p.A531A GAGAGCGGATTCT . 163 67 248 0 . 0 0 0 0 0 MOV10 4343 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 113237220 113237220 + Missense_Mutation SNP G G A rs112768939 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MOV10-95 NM_020963 exon9 c.G1441A p.V481I CGGGACGTCCCGC . 107 94 55 0 A|0.000;C|0.000;G|0.999 3 0 3 0 0 SYCP1 6847 hgsc.bcm.edu;broad.mit.edu 37 1 115537601 115537601 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYCP1-91 NM_003176 exon32 c.2892delA p.R964fs GGATAGAAAAAAA . 63 11 70 0 . 0 0 0 0 0 GDAP2 54834 hgsc.bcm.edu;bcgsc.ca 37 1 118439565 118439568 + Frame_Shift_Del DEL GAAA GAAA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 GAAA GAAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GDAP2-92 NM_017686 exon8 c.840_843del p.280_281del GCCAATGAAAGAG . 53 46 97 1 . 0 0 0 0 0 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu 37 1 150530506 150530506 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADAMTSL4-92 NM_019032 exon14 c.2263delG p.G755fs GAATTTGGGGGGG . 49 26 7 0 . 0 0 0 0 0 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150531111 150531111 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADAMTSL4-92 NM_019032 exon15 c.G2545A p.D849N CACAGCGACTGGA . 62 7 62 0 . 0 0 0 0 0 HRNR 388697 bcgsc.ca 37 1 152185882 152185882 + Silent SNP G G A rs77559827 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HRNR-93 NM_001009931 exon3 c.C8223T p.G2741G AGACTGGCCTGTG . 23 6 114 1 A|1.000;|0.000 0 0 0 0 0 HRNR 388697 bcgsc.ca 37 1 152187474 152187474 + Missense_Mutation SNP G G A rs143987598 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HRNR-93 NM_001009931 exon3 c.C6631T p.R2211C GGCCACGGCTGGA . 533 61 388 1 G|0.999;A|0.001 0 0 0 0 0 TPM3 7170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 154141804 154141804 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TPM3-416 NM_152263 exon9 c.C831T p.H277H GAGGGCGTGGTCC . 161 77 253 0 . 0 0 0 0 0 ARHGEF11 9826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156908212 156908212 + Missense_Mutation SNP G G A rs141649554 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARHGEF11-233 NM_198236 exon38 c.C4190T p.T1397M TTACCCGTAGCCT . 125 110 166 0 G|1.000;A|0.000 0 0 0 0 0 ATP1A2 477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160100011 160100011 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATP1A2-518 NM_000702 exon12 c.C1581T p.L527L CCCGCTCGACAAG . 66 61 77 0 . 0 0 0 0 0 USP21 27005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161130593 161130593 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . USP21-660 NM_001014443 exon3 c.C163T p.R55W CCTCCCCGGCCAG . 63 57 58 0 . 6 0 6 0 0 DUSP27 92235 bcgsc.ca 37 1 167096395 167096395 + Missense_Mutation SNP C C T rs76205550 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DUSP27-71 NM_001080426 exon5 c.C2027T p.T676M ACACGACGTCAGT . 238 8 189 1 C|0.984;T|0.016 0 0 0 0 0 FAM5B 57795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 177245455 177245455 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM5B-28 NM_021165 exon6 c.C897T p.C299C CAAGTGCAGCCCC . 396 175 427 0 . 0 0 0 0 0 KIAA1614 57710 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 180914481 180914481 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIAA1614-26 NM_020950 exon9 c.C3330T p.D1110D GGAGGACGTGGGT . 48 43 8 0 . 0 0 0 0 0 ATP2B4 493 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 203682343 203682343 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATP2B4-517 NM_001001396 exon14 c.G2262A p.A754A CCTGGCGCGATCT . 119 41 200 1 . 5 5 0 0 0 SRGAP2D 100996712 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 206566076 206566076 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001271887 exon2 c.G58A p.D20N AATGCCGACAGCA . 900 131 1069 0 . 10 9 1 0 0 RASSF5 83593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 206757996 206757996 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RASSF5-660 NM_182663 exon4 c.G968A p.R323Q TTAAGCGGATACA . 142 124 207 0 . 2 0 2 0 0 CR2 1380 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 207642044 207642044 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CR2-232 NM_001006658 exon3 c.618delC p.V206fs TGCTGTCCCCCCC . 61 57 98 0 . 0 0 0 0 0 PLXNA2 5362 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 208390432 208390432 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLXNA2-92 NM_025179 exon2 c.G836A p.R279H ACGATGCGTGAGG . 92 81 107 1 . 0 0 0 0 0 CAPN2 824 broad.mit.edu;bcgsc.ca 37 1 223947018 223947018 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CAPN2-523 NM_001748 exon12 c.C1364T p.T455M TCCTGACGAATCG . 188 7 261 0 . 11 11 0 0 0 RYR2 6262 broad.mit.edu;bcgsc.ca 37 1 237791320 237791320 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RYR2-158 NM_001035 exon41 c.G6380A p.R2127Q AGATTCGGTCCCT . 193 7 234 0 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 237811912 237811912 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RYR2-158 NM_001035 exon49 c.C7511T p.T2504M TAGATACGGTGAG . 68 4 92 0 . 0 0 0 0 0 AKR1C3 8644 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 5139659 5139659 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AKR1C3-515 NM_001253908 exon3 c.C286T p.R96X TTGGTCCGACCAG . 149 9 131 0 . 58 58 0 0 0 CALML3 810 bcgsc.ca 37 10 5567320 5567320 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CALML3-90 NM_005185 exon1 c.G272A p.R91H CCTTCCGCGTGTT . 248 171 35 2 . 0 0 0 0 0 ITIH2 3698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7768994 7768994 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ITIH2-93 NM_002216 exon10 c.C1066T p.R356X AACATTCGAACTT . 88 53 108 0 . 0 0 0 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 16994285 16994285 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CUBN-166 NM_001081 exon33 c.G4959A p.A1653A AGGTTGCGCTTGA . 189 62 188 0 . 0 0 0 0 0 PTPLA 9200 hgsc.bcm.edu 37 10 17659149 17659149 + Missense_Mutation SNP C C G rs7895850 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PTPLA-226 NM_014241 exon1 c.G190C p.E64Q TCCGCTCGCCGGG . 8 8 0 0 C|0.007;G|0.002;T|0.991 0 0 0 0 0 GPR158 57512 hgsc.bcm.edu 37 10 25465062 25465062 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPR158-141 NM_020752 exon1 c.G713A p.G238D GCCGCGGCCCCAA . 26 19 1 0 . 0 0 0 0 0 PARD3 56288 broad.mit.edu 37 10 34663856 34663856 + Silent SNP T T A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PARD3-92 NM_001184788 exon11 c.A1614T p.G538G CACAGTTCCTTCC . 120 5 102 0 . 0 0 0 0 0 BMS1 9790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 43285924 43285924 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BMS1-93 NM_014753 exon5 c.C601T p.R201X AAGAAGCGATTAA . 76 7 64 0 . 7 7 0 0 0 RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 43622076 43622076 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RET-4507 NM_020630 exon19 c.C3093T p.D1031D TGACGACGGCCTC . 90 26 65 0 . 6 3 3 0 0 PTPN20B 26095 hgsc.bcm.edu 37 10 46584455 46584455 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_015605 exon7 c.560delA p.N187fs TATCTGTTTTTTT . 80 33 60 0 . 0 0 0 0 0 GPRIN2 9721 hgsc.bcm.edu 37 10 47000217 47000217 + Missense_Mutation SNP G G A rs72780221 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPRIN2-90 NM_014696 exon3 c.G1337A p.R446H TGCGGCGCCCCAG . 9 4 0 0 G|0.901;A|0.099 1 1 0 0 0 PPYR1 5540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 47087520 47087520 + Missense_Mutation SNP G G A rs115443559 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PPYR1-524 NM_005972 exon3 c.G737A p.R246H AGGGGCGCGTGTT . 153 26 111 0 G|0.999;A|0.001 0 0 0 0 0 C10orf71 118461 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 10 50533416 50533416 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C10orf71-90 NM_001135196 exon3 c.G2826A p.S942S GGGGTCGAGCATG . 127 83 86 0 . 0 0 0 0 0 DRGX 644168 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 50574313 50574313 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . GCTCGCGGGCCTT . 127 79 44 1 . 0 0 0 0 0 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 55587306 55587306 + Missense_Mutation SNP C C T rs143538460 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDH15-193 NM_001142763 exon33 c.G4229A p.R1410H GCTTGACGTCTTG . 105 29 101 0 C|1.000;T|0.000 2 2 0 0 0 FAM13C 220965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 61012730 61012730 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM13C-70 NM_198215 exon12 c.G1361A p.R454H TGTGGACGGTCTT . 262 72 238 0 . 4 4 0 0 0 SUPV3L1 6832 broad.mit.edu 37 10 70967601 70967601 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SUPV3L1-227 NM_003171 exon14 c.G1829A p.R610Q TACGCCGATACAT . 201 4 179 0 . 43 43 0 0 0 H2AFY2 55506 broad.mit.edu 37 10 71871407 71871407 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . H2AFY2-91 NM_018649 exon9 c.G1087A p.V363M ATCTACGTGCAGG . 124 5 91 0 . 42 42 0 0 0 SPOCK2 9806 hgsc.bcm.edu 37 10 73848075 73848075 + Silent SNP C C T rs2306324 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPOCK2-90 NM_001134434 exon2 c.G12A p.P4P GCAGCCCGGGGCG . 4 4 0 0 C|0.870;T|0.130 0 0 0 0 0 USP54 159195 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 75290071 75290071 + Missense_Mutation SNP C C T rs150999517 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . USP54-721 NM_152586 exon12 c.G1658A p.R553H CAGTCACGAGAGT . 160 56 175 1 C|0.999;T|0.000 0 0 0 0 0 ZSWIM8 23053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 75552240 75552240 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001242488 exon10 c.C1943A p.P648H CCTGTCCTCTCCA . 131 47 84 0 . 17 12 5 0 0 GHITM 27069 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 85909926 85909926 + Silent SNP G G A rs201995209 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GHITM-90 NM_014394 exon7 c.G708A p.A236A GTGTGCGCCCAGT . 169 37 136 1 G|0.999;A|0.001 58 46 12 0 0 PAPSS2 9060 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 89469057 89469057 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PAPSS2-493 NM_001015880 exon2 c.C132T p.T44T ATGTACCGTGTGG . 33 12 44 0 . 1 1 0 0 0 LCOR 84458 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 98708916 98708916 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LCOR-189 NM_001170766 exon6 c.G102A p.P34P CCTGCCGAAAGCA . 82 52 81 1 . 0 0 0 0 0 RRP12 23223 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 99129265 99129265 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RRP12-92 NM_015179 exon25 c.G2872A p.V958M TGACCACGTCACG . 192 74 155 1 . 6 5 1 0 0 RRP12 23223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 99145706 99145706 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RRP12-92 NM_015179 exon9 c.C1062T p.H354H CCTGGCGTGGAAG . 257 157 173 0 . 0 0 0 0 0 PDZD7 79955 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 102789754 102789754 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDZD7-136 NM_001195263 exon2 c.G223A p.E75K TACCTTCGATGGG . 30 6 23 0 . 0 0 0 0 0 SUFU 51684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 104359294 104359294 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SUFU-2246 NM_001178133 exon8 c.C1015T p.R339W CACGACCGGGCCC . 114 35 88 0 . 0 0 0 0 0 PDCD11 22984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 105182858 105182858 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDCD11-275 NM_014976 exon18 c.G2611A p.D871N GTGCCCGACCTGG . 294 188 215 0 . 2 0 2 0 0 PDCD11 22984 broad.mit.edu;bcgsc.ca 37 10 105185215 105185215 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDCD11-275 NM_014976 exon20 c.A3238G p.T1080A CCTACTACCAAGC . 205 16 196 1 . 1 1 0 0 0 CALHM1 255022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105215444 105215444 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CALHM1-91 NM_001001412 exon2 c.C616T p.R206W AGGGCCGCACAGA . 161 19 76 0 . 0 0 0 0 0 CALHM3 119395 broad.mit.edu;bcgsc.ca 37 10 105233389 105233389 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CALHM3-67 NM_001129742 exon3 c.G616A p.D206N TCTGGTCGAAGCA . 164 6 50 0 . 0 0 0 0 0 INPP5F 22876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 121586489 121586489 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INPP5F-229 NM_014937 exon20 c.A2596G p.N866D CTTACAAATTCTA . 183 110 143 0 . 0 0 0 0 0 ADAM12 8038 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127755329 127755329 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADAM12-716 NM_021641 exon13 c.C1379T p.P460L GCGTCCGGCTTCA . 374 122 339 2 . 0 0 0 0 0 PWWP2B 170394 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 134219725 134219725 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PWWP2B-90 NM_138499 exon2 c.C1721T p.A574V ATGCCGCAAGACA . 159 103 121 2 . 60 16 44 0 0 RASSF7 8045 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 562158 562158 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RASSF7-91 NM_001143994 exon3 c.C204T p.G68G AGTGGGCGCCCAG . 173 11 77 0 . 16 16 0 0 0 PHRF1 57661 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 11 598468 598468 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHRF1-22 NM_020901 exon9 c.G990A p.T330T CCTGACGCCGCGC . 56 47 8 0 . 11 0 11 0 0 MUC2 4583 bcgsc.ca 37 11 1093410 1093410 + Silent SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MUC2-90 NM_002457 exon30 c.C5229A p.T1743T CCCAACCACGACA . 118 9 126 3 . 0 0 0 0 0 MUC5B 727897 bcgsc.ca 37 11 1266085 1266085 + Missense_Mutation SNP C C G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon31 c.C7975G p.P2659A CACACCCCCACAG . 537 80 492 17 . 0 0 0 0 0 MUC5B 727897 mdanderson.org 37 11 1266656 1266656 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon31 c.G8546A p.R2849H AGACCCGCACCTC . 114 53 24 1 . 0 0 0 0 0 MUC5B 727897 bcgsc.ca 37 11 1267793 1267793 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon31 c.C9683T p.T3228I GAAGCACAGCCAC . 292 89 285 4 . 0 0 0 0 0 MUC5B 727897 broad.mit.edu 37 11 1269600 1269600 + Silent SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon31 c.T11490C p.T3830T AGAGACTGCCCAC . 238 14 325 0 . 0 0 0 0 0 MUC5B 727897 bcgsc.ca 37 11 1270826 1270826 + Missense_Mutation SNP T T C rs4046507 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon31 c.T12716C p.M4239T CGGCCATGCCCTC . 373 314 377 78 T|0.976;C|0.024 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1276467 1276467 + Silent SNP A A G rs56344012 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002458 exon36 c.A15861G p.P5287P CCCACCACAGCCG . 24 18 6 0 A|0.981;G|0.019 0 0 0 0 0 OR51F2 119694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 4843086 4843086 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OR51F2-70 NM_001004753 exon1 c.G471T p.K157N TGCCAAGATTGGG . 148 77 198 1 . 0 0 0 0 0 MICAL2 9645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 12234878 12234878 + Silent SNP G G A rs138615174 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MICAL2-92 NM_014632 exon7 c.G768A p.A256A CACAGCGGAAGCC . 101 99 107 0 G|1.000;A|0.000 0 0 0 0 0 INSC 387755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 15262049 15262049 + Missense_Mutation SNP G G A rs201482506 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INSC-94 NM_001031853 exon12 c.G1591A p.A531T AGTGACGCCGTGC . 112 51 117 0 G|0.999;A|0.000 0 0 0 0 0 KCNJ11 3767 bcgsc.ca 37 11 17408630 17408630 + Missense_Mutation SNP C C T rs5215 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KCNJ11-91 NM_000525 exon1 c.G1009A p.V337I CTTTGACGGTGTT . 255 8 200 1 C|0.272;T|0.728 0 0 0 0 0 HPS5 11234 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 18339355 18339355 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HPS5-133 NM_181507 exon2 c.G51A p.E17E TTCAAACTCTGCA . 117 6 166 0 . 0 0 0 0 0 LDHA 3939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 18422479 18422479 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LDHA-650 NM_001165414 exon4 c.G427A p.V143M CGTAACGTGAACA . 130 76 191 0 . 2 2 0 0 0 NAV2 89797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 20075678 20075678 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NAV2-96 NM_001244963 exon19 c.C4603T p.R1535W TGGTTACGGTCCC . 86 74 96 0 . 1 0 1 0 0 LRRC4C 57689 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 40136451 40136451 + Silent SNP C C T rs116285789 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRRC4C-521 NM_001258419 exon7 c.G1392A p.P464P CTGAGACGGTTCC . 183 88 168 1 C|0.996;T|0.004 6 1 5 0 0 SLC35C1 55343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 45832787 45832787 + Silent SNP C C T rs144046143 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC35C1-90 NM_018389 exon2 c.C996T p.G332G GCTGGGCGGCTCC . 47 45 41 0 C|1.000;T|0.000 7 0 7 0 0 CRY2 1408 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 45892023 45892023 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CRY2-90 NM_021117 exon9 c.C1552T p.R518W ACCAGCCGGCTTA . 127 20 169 0 . 5 5 0 0 0 ARHGAP1 392 broad.mit.edu 37 11 46703669 46703669 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARHGAP1-227 NM_004308 exon5 c.C381T p.H127H CAGGCCGTGGTGC . 221 6 273 0 . 2 2 0 0 0 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46914637 46914637 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRP4-94 NM_002334 exon13 c.C1584T p.T528T TGAGTCGGTCCAG . 66 33 78 0 . 0 0 0 0 0 PACSIN3 29763 hgsc.bcm.edu 37 11 47202120 47202120 + Silent SNP G G A rs2291445 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PACSIN3-68 NM_016223 exon5 c.C333T p.R111R CCAGGCGCGCACC . 13 13 0 0 G|0.984;A|0.016 4 0 4 0 0 PTPRJ 5795 broad.mit.edu;bcgsc.ca 37 11 48161171 48161171 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PTPRJ-541 NM_002843 exon11 c.G2286A p.A762A CAATGCGACCCAC . 134 6 164 0 . 0 0 0 0 0 ZDHHC5 25921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57466653 57466653 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZDHHC5-226 NM_015457 exon11 c.G1745A p.R582H CCCCTCGTACTAG . 57 53 57 0 . 8 0 8 0 0 GLYATL1 92292 broad.mit.edu;bcgsc.ca 37 11 58723211 58723211 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GLYATL1-91 NM_080661 exon7 c.C713T p.A238V TGCCAGCAGCCTG . 121 5 185 0 . 0 0 0 0 0 PRPF19 27339 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 60666651 60666651 + Silent SNP G G A rs147483370 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRPF19-91 NM_014502 exon11 c.C954T p.G318G ATAGTCGCCAGTG . 72 64 108 2 G|0.993;A|0.007 16 1 15 0 0 AHNAK 79026 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62298815 62298815 + Missense_Mutation SNP G G A rs201304148 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AHNAK-109 NM_001620 exon5 c.C3074T p.A1025V ACATTCGCTTTGG . 107 16 140 1 G|1.000;C|0.000 2 2 0 0 0 NXF1 10482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62561845 62561845 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NXF1-228 NM_006362 exon19 c.G1645A p.A549T GCATAGCGAAGGC . 132 64 189 0 . 67 34 33 0 0 SLC22A8 9376 bcgsc.ca 37 11 62782278 62782278 + Silent SNP C C T rs4149180 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC22A8-93 NM_001184732 exon2 c.G153A p.P51P GTGGGGCGGGCGA . 85 6 88 0 C|0.824;T|0.176 0 0 0 0 0 C11orf84 144097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 63594410 63594410 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C11orf84-90 NM_138471 exon6 c.G945A p.P315P CCCTCCGGGGCTC . 58 25 30 0 . 1 1 0 0 0 SLC22A12 116085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64368361 64368361 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC22A12-91 NM_144585 exon9 c.G1549A p.E517K CTGCCCGAGACCC . 35 12 20 0 . 0 0 0 0 0 MEN1 4221 hgsc.bcm.edu 37 11 64572093 64572093 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MEN1-3017 NM_130800 exon10 c.1561delC p.R521fs GCTTCCGGGGGGG . 18 17 2 0 . 0 0 0 0 0 POLA2 23649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65034978 65034978 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POLA2-227 NM_002689 exon3 c.C235T p.H79Y GCCAGGCATAGTA . 58 48 100 0 . 1 1 0 0 0 PELI3 246330 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 66243098 66243098 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PELI3-91 NM_145065 exon8 c.C870T p.D290D GCAGGACGGCTCT . 238 19 106 0 . 1 1 0 0 0 NUMA1 4926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71718457 71718457 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NUMA1-633 NM_006185 exon21 c.C5241T p.D1747D GGTGCCGTCTGGC . 54 52 68 0 . 51 5 46 0 0 PHOX2A 401 hgsc.bcm.edu 37 11 71951242 71951242 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHOX2A-90 NM_005169 exon3 c.G406A p.V136I ACCAGACCTGCGG . 8 6 0 0 . 0 0 0 0 0 RPS3 6188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 75115215 75115215 + Missense_Mutation SNP G G A rs11546214 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RPS3-90 NM_001260506 exon5 c.G550A p.V184I TACTACGTTGACA . 179 159 175 0 . 925 70 855 0 0 MYO7A 4647 bcgsc.ca 37 11 76912590 76912590 + Silent SNP C C T rs80033599 bycluster;byfrequency;by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYO7A-138 NM_000260 exon36 c.C4950T p.N1650N GGCCAACGGCATC . 233 9 228 0 C|0.986;T|0.014 0 0 0 0 0 INTS4 92105 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 77614597 77614597 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INTS4-92 NM_033547 exon17 c.G2086A p.A696T TCGCTGCTGCTGA . 279 101 303 3 . 0 0 0 0 0 KCTD21 283219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 77885166 77885166 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KCTD21-69 NM_001029859 exon2 c.C435T p.N145N GTTGGCGTTGAAG . 81 68 131 0 . 0 0 0 0 0 CCDC83 220047 broad.mit.edu 37 11 85597253 85597253 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC83-91 NM_173556 exon5 c.G354A p.M118I GCGCATGCAAATA . 77 5 107 0 . 0 0 0 0 0 SLC36A4 120103 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92881964 92881964 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC36A4-93 NM_152313 exon11 c.C1254T p.F418F TCCAACGAAGGAA . 150 141 207 2 . 1 0 1 0 0 HEPHL1 341208 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 93826774 93826774 + Missense_Mutation SNP G G A rs200108606 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HEPHL1-71 NM_001098672 exon13 c.G2402A p.R801Q AAGCCCGACCACC . 175 9 226 0 G|0.999;A|0.000 0 0 0 0 0 FUT4 2526 hgsc.bcm.edu 37 11 94278062 94278062 + Missense_Mutation SNP A A G rs2230273 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FUT4-91 NM_002033 exon1 c.A763G p.I255V TGGGGCATCCAGG . 18 16 0 0 A|0.910;G|0.090 0 0 0 0 0 POU2AF1 5450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 111229514 111229514 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POU2AF1-658 NM_006235 exon2 c.C146T p.A49V CTCACCGCCGTAG . 74 35 51 0 . 0 0 0 0 0 HTR3A 3359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113860305 113860305 + Silent SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HTR3A-90 NM_213621 exon8 c.G1371T p.L457L GCTGCTGCAGGAG . 49 5 27 0 . 0 0 0 0 0 NXPE4 54827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 114453402 114453402 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001077639 exon3 c.G438A p.A146A CATCAGCGCTGGG . 237 115 298 0 . 0 0 0 0 0 TMPRSS4 56649 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 117984057 117984057 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMPRSS4-90 NM_019894 exon9 c.G817A p.V273M CTGGCTGTGGCCA . 174 10 233 0 . 0 0 0 0 0 CD3G 917 hgsc.bcm.edu 37 11 118220583 118220583 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CD3G-90 NM_000073 exon3 c.205delA p.K69fs GAAGATAAAAAAA . 122 97 175 1 . 0 0 0 0 0 PHLDB1 23187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118495742 118495742 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHLDB1-90 NM_001144758 exon5 c.C448T p.R150X GGGGGCCGAGCCC . 58 24 82 0 . 1 1 0 0 0 DDX6 1656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118635947 118635947 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DDX6-659 NM_004397 exon6 c.C616T p.R206X CATCTCGTAAATT . 91 36 126 0 . 2 1 1 0 0 CXCR5 643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118764716 118764716 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CXCR5-721 NM_001716 exon2 c.G463A p.V155I CACGCCGTCCATG . 125 62 58 0 . 0 0 0 0 0 POU2F3 25833 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 120175859 120175859 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POU2F3-92 NM_001244682 exon7 c.G571A p.E191K GACCTCGAGGAGC . 111 6 117 0 . 0 0 0 0 0 GRAMD1B 57476 broad.mit.edu 37 11 123483504 123483504 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRAMD1B-69 NM_020716 exon14 c.1526delG p.W509fs AGCCCTGGGGGTT . 118 10 133 0 . 0 0 0 0 0 VWA5A 4013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123993793 123993793 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VWA5A-92 NM_014622 exon7 c.T887C p.M296T GCCCCATGAGTAG . 36 34 39 0 . 2 0 2 0 0 OR8D2 283160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124189576 124189576 + Missense_Mutation SNP G G A rs151287996 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OR8D2-113 NM_001002918 exon1 c.C518T p.T173M CTGACCGTATGAG . 74 62 113 0 G|1.000;A|0.000 0 0 0 0 0 PKNOX2 63876 broad.mit.edu 37 11 125255595 125255595 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PKNOX2-93 NM_022062 exon6 c.G376A p.D126N TTCAGCGATGACC . 144 4 171 1 . 0 0 0 0 0 WNT5B 81029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 1742040 1742040 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WNT5B-562 NM_032642 exon3 c.C297T p.N99N GGACAACGCATCT . 154 34 86 0 . 0 0 0 0 0 CACNA2D4 93589 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 1988971 1988971 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA2D4-23 NM_172364 exon14 c.C1562T p.T521M CTCACCGTTTCGT . 151 10 87 0 . 0 0 0 0 0 CACNA2D4 93589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2019113 2019113 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA2D4-23 NM_172364 exon4 c.G445A p.E149K CCTCCTCGGCAGC . 118 60 76 0 . 0 0 0 0 0 TSPAN9 10867 bcgsc.ca 37 12 3390495 3390495 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TSPAN9-91 NM_006675 exon7 c.G564A p.T188T GAGAACGGTGAGG . 129 6 41 0 . 0 0 0 0 0 ANO2 57101 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 5724430 5724430 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANO2-139 NM_020373 exon18 c.G1850A p.R617H ATCAGGCGCTCTT . 187 34 148 1 . 0 0 0 0 0 GPR162 27239 hgsc.bcm.edu;broad.mit.edu 37 12 6934685 6934685 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPR162-92 NM_019858 exon3 c.904delC p.P302fs TCGGCGCCCCCCT . 103 25 24 0 . 0 0 0 0 0 C1R 715 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7187965 7187965 + Silent SNP C C T rs147540938 by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . AGTGTTCGGGTCC . 203 52 157 0 C|0.999;T|0.001 979 701 278 0 0 CLEC4A 50856 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 8290774 8290774 + Missense_Mutation SNP G G A rs200191238 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CLEC4A-90 NM_016184 exon6 c.G605A p.R202H ATGAGCGCTGCGT . 338 21 266 0 G|0.999;A|0.000 3 3 0 0 0 DDX11 1663 broad.mit.edu;bcgsc.ca 37 12 31254784 31254784 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DDX11-229 NM_030653 exon21 c.C2070T p.R690R GGGTCGCATTCTC . 269 10 150 0 . 12 12 0 0 0 SLC2A13 114134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 40422282 40422282 + Missense_Mutation SNP G G A rs200980396 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC2A13-515 NM_052885 exon3 c.C746T p.A249V ATAACCGCCGGAA . 42 26 27 0 . 0 0 0 0 0 VDR 7421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 48249477 48249477 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VDR-188 NM_001017536 exon7 c.G841A p.A281T GGTCAGCCAGGTG . 454 223 299 0 . 0 0 0 0 0 OR8S1 341568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 48921823 48921823 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OR8S1-69 NM_001005203 exon2 c.G1017A p.T339T GGTCACGCCTCAA . 60 31 20 0 . 0 0 0 0 0 WNT1 7471 hgsc.bcm.edu 37 12 49374348 49374348 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WNT1-1083 NM_005430 exon3 c.500delG p.W167fs GGCACTGGGGGGG . 110 33 4 0 . 0 0 0 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 49434492 49434492 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MLL2-612 NM_003482 exon31 c.7061delC p.P2354fs TGGGCAGGGGGTG . 109 52 47 0 . 0 0 0 0 0 KCNH3 23416 hgsc.bcm.edu 37 12 49943990 49943990 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KCNH3-90 NM_012284 exon10 c.G1796A p.R599Q CCCTGCGGCCCGC . 68 21 6 0 . 9 9 0 0 0 GPR84 53831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54757424 54757424 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPR84-523 NM_020370 exon2 c.C212T p.T71M AGGAGCGTGCAGT . 527 258 307 0 . 0 0 0 0 0 PA2G4 5036 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56504465 56504465 + Silent SNP G G A rs145895424 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PA2G4-68 NM_006191 exon9 c.G831A p.P277P CATGCCGTTTACT . 162 79 120 1 G|1.000;A|0.000 2 2 0 0 0 MYO1A 4640 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57432600 57432600 + Missense_Mutation SNP G G A rs141039063 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYO1A-231 NM_005379 exon16 c.C1526T p.A509V TTGCCCGCATAGT . 289 65 170 2 G|1.000;A|0.000 0 0 0 0 0 SHMT2 6472 ucsc.edu;bcgsc.ca 37 12 57624758 57624758 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SHMT2-91 NM_005412 exon2 c.G206A p.R69H AGTGTCGTGGCCT . 565 277 397 4 . 3 3 0 0 0 TMBIM4 51643 hgsc.bcm.edu 37 12 66531937 66531937 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMBIM4-515 NM_016056 exon7 c.520delT p.Y174fs CACTATAAAAAAA . 30 12 25 0 . 0 0 0 0 0 KCNC2 3747 ucsc.edu;bcgsc.ca 37 12 75444415 75444415 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KCNC2-224 NM_139137 exon3 c.G1370A p.C457Y AGAGCACACAGGG . 150 58 110 2 . 0 0 0 0 0 TMTC2 160335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 83290288 83290288 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMTC2-92 NM_152588 exon3 c.G1346A p.R449Q AAAAGCGGTTCCT . 96 42 83 0 . 1 1 0 0 0 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 85554403 85554403 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRRIQ1-95 NM_001079910 exon24 c.G4733A p.R1578H CTGTGCGTCTAGC . 108 42 92 0 . 0 0 0 0 0 SCYL2 55681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 100732792 100732792 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCYL2-336 NM_017988 exon18 c.G2632T p.G878C ACTATGGGCAGTT . 266 22 172 0 . 40 36 4 0 0 BTBD11 121551 hgsc.bcm.edu 37 12 107713511 107713511 + Missense_Mutation SNP G G C rs961498 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BTBD11-93 NM_001018072 exon1 c.G794C p.G265A GCCCTGGGTCAGG . 7 7 0 0 G|0.588;C|0.412 0 0 0 0 0 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 109613959 109613959 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACACB-98 NM_001093 exon8 c.C1328T p.A443V CCCAGGCAGCAGA . 276 44 205 0 . 0 0 0 0 0 OAS2 4939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113442751 113442751 + Missense_Mutation SNP G G A rs143746502 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OAS2-91 NM_002535 exon7 c.G1192A p.A398T TCAACCGCCAAAG . 130 66 86 0 G|0.999;A|0.000 0 0 0 0 0 OAS2 4939 broad.mit.edu;bcgsc.ca 37 12 113442852 113442852 + Silent SNP C C T rs186647423 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OAS2-91 NM_002535 exon7 c.C1293T p.I431I CAAAATCGTCAAG . 257 12 177 1 C|0.999;A|0.000 0 0 0 0 0 MAP1LC3B2 643246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117013775 117013775 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAP1LC3B2-68 NM_001085481 exon2 c.C28T p.R10W AAGCAGCGGCGCA . 247 52 153 0 . 1 0 1 0 0 C12orf49 79794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117160928 117160928 + Missense_Mutation SNP G G A rs149801903 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C12orf49-91 NM_024738 exon2 c.C212T p.P71L TTGCTCGGACGAC . 366 85 191 0 G|1.000;A|0.000 0 0 0 0 0 CAMKK2 10645 hgsc.bcm.edu 37 12 121711941 121711941 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CAMKK2-450 NM_153500 exon2 c.C389A p.P130H CTGACGGGTGAGT . 198 80 1 0 . 1 0 1 0 0 RHOF 54509 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 122219074 122219074 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RHOF-660 NM_019034 exon3 c.G251A p.R84Q AGGGGCCGCAGCC . 247 52 109 0 . 27 25 2 0 0 SETD1B 23067 broad.mit.edu 37 12 122252825 122252825 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SETD1B-86 NM_015048 exon6 c.C2704T p.R902W AAGGAGCGGATGG . 195 18 78 1 . 0 0 0 0 0 SNRNP35 11066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 123950559 123950559 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SNRNP35-68 NM_180699 exon2 c.C487T p.R163W GGGGGACGGGACC . 55 7 35 0 . 50 43 7 0 0 DNAH10 196385 broad.mit.edu 37 12 124417938 124417938 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAH10-95 NM_207437 exon76 c.C13003T p.L4335F TCCTACCTCACGG . 225 5 83 0 . 0 0 0 0 0 NCOR2 9612 hgsc.bcm.edu 37 12 124829305 124829305 + Missense_Mutation SNP A A T rs75902515 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NCOR2-229 NM_006312 exon34 c.T4552A p.S1518T CCCCCGAGCTGCT . 19 7 0 0 . 20 8 12 0 0 TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130184571 130184571 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMEM132D-106 NM_133448 exon2 c.G752T p.R251L CCTGTCCGGATCC . 134 59 88 0 . 0 0 0 0 0 EP400 57634 bcgsc.ca 37 12 132547096 132547096 + Silent SNP G G A rs74479394 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EP400-520 NM_015409 exon47 c.G8184A p.Q2728Q ACAACAGCAGCAG . 287 49 113 1 . 20 17 3 0 0 POLE 5426 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 133249853 133249853 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POLE-233 NM_006231 exon14 c.C1370T p.T457M GAATACGTGGCCA . 278 66 217 1 . 0 0 0 0 0 SPATA13 221178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 24825999 24825999 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPATA13-229 NM_001166271 exon4 c.C2163T p.N721N ATCCAACGGTGAG . 63 52 65 0 . 0 0 0 0 0 TSC22D1 8848 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 45147753 45147753 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TSC22D1-90 NM_183422 exon1 c.G2458A p.A820T TAACTGCAGGCAA . 103 9 131 0 . 4 4 0 0 0 ABCC4 10257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95840746 95840746 + Silent SNP G G A rs150945397 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ABCC4-515 NM_005845 exon10 c.C1314T p.G438G CAATTCGCCAGGT . 106 94 138 0 G|1.000;A|0.000 0 0 0 0 0 ING1 3621 bcgsc.ca 37 13 111371922 111371922 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ING1-515 NM_005537 exon2 c.C912T p.N304N TGAGAACGCGTCC . 282 255 82 2 . 16 1 15 0 0 ARHGEF7 8874 broad.mit.edu 37 13 111938538 111938538 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARHGEF7-232 NM_001113511 exon18 c.G2058A p.K686K GCCCAAGCGCAAA . 259 8 146 0 . 19 19 0 0 0 MCF2L 23263 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 113741680 113741680 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MCF2L-228 NM_001112732 exon22 c.C2505T p.H835H CCTGCACGAGAAG . 344 62 114 1 . 1 1 0 0 0 TFDP1 7027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114292172 114292172 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TFDP1-416 NM_007111 exon11 c.C1046T p.T349M TCACGACGGCAGG . 363 44 144 0 . 24 20 4 0 0 GRK1 6011 broad.mit.edu 37 13 114325865 114325865 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRK1-614 NM_002929 exon3 c.C879T p.R293R GCCGCGCGCCCTC . 202 6 58 0 . 0 0 0 0 0 MMP14 4323 hgsc.bcm.edu 37 14 23315160 23315160 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MMP14-226 NM_004995 exon10 c.C1661T p.A554V TGCTGGCGGTGGG . 34 15 0 0 . 16 10 6 0 0 MMP14 4323 broad.mit.edu 37 14 23315199 23315199 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MMP14-226 NM_004995 exon10 c.1700delC p.T567fs ATGGGACCCCCAG . 50 7 9 0 . 0 0 0 0 0 EFS 10278 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 23828979 23828979 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EFS-153 NM_005864 exon4 c.C708T p.P236P TTCCTCGGGTGCT . 83 13 70 0 . 0 0 0 0 0 AKAP6 9472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 33014537 33014537 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AKAP6-733 NM_004274 exon4 c.A678G p.E226E ATTCGAACTGTCT . 420 188 288 1 . 0 0 0 0 0 BAZ1A 11177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35231352 35231352 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BAZ1A-291 NM_013448 exon24 c.G3854A p.R1285H TGGCCACGACTTG . 128 26 89 0 . 11 9 2 0 0 MIS18BP1 55320 hgsc.bcm.edu 37 14 45716019 45716019 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MIS18BP1-90 NM_018353 exon2 c.471delA p.K157fs CTGCAATTTTTTT . 130 20 76 1 . 0 0 0 0 0 NIN 51199 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 51237214 51237215 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NIN-229 NM_020921 exon12 c.1325_1326del p.442_442del GATCTGCTCTCTC . 127 59 89 0 . 0 0 0 0 0 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64644168 64644168 + Silent SNP C C T rs202141038 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYNE2-164 NM_182914 exon96 c.C17523T p.H5841H GCTTCACGAGGAC . 247 116 187 0 C|0.999;T|0.000 3 2 1 0 0 SYNE2 23224 broad.mit.edu 37 14 64680991 64680991 + Missense_Mutation SNP G G A rs150629598 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYNE2-164 NM_182914 exon106 c.G19136A p.R6379H CTTGGCGTAAACG . 213 7 128 0 G|1.000;A|0.000 3 3 0 0 0 ACTN1 87 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 69371417 69371417 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACTN1-514 NM_001102 exon7 c.G631A p.V211M CTGCCACGTCAAA . 245 27 144 0 . 2 1 1 0 0 GALNT16 57452 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 69792727 69792727 + Missense_Mutation SNP G G A rs138742665 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001168368 exon5 c.G551A p.R184H GCCTGCGCAATGA . 264 14 149 0 G|1.000;A|0.000 2 2 0 0 0 PCNX 22990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 71575457 71575457 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCNX-91 NM_014982 exon34 c.G6438A p.V2146V GTTTGTGCCTTGT . 283 60 173 0 . 18 17 1 0 0 ACOT2 10965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 74040291 74040291 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACOT2-91 NM_006821 exon2 c.C843T p.P281P TCATCCCGAGGTT . 294 49 185 0 . 0 0 0 0 0 SAMD15 161394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 77845328 77845328 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SAMD15-90 NM_001010860 exon1 c.C1567T p.R523W AAGGAACGGGTCT . 303 64 250 0 . 1 1 0 0 0 ZC3H14 79882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 89069362 89069362 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZC3H14-93 NM_001160104 exon12 c.C1705T p.L569L CACTTGCTGAGCA . 151 62 113 0 . 13 7 6 0 0 PSMC1 5700 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 90730133 90730137 + Frame_Shift_Del DEL TTTCA TTTCA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 TTTCA TTTCA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PSMC1-90 NM_002802 exon5 c.407_411del p.136_137del GCATTCTTTCATT . 285 62 194 0 . 0 0 0 0 0 PPP4R4 57718 broad.mit.edu;ucsc.edu 37 14 94741742 94741742 + Silent SNP C C T rs114442446 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PPP4R4-94 NM_058237 exon24 c.C2481T p.S827S CAGTAGCGTTCCA . 209 32 132 2 C|0.999;A|0.001 0 0 0 0 0 SYNE3 161176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95884311 95884311 + Missense_Mutation SNP G G A rs142276866 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_152592 exon17 c.C2780T p.A927V GGGAGCGCCACAC . 182 81 41 0 G|1.000;A|0.000 0 0 0 0 0 DEGS2 123099 hgsc.bcm.edu 37 14 100615855 100615855 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DEGS2-90 NM_206918 exon2 c.C275T p.S92L TTGTGCGAGATGT . 39 4 0 0 . 0 0 0 0 0 ZNF839 55778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102793112 102793112 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF839-91 NM_018335 exon2 c.C1079T p.T360M GGTGCACGGAGGA . 145 68 62 0 . 3 1 2 0 0 PPP1R13B 23368 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 104205313 104205313 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PPP1R13B-227 NM_015316 exon13 c.C2640T p.H880H CAGCCCGTGCCCC . 160 82 103 0 . 21 6 15 0 0 KIF26A 26153 hgsc.bcm.edu 37 14 104642489 104642489 + Missense_Mutation SNP G G T rs117573425 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIF26A-24 NM_015656 exon12 c.G3364T p.A1122S TGCACTGCCGACA . 22 17 0 0 G|0.982;T|0.018 9 5 4 0 0 CASC5 57082 bcgsc.ca 37 15 40914772 40914772 + Silent SNP C C T rs11855334 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CASC5-660 NM_170589 exon11 c.C2388T p.V796V CACTGTCGTCATT . 199 7 272 4 C|0.632;T|0.368 0 0 0 0 0 LACTB 114294 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 63433897 63433897 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LACTB-90 NM_032857 exon6 c.1537delC p.P513fs AAGGTTCCCCCAA . 76 32 93 0 . 0 0 0 0 0 ACSBG1 23205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 78466041 78466041 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACSBG1-91 NM_015162 exon13 c.C1983T p.I661I CTCTTCGATGGCC . 78 35 105 0 . 0 0 0 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79051801 79051801 + Missense_Mutation SNP C C A rs201472223 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADAMTS7-226 NM_014272 exon24 c.G5023T p.A1675S AGGGGGCGCCGTG . 8 5 0 0 . 21 21 0 0 0 AP3B2 8120 bcgsc.ca 37 15 83328678 83328678 + Missense_Mutation SNP C C T rs200505090 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AP3B2-94 NM_004644 exon25 c.G3017A p.R1006Q TCACTCCGACAGG . 131 38 149 2 . 2 2 0 0 0 BNC1 646 broad.mit.edu 37 15 83932513 83932513 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BNC1-93 NM_001717 exon4 c.C1490T p.T497M GCAGGCGTGGCTG . 219 6 282 0 . 0 0 0 0 0 ACAN 176 bcgsc.ca 37 15 89398631 89398631 + Missense_Mutation SNP T T A rs938609 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACAN-25 NM_001135 exon12 c.T2815A p.S939T CTGCCCTCTGGAG . 80 4 110 0 T|0.540;A|0.460 0 0 0 0 0 POLG 5428 bcgsc.ca 37 15 89868870 89868870 + Missense_Mutation SNP G G A rs113994096 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POLG-228 NM_002693 exon10 c.C1760T p.P587L GGGCCCGGGGTCC . 82 5 68 0 G|0.998;A|0.002 5 5 0 0 0 CRTC3 64784 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 91184391 91184391 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CRTC3-393 NM_022769 exon14 c.G1611A p.P537P AAGCCCGTATTCC . 110 45 130 0 . 7 4 3 0 0 SSTR5 6755 hgsc.bcm.edu 37 16 1129594 1129594 + Silent SNP G G A rs201314089 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SSTR5-522 NM_001172560 exon2 c.G726A p.S242S GCGCTCGGAGCGG . 55 14 7 0 G|0.999;A|0.001 0 0 0 0 0 BAIAP3 8938 broad.mit.edu;bcgsc.ca 37 16 1393394 1393394 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BAIAP3-91 NM_003933 exon15 c.G1371A p.L457L CCACAGGCACTGG . 264 132 60 1 . 0 0 0 0 0 IGFALS 3483 hgsc.bcm.edu 37 16 1841949 1841949 + Missense_Mutation SNP C C T rs199977317 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IGFALS-90 NM_001146006 exon2 c.G584A p.R195H CTCAGACGGTTGT . 109 74 6 0 C|0.999;T|0.000 0 0 0 0 0 TBL3 10607 hgsc.bcm.edu 37 16 2025627 2025627 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TBL3-90 NM_006453 exon10 c.A903G p.A301A CCTGGCACACACC . 37 20 0 0 . 8 5 3 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2059674 2059674 + Missense_Mutation SNP T T C rs71384660 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF598-432 NM_178167 exon2 c.A74G p.E25G CCGCCTTCCCGCT . 4 4 0 0 T|0.007;C|0.993 2 0 2 0 0 PRSS27 83886 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2763556 2763556 + Missense_Mutation SNP C C T rs149957191 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRSS27-91 NM_031948 exon5 c.G652A p.E218K CCTCCTCGAAGCC . 358 134 211 1 C|0.999;T|0.001 4 4 0 0 0 HMOX2 3163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 4558130 4558130 + Silent SNP C C T rs186971432 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HMOX2-90 NM_001127205 exon4 c.C621T p.N207N GATGAACGCCCTG . 724 294 497 2 C|0.999;T|0.000 64 36 28 0 0 RRN3 54700 broad.mit.edu 37 16 15188060 15188060 + Missense_Mutation SNP G G A rs201504364 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RRN3-91 NM_018427 exon1 c.C31T p.P11S CTCCCGGCAAACG . 303 13 87 0 G|0.997;A|0.003 4 4 0 0 0 RRN3 54700 broad.mit.edu 37 16 15188066 15188066 + Missense_Mutation SNP G G A rs200006712 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RRN3-91 NM_018427 exon1 c.C25T p.R9C GCAAACGCGTGTG . 285 14 75 0 G|0.997;A|0.003 2 2 0 0 0 SMG1 23049 broad.mit.edu 37 16 18887699 18887699 + Missense_Mutation SNP T T C rs1136817 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SMG1-1160 NM_015092 exon13 c.A1637G p.H546R ACAGCATGGGCTA . 96 10 76 1 T|0.640;C|0.360 15 12 3 0 0 SYT17 51760 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 19194969 19194969 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYT17-69 NM_016524 exon5 c.G451A p.D151N AACCCCGACGACT . 299 144 146 2 . 6 0 6 0 0 ARHGAP17 55114 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24950845 24950845 + Missense_Mutation SNP C C T rs145791095 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARHGAP17-227 NM_001006634 exon17 c.G1564A p.A522T GGAAAGCGGGGGA . 110 53 51 0 C|0.997;T|0.003 4 3 1 0 0 LCMT1 51451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 25151548 25151548 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LCMT1-22 NM_016309 exon4 c.G384A p.T128T TGTCACGAGAAAG . 142 62 130 0 . 16 11 5 0 0 KIAA0556 23247 broad.mit.edu;bcgsc.ca 37 16 27782957 27782957 + Silent SNP G G A rs202124589 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIAA0556-141 NM_015202 exon22 c.G4182A p.P1394P GGCACCGCTGATG . 156 31 102 1 G|0.999;A|0.000 0 0 0 0 0 ATXN2L 11273 hgsc.bcm.edu;broad.mit.edu 37 16 28847350 28847350 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATXN2L-92 NM_148414 exon22 c.2992delG p.G998fs AGTCATGGGGGGC . 35 12 7 0 . 0 0 0 0 0 TAOK2 9344 broad.mit.edu;bcgsc.ca 37 16 29994575 29994575 + Silent SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TAOK2-521 NM_004783 exon12 c.T1182C p.P394P AGGCCCTGAAGCC . 71 6 39 0 . 11 11 0 0 0 INO80E 283899 hgsc.bcm.edu 37 16 30016621 30016621 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INO80E-91 NM_173618 exon7 c.C593T p.T198I TCGGGACAACCCT . 28 14 0 0 . 22 13 9 0 0 PRSS8 5652 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 31144689 31144689 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002773 exon3 c.124delC p.Q42fs GTGCTTGGGGGGC . 240 130 59 0 . 0 0 0 0 0 ABCC12 94160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 48155704 48155704 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ABCC12-93 NM_033226 exon11 c.C1635T p.Y545Y TGAAACGTAGGCC . 176 93 132 0 . 0 0 0 0 0 LONP2 83752 hgsc.bcm.edu 37 16 48278491 48278491 + Silent SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LONP2-90 NM_031490 exon1 c.T192C p.P64P CACGCCTGACCCC . 35 11 2 0 . 2 2 0 0 0 SNX20 124460 hgsc.bcm.edu 37 16 50707433 50707433 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SNX20-23 NM_182854 exon4 c.G835A p.A279T CCAGCGCGTAGGC . 94 60 6 0 . 0 0 0 0 0 NOD2 64127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50744753 50744753 + Missense_Mutation SNP C C T rs104895427 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NOD2-231 NM_022162 exon4 c.C931T p.R311W CTGCAGCGGCTGC . 104 54 46 0 C|0.999;T|0.001 0 0 0 0 0 RANBP10 57610 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67765468 67765468 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RANBP10-227 NM_020850 exon7 c.G796A p.V266M GATGCACGAGGTA . 275 29 136 0 . 2 2 0 0 0 PDPR 55066 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 70190402 70190402 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDPR-135 NM_017990 exon19 c.G2260A p.A754T CGCGACGCCCTCC . 230 30 128 0 . 0 0 0 0 0 VAC14 55697 broad.mit.edu;bcgsc.ca 37 16 70732653 70732653 + Missense_Mutation SNP G G A rs145938865 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VAC14-227 NM_018052 exon15 c.C1723T p.R575W CCTCCCGCAGCAG . 287 10 153 1 G|0.999;A|0.001 19 19 0 0 0 DHODH 1723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 72057466 72057466 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DHODH-227 NM_001361 exon8 c.C1067T p.T356M TGTACACGGCCCT . 62 24 37 0 . 12 6 6 0 0 CTRB2 440387 broad.mit.edu;bcgsc.ca 37 16 75238144 75238144 + Missense_Mutation SNP C C T rs201069805 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CTRB2-68 NM_001025200 exon7 c.G707A p.R236H CAGGTGCGGCTGC . 248 127 46 1 . 0 0 0 0 0 TMEM231 79583 broad.mit.edu;bcgsc.ca 37 16 75575345 75575345 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001077416 exon5 c.G832A p.V278I TCAGGACGGTGGT . 136 52 108 1 . 1 1 0 0 0 MBTPS1 8720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84129260 84129260 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MBTPS1-92 NM_003791 exon4 c.G572A p.R191H ACCTGGCGCGGGA . 131 22 77 0 . 1 1 0 0 0 ZNF469 84627 broad.mit.edu;bcgsc.ca 37 16 88496389 88496389 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001127464 exon1 c.C2511T p.D837D GGATGACGCCAAG . 545 25 145 0 . 0 0 0 0 0 IL17C 27189 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 88706308 88706308 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IL17C-90 NM_013278 exon3 c.G422A p.R141H CGGGCCGCGAGAC . 47 25 9 0 . 1 0 1 0 0 ACSF3 197322 ucsc.edu 37 16 89167094 89167094 + Missense_Mutation SNP T T C rs7188200 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACSF3-68 NM_174917 exon3 c.T5C p.L2P CAATGCTGCCCCA . 46 14 10 0 T|0.381;C|0.619 1 1 0 0 0 ANKRD11 29123 broad.mit.edu 37 16 89345709 89345709 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANKRD11-139 NM_001256183 exon9 c.C7241T p.T2414M GCCAGCGTCTGCT . 301 153 58 2 . 34 16 18 0 0 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89352532 89352532 + Silent SNP C C T rs149525788 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANKRD11-139 NM_001256183 exon8 c.G807A p.T269T CAGCGGCGTCTCG . 158 41 104 0 C|1.000;G|0.000 16 8 8 0 0 MC1R 4157 hgsc.bcm.edu 37 16 89986317 89986317 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_002386 exon1 c.C651T p.H217H CCAGCACGCCCAG . 67 36 4 0 . 90 48 42 0 0 RPH3AL 9501 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 169309 169309 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RPH3AL-91 NM_001190413 exon4 c.C253T p.R85W CATTCCGCCTCAT . 79 65 86 1 . 0 0 0 0 0 MYO1C 4641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 1371412 1371412 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYO1C-90 NM_001080779 exon28 c.G2766A p.A922A AGGCACCGCATAC . 88 43 60 0 . 0 0 0 0 0 GSG2 83903 hgsc.bcm.edu 37 17 3627663 3627663 + Missense_Mutation SNP G G A rs55991903 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GSG2-297 NM_031965 exon1 c.G434A p.R145H CCGGCCGCCTCAG . 18 18 0 0 G|0.993;A|0.007 1 0 1 0 0 VMO1 284013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4688850 4688850 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VMO1-69 NM_182566 exon3 c.C416T p.A139V TTGTTCGCTGCTG . 106 47 43 0 . 2 2 0 0 0 ASGR1 432 hgsc.bcm.edu 37 17 7077106 7077106 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ASGR1-153 NM_001671 exon9 c.G748A p.G250R CTCCTCCGAGCCC . 41 37 3 0 . 1 0 1 0 0 SPEM1 374768 broad.mit.edu;bcgsc.ca 37 17 7324353 7324353 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPEM1-90 NM_199339 exon3 c.G359A p.R120H CCACACGCTGTGC . 151 7 136 0 . 0 0 0 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 bycluster TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TP53-70225 NM_000546 exon8 c.C817T p.R273C AAACACGCACCTC . 79 74 119 0 . 2 0 2 0 0 ALOX12B 242 hgsc.bcm.edu;bcgsc.ca 37 17 7982767 7982767 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ALOX12B-226 NM_001139 exon8 c.1018delC p.L340fs GGCAGAGGGGGGC . 227 196 47 1 . 0 0 0 0 0 MYH10 4628 ucsc.edu;bcgsc.ca;mdanderson.org 37 17 8424545 8424545 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYH10-92 NM_001256012 exon18 c.C2016T p.S672S ATATGCGGAGCCA . 155 75 201 2 . 0 0 0 0 0 ADPRM 56985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10614312 10614312 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_020233 exon4 c.G880A p.V294I TACCACGTCAACC . 132 18 171 0 . 3 3 0 0 0 DNAH9 1770 bcgsc.ca 37 17 11532835 11532835 + Silent SNP A A G rs9895535 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAH9-168 NM_001372 exon7 c.A1452G p.E484E GCATGAAGAATTT . 98 6 76 0 A|0.589;G|0.411 0 0 0 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 11778483 11778483 + Missense_Mutation SNP C C T rs145738103 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAH9-168 NM_001372 exon53 c.C10460T p.T3487M GGGTCACGCAGAT . 77 5 95 0 C|0.999;T|0.001 0 0 0 0 0 DNAH9 1770 broad.mit.edu 37 17 11845741 11845741 + Missense_Mutation SNP G G A rs149812805 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAH9-168 NM_001372 exon67 c.G12782A p.R4261Q GTGGCCGGATGAA . 114 4 158 1 G|1.000;A|0.000 0 0 0 0 0 CCDC144C 348254 broad.mit.edu;bcgsc.ca 37 17 20224697 20224697 + RNA SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . ACGCCACGAGGAA . 128 11 118 1 . 0 0 0 0 0 LGALS9B 284194 broad.mit.edu 37 17 20363687 20363687 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LGALS9B-23 NM_001042685 exon2 c.G109A p.V37I TGAGAACGGCCCC . 795 15 677 0 . 0 0 0 0 0 KCNJ18 100134444 ucsc.edu 37 17 21319943 21319943 + Missense_Mutation SNP A A G rs5021699 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001194958 exon3 c.A1289G p.E430G GACGGGAGTCAGA . 58 19 16 0 A|0.600;G|0.400 0 0 0 0 0 MIR144 406936 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27188561 27188561 + RNA SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . GTGCCCGGACTAG . 104 36 106 0 . 0 0 0 0 0 LHX1 3975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35298051 35298051 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LHX1-92 NM_005568 exon3 c.G542A p.R181Q AGCGGCGGGGACC . 194 172 79 0 . 0 0 0 0 0 IKZF3 22806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37934013 37934013 + Silent SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IKZF3-971 NM_012481 exon7 c.G717T p.A239A TGCCTCCGCACTT . 105 42 95 0 . 0 0 0 0 0 RAPGEFL1 51195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38345578 38345578 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RAPGEFL1-229 NM_016339 exon6 c.C447T p.P149P GGAGCCCGCGGGG . 58 39 110 0 . 3 1 2 0 0 SMARCE1 6605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38786977 38786977 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SMARCE1-227 NM_003079 exon10 c.C1016T p.P339L TCCATCGGAATGT . 71 63 121 0 . 0 0 0 0 0 KRT33B 3884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39521212 39521212 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRT33B-90 NM_002279 exon6 c.C916T p.R306C TGTAGCGGGCCTC . 107 104 83 0 . 0 0 0 0 0 KRT31 3881 bcgsc.ca 37 17 39551197 39551197 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRT31-90 NM_002277 exon6 c.C1000T p.R334W TCTGCCGCTCCAG . 125 11 126 2 . 0 0 0 0 0 KRT32 3882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39623234 39623234 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRT32-90 NM_002278 exon1 c.G344A p.R115Q AGCTGCCGCACCC . 86 38 89 0 . 0 0 0 0 0 KRT14 3861 broad.mit.edu 37 17 39743071 39743071 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRT14-91 NM_000526 exon1 c.C16T p.R6C ACTGGCGGCTGCA . 39 4 24 0 . 0 0 0 0 0 KRT17 3872 broad.mit.edu;bcgsc.ca 37 17 39775873 39775873 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRT17-92 NM_000422 exon8 c.C1272T p.R424R CTGCTCGCGGGAG . 707 20 493 0 . 3 3 0 0 0 STAT5B 6777 hgsc.bcm.edu;bcgsc.ca 37 17 40364022 40364023 + Frame_Shift_Del DEL AC AC - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 AC AC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . STAT5B-850 NM_012448 exon13 c.1659_1660del p.553_554del ACCAGGACACAGA . 218 197 303 3 . 0 0 0 0 0 CNTNAP1 8506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40838076 40838076 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CNTNAP1-525 NM_003632 exon6 c.C817T p.R273C TTTGGCCGCGATG . 164 76 187 0 . 1 0 1 0 0 WNK4 65266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40948205 40948205 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WNK4-336 NM_032387 exon17 c.C3496T p.R1166W TACAGCCGGCTGG . 52 47 21 0 . 2 0 2 0 0 AOC3 8639 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 41004636 41004636 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AOC3-516 NM_003734 exon1 c.C1276T p.R426C ACAATACGTGATG . 168 9 196 0 . 3 3 0 0 0 HDAC5 10014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42170066 42170066 + Silent SNP G G A rs199980075 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HDAC5-227 NM_001015053 exon7 c.C753T p.D251D GAAGTCGTCTCGA . 69 60 81 0 G|0.999;A|0.000 8 0 8 0 0 TTLL6 284076 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 46878650 46878650 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TTLL6-90 NM_001130918 exon5 c.G578A p.R193H AAAAAGCGGAAAT . 122 46 183 1 . 1 0 1 0 0 ZNF652 22834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47395005 47395005 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF652-91 NM_001145365 exon2 c.G83A p.R28H CCACGACGGCTAT . 218 120 254 0 . 0 0 0 0 0 YPEL2 388403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 57430826 57430826 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . YPEL2-90 NM_001005404 exon2 c.G56A p.R19Q GCCACCGGACCTA . 123 112 149 0 . 0 0 0 0 0 STRADA 92335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 61780974 61780974 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . STRADA-547 NM_001003787 exon13 c.C1281T p.D427D CCAATCGTCCACC . 86 23 132 0 . 15 11 4 0 0 GRIN2C 2905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72843589 72843589 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRIN2C-228 NM_000835 exon9 c.C1859T p.P620L CCCCGCGGGTTCT . 114 43 138 0 . 22 7 15 0 0 ITGB4 3691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73750779 73750779 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ITGB4-227 NM_000213 exon34 c.G4441A p.V1481M CACCGCGTGCTAA . 164 151 178 1 . 1 0 1 0 0 ZACN 353174 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 74077421 74077421 + Missense_Mutation SNP G G A rs143316623 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZACN-90 NM_180990 exon6 c.G607A p.V203I GAATACGTAGTTT . 195 14 221 0 G|0.998;A|0.002 84 73 11 0 0 TNRC6C 57690 bcgsc.ca 37 17 76045635 76045635 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TNRC6C-24 NM_018996 exon4 c.G492A p.T164T ACAAACGTCCACT . 42 37 73 2 . 0 0 0 0 0 TMC6 11322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76118720 76118720 + Missense_Mutation SNP C C T rs150505551 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMC6-90 NM_001127198 exon10 c.G1193A p.R398H TGGAGGCGGGAGG . 120 38 61 0 C|1.000;T|0.000 1 1 0 0 0 CYTH1 9267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76695039 76695039 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CYTH1-228 NM_017456 exon8 c.G562A p.V188I AGAGGACGTAACA . 104 48 144 0 . 0 0 0 0 0 RPTOR 57521 bcgsc.ca 37 17 78599562 78599562 + Silent SNP C C G rs17848685 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RPTOR-847 NM_001163034 exon2 c.C234G p.T78T GAAGACCACGCCC . 170 7 147 0 C|0.836;G|0.164 0 0 0 0 0 BAIAP2 10458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79031712 79031712 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BAIAP2-90 NM_001144888 exon3 c.C162T p.D54D CTTTGACGCCCTG . 23 20 30 0 . 5 2 3 0 0 AATK 9625 hgsc.bcm.edu 37 17 79096115 79096115 + Missense_Mutation SNP C C T rs61738821 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AATK-933 NM_001080395 exon11 c.G1621A p.A541T GGCCGGCGGCGGG . 4 4 0 0 C|0.850;T|0.150 0 0 0 0 0 SLC38A10 124565 hgsc.bcm.edu 37 17 79219637 79219637 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC38A10-70 NM_001037984 exon16 c.C3079A p.P1027T CCCCCGGGACAGC . 96 90 1 0 . 53 5 47 1 0 DUS1L 64118 bcgsc.ca;mdanderson.org 37 17 80019852 80019852 + Missense_Mutation SNP G G A rs138482688 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DUS1L-91 NM_022156 exon6 c.C518T p.T173M TGCACCGTCAGCA . 63 59 41 1 G|1.000;A|0.000 0 0 0 0 0 EMILIN2 84034 ucsc.edu;bcgsc.ca;mdanderson.org 37 18 2891551 2891551 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EMILIN2-93 NM_032048 exon4 c.C1426T p.R476W ACCCTTCGGGGCG . 117 48 152 2 . 0 0 0 0 0 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 29104699 29104699 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DSG2-563 NM_001943 exon8 c.G862A p.V288I GTCAACGTAGAAG . 173 137 250 0 . 0 0 0 0 0 SLC25A52 147407 broad.mit.edu;bcgsc.ca 37 18 29340269 29340269 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001034172 exon1 c.C386T p.A129V TGGGTTGCAAACT . 197 8 238 0 . 1 1 0 0 0 EPG5 57724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 43529494 43529494 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EPG5-580 NM_020964 exon5 c.C1453T p.R485X GGCATCGAAGAAT . 61 24 104 0 . 0 0 0 0 0 MBD1 4152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 47796100 47796100 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MBD1-228 NM_001204136 exon16 c.C1867A p.P623T CTCGTGGGTTCCA . 144 51 177 0 . 46 17 29 0 0 CNDP2 55748 bcgsc.ca 37 18 72178161 72178161 + Silent SNP T T C rs2278159 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CNDP2-93 NM_018235 exon6 c.T570C p.Y190Y GGACTATGTCTGC . 231 7 266 0 T|0.825;C|0.175 2 2 0 0 0 SHC2 25759 hgsc.bcm.edu;broad.mit.edu 37 19 422360 422360 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SHC2-392 NM_012435 exon11 c.1406delC p.P469fs CGGGTAGGGGGGC . 148 33 7 0 . 0 0 0 0 0 SHC2 25759 hgsc.bcm.edu 37 19 436677 436677 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SHC2-392 NM_012435 exon5 c.G727A p.A243T GGTTGGCGATGAC . 156 39 6 0 . 0 0 0 0 0 CFD 1675 hgsc.bcm.edu 37 19 863169 863169 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CFD-514 NM_001928 exon5 c.693delC p.N231fs CGGCAACCGCAAG . 27 14 1 0 . 0 0 0 0 0 GRIN3B 116444 hgsc.bcm.edu 37 19 1004687 1004687 + Missense_Mutation SNP T T C rs12978900 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRIN3B-90 NM_138690 exon3 c.T1187C p.L396S TGGACTTGGAACC . 15 5 1 0 T|0.967;C|0.033 0 0 0 0 0 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1043419 1043419 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ABCA7-98 NM_019112 exon9 c.G877A p.G293R ATCCTCGGGAAGC . 330 65 148 0 . 2 2 0 0 0 C19orf24 55009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1277286 1277286 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C19orf24-90 NM_017914 exon2 c.G386A p.R129Q AGTCCCGGAATCT . 304 122 121 0 . 0 0 0 0 0 REEP6 92840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1496349 1496349 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . REEP6-90 NM_138393 exon4 c.C414T p.R138R TCAGCGCGTCGTG . 160 33 26 0 . 181 143 37 1 0 FZR1 51343 hgsc.bcm.edu 37 19 3532525 3532525 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FZR1-227 NM_001136198 exon10 c.1119delG p.S373fs GGCCTCGGGGGGC . 259 125 28 1 . 0 0 0 0 0 PTPRS 5802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 5206812 5206812 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PTPRS-357 NM_002850 exon38 c.C5820T p.L1940L GCTTCCGAGGTAC . 221 51 114 0 . 103 77 26 0 0 VAV1 7409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6833562 6833562 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VAV1-1276 NM_005428 exon17 c.G1634A p.R545H GCTACCGCTGCCA . 63 27 52 0 . 0 0 0 0 0 INSR 3643 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7267587 7267587 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INSR-1381 NM_000208 exon2 c.C421T p.R141W AACCCCGGGTGAT . 466 122 323 3 . 1 0 1 0 0 CAMSAP3 57662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7682925 7682925 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001080429 exon19 c.C3813T p.G1271G GAAGGGCGGCGGC . 80 9 31 0 . 120 112 8 0 0 CD320 51293 hgsc.bcm.edu 37 19 8369919 8369921 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 CTC CTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CD320-90 NM_016579 exon2 c.262_264del p.88_88del ACTGCACTCCTCC . 50 21 2 1 . 0 0 0 0 0 CD320 51293 hgsc.bcm.edu 37 19 8373152 8373152 + Missense_Mutation SNP T T C rs2232775 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CD320-90 NM_001165895 exon1 c.A23G p.Q8R CCAACCTGCGCCA . 10 10 0 0 T|0.852;C|0.148 24 1 23 0 0 ZNF414 84330 hgsc.bcm.edu 37 19 8576670 8576670 + Silent SNP C C T rs7175 byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF414-90 NM_032370 exon5 c.G705A p.P235P CGGGAACGGCAGG . 13 9 0 0 C|0.788;T|0.212 8 1 7 0 0 ACTL9 284382 hgsc.bcm.edu 37 19 8807994 8807994 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ACTL9-154 NM_178525 exon1 c.G1058A p.R353H CGGAAGCGACCCT . 97 28 5 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9049154 9049154 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MUC16-566 NM_024690 exon5 c.C32477T p.T10826M GGATGCGTGACCA . 418 94 280 0 . 0 0 0 0 0 COL5A3 50509 hgsc.bcm.edu 37 19 10077378 10077378 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . COL5A3-99 NM_015719 exon63 c.C4503T p.F1501F TGGGACGAAGCGC . 21 4 2 0 . 1 1 0 0 0 EIF3G 8666 broad.mit.edu 37 19 10227826 10227826 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EIF3G-68 NM_003755 exon6 c.339delC p.P113fs GGGTCCGGGGGGG . 159 10 79 0 . 0 0 0 0 0 TYK2 7297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10476463 10476463 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TYK2-1009 NM_003331 exon7 c.G741A p.P247P TCGGCCCGGCTGG . 262 146 36 0 . 16 10 6 0 0 FBXW9 84261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12805414 12805414 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FBXW9-227 NM_032301 exon3 c.C672T p.T224T CTCATGGGTACTA . 254 126 143 0 . 0 0 0 0 0 TNPO2 30000 broad.mit.edu;bcgsc.ca 37 19 12816346 12816346 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TNPO2-227 NM_013433 exon16 c.G1823A p.R608H ACACAGCGCTGGT . 532 12 283 1 . 25 23 2 0 0 CACNA1A 773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13356010 13356010 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA1A-67 NM_001127221 exon31 c.G4939A p.V1647M CAGTCACGAGGAT . 176 83 111 0 . 0 0 0 0 0 CACNA1A 773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13370425 13370425 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA1A-67 NM_001127221 exon27 c.G4344T p.W1448C CAGAGCCCACAGC . 221 115 175 0 . 0 0 0 0 0 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15276714 15276714 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NOTCH3-855 NM_000435 exon30 c.C5551T p.R1851C CAGCACGGGCATA . 239 32 68 0 . 2 2 0 0 0 NOTCH3 4854 ucsc.edu 37 19 15292437 15292437 + Silent SNP T T C rs1043997 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NOTCH3-855 NM_000435 exon17 c.A2742G p.P914P GTAGCCTGGCGGG . 419 174 18 4 T|0.238;C|0.762 1 1 0 0 0 OR10H1 26539 bcgsc.ca 37 19 15918802 15918802 + Missense_Mutation SNP C C G rs4808383 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OR10H1-68 NM_013940 exon1 c.G46C p.G16R AGAAGCCGACGAG . 322 8 177 1 C|0.832;G|0.168 0 0 0 0 0 C19orf44 84167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16611814 16611814 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C19orf44-90 NM_032207 exon2 c.G211A p.G71R GTGCTCGGGAGTG . 109 59 77 0 . 0 0 0 0 0 SIN3B 23309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16986968 16986968 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SIN3B-228 NM_015260 exon16 c.G2791A p.V931I CGCTGCGTCCGCG . 265 137 55 0 . 45 21 24 0 0 MYO9B 4650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17283599 17283599 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYO9B-67 NM_001130065 exon13 c.G1967A p.R656Q ACATGCGGCCAGA . 144 29 56 0 . 3 3 0 0 0 ANO8 57719 hgsc.bcm.edu 37 19 17435647 17435647 + Silent SNP G G A rs150818557 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANO8-93 NM_020959 exon17 c.C3210T p.G1070G CTGCCCGCCCGCC . 58 35 0 0 G|0.998;A|0.002 28 17 11 0 0 ANO8 57719 broad.mit.edu;bcgsc.ca 37 19 17441307 17441307 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANO8-93 NM_020959 exon9 c.C1000T p.R334X TACGTCGCACGCC . 186 9 49 0 . 3 3 0 0 0 COLGALT1 79709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17679361 17679361 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_024656 exon5 c.G668A p.R223Q GCAAGCGAGACCG . 240 50 144 0 . 1 0 1 0 0 PIK3R2 5296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 18279340 18279340 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PIK3R2-1311 NM_005027 exon14 c.A1792G p.K598E GGGATTAAAAATG . 62 31 55 0 . 48 27 20 0 1 ISYNA1 51477 broad.mit.edu 37 19 18546481 18546481 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ISYNA1-92 NM_016368 exon9 c.C1146T p.V382V CTTGATGACCACC . 73 3 41 0 . 12 12 0 0 0 FKBP8 23770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 18650417 18650417 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FKBP8-227 NM_012181 exon3 c.C406T p.R136W GCACCCGTGTGCC . 173 80 19 0 . 144 85 59 0 0 NCAN 1463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19360612 19360612 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NCAN-94 NM_004386 exon15 c.C3858A p.H1286Q CCACCACCACCAA . 365 102 259 0 . 0 0 0 0 0 ZNF429 353088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 21720662 21720662 + Missense_Mutation SNP A A C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF429-516 NM_001001415 exon4 c.A1807C p.N603H GCTTTTAATCGGT . 49 13 47 0 . 2 1 1 0 0 GPATCH1 55094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33616095 33616095 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPATCH1-91 NM_018025 exon18 c.G2606A p.R869Q ACAGGCGGAAGAA . 183 39 101 0 . 0 0 0 0 0 MLL4 8085 broad.mit.edu;bcgsc.ca 37 19 36217156 36217156 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MLL4-697 NM_014727 exon14 c.G3905A p.R1302H GTGTGCGCTGTAA . 499 18 303 1 . 14 14 0 0 0 MLL4 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36222925 36222925 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MLL4-697 NM_014727 exon27 c.G5554A p.A1852T GGCAGCGCCCCTC . 73 18 35 0 . 30 18 12 0 0 LRFN3 79414 hgsc.bcm.edu 37 19 36430696 36430696 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRFN3-90 NM_024509 exon2 c.C369T p.G123G ACTGGGCGAGGGC . 17 10 1 0 . 0 0 0 0 0 ZNF781 163115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38160733 38160733 + Missense_Mutation SNP C C T rs12460961 byhapmap TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF781-90 NM_152605 exon4 c.G317A p.R106Q TGATGTCGAATAA . 66 34 46 0 C|1.000;|0.000 4 1 3 0 0 SIPA1L3 23094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38591715 38591715 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SIPA1L3-91 NM_015073 exon6 c.C1878T p.G626G GGTGGGCATCCTC . 177 32 103 0 . 0 0 0 0 0 DPF1 8193 hgsc.bcm.edu 37 19 38713189 38713189 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DPF1-90 NM_001135155 exon2 c.G270A p.P90P GGTACCCGGCCCG . 76 44 3 0 . 0 0 0 0 0 RYR1 6261 broad.mit.edu 37 19 38966036 38966036 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RYR1-100 NM_001042723 exon29 c.C4239T p.D1413D TCACGACGTGGTG . 212 6 53 0 . 0 0 0 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu 37 19 38993359 38993359 + Silent SNP G G A rs201827284 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RYR1-100 NM_001042723 exon48 c.G7827A p.S2609S CATGTCGCTCTGC . 82 37 15 0 G|0.999;A|0.000 0 0 0 0 0 PAK4 10298 hgsc.bcm.edu 37 19 39663757 39663757 + Missense_Mutation SNP G G A rs56099436 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PAK4-957 NM_001014832 exon3 c.G404A p.R135Q GCAGCCGAGGCCG . 10 7 0 0 G|0.989;A|0.011 14 6 8 0 0 SYCN 342898 hgsc.bcm.edu 37 19 39694831 39694831 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYCN-68 NM_001080468 exon1 c.G64A p.A22T GGCAGGCGCCCTG . 40 19 2 0 . 0 0 0 0 0 LRFN1 57622 hgsc.bcm.edu 37 19 39805167 39805167 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRFN1-70 NM_020862 exon1 c.C810T p.D270D TAAGTCGTCCTCG . 58 27 3 0 . 5 1 4 0 0 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40412003 40412003 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FCGBP-98 NM_003890 exon7 c.G3625A p.G1209R CACATCCGGGGCC . 169 21 14 0 . 0 0 0 0 0 FCGBP 8857 hgsc.bcm.edu 37 19 40430566 40430566 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FCGBP-98 NM_003890 exon3 c.C1377T p.G459G CTTCCCGCCTACC . 40 14 1 0 . 0 0 0 0 0 B3GNT8 374907 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41931793 41931793 + Silent SNP G G A rs147647792 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . B3GNT8-90 NM_198540 exon3 c.C891T p.F297F ACCTTCGAAGAAG . 166 56 59 1 G|1.000;A|0.000 1 1 0 0 0 IRGC 56269 hgsc.bcm.edu 37 19 44223766 44223766 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IRGC-70 NM_019612 exon2 c.C1056T p.D352D GTCCGACGGCGCC . 84 48 1 0 . 0 0 0 0 0 ZNF296 162979 broad.mit.edu 37 19 45578983 45578983 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF296-90 NM_145288 exon2 c.G436A p.G146S CCTGGCCGCGGCT . 178 5 88 0 . 0 0 0 0 0 KLC3 147700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 45852157 45852157 + Missense_Mutation SNP G G A rs190310418 by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KLC3-91 NM_177417 exon7 c.G947A p.R316H GCCAGCGCGCTTT . 122 29 47 0 G|0.999;A|0.000 7 5 2 0 0 EML2 24139 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 46129994 46129994 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EML2-154 NM_001193268 exon11 c.1313delG p.G438fs AAGCTGCCCCCCT . 130 50 77 0 . 0 0 0 0 0 DMWD 1762 hgsc.bcm.edu 37 19 46289388 46289388 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DMWD-90 NM_004943 exon3 c.1366delC p.L456fs GGGCCAGGGGGGG . 143 69 15 1 . 0 0 0 0 0 FKRP 79147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47259950 47259950 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FKRP-91 NM_024301 exon4 c.G1243A p.V415M TTGCACGTGGACC . 123 55 34 0 . 15 4 11 0 0 ZC3H4 23211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47571027 47571027 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZC3H4-74 NM_015168 exon15 c.C2498T p.P833L GAAGCCGGGGGTC . 83 42 25 0 . 7 3 4 0 0 DHX34 9704 broad.mit.edu;bcgsc.ca 37 19 47856391 47856391 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DHX34-231 NM_014681 exon2 c.C104T p.T35M CAGAGACGCGTCG . 199 6 133 0 . 7 7 0 0 0 GLTSCR1 29998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48204610 48204610 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GLTSCR1-48 NM_015711 exon15 c.G3621A p.S1207S CCGCTCGCTCGGC . 98 36 27 0 . 33 14 19 0 0 LMTK3 114783 broad.mit.edu;bcgsc.ca 37 19 49013775 49013775 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LMTK3-1357 NM_001080434 exon3 c.G238A p.A80T TGAAGGCCAGCAG . 238 9 166 0 . 0 0 0 0 0 RASIP1 54922 hgsc.bcm.edu 37 19 49232226 49232226 + Missense_Mutation SNP G G A rs2287922 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RASIP1-228 NM_017805 exon5 c.C1801T p.R601C CCAGGCGGCCCAG . 5 5 0 0 G|0.738;A|0.262 6 2 4 0 0 BAX 581 hgsc.bcm.edu;bcgsc.ca 37 19 49458971 49458971 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BAX-1271 NM_004324 exon3 c.114delG p.M38fs GCGAATGGGGGGG . 290 119 158 1 . 0 0 0 0 0 PPFIA3 8541 broad.mit.edu 37 19 49641518 49641518 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PPFIA3-226 NM_003660 exon16 c.G1910A p.R637Q AGAGTCGGGTGTC . 189 5 120 1 . 5 5 0 0 0 ZNF473 25888 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50548675 50548675 + Silent SNP C C T rs146105171 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF473-91 NM_015428 exon5 c.C975T p.C325C CGAATGCGGCAAG . 235 113 144 1 C|1.000;T|0.000 5 1 4 0 0 ZNF836 162962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52658977 52658977 + Silent SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF836-46 NM_001102657 exon5 c.A1959G p.L653L ACGTGCTAGGCAT . 177 18 122 0 . 44 35 9 0 0 ZNF701 55762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53086056 53086056 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF701-90 NM_001172655 exon5 c.C942T p.C314C TGTATGCGGCAAG . 375 184 293 0 . 1 1 0 0 0 ZNF665 79788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53668192 53668192 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF665-70 NM_024733 exon4 c.T1551C p.N517N ACACTCATTACAC . 149 85 90 0 . 4 4 0 0 0 NLRP12 91662 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54314363 54314363 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NLRP12-211 NM_144687 exon3 c.G550A p.V184M TCCTCGCGTGTCC . 234 98 92 1 . 0 0 0 0 0 LILRB2 10288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54782326 54782326 + Missense_Mutation SNP C C T rs202223934 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LILRB2-91 NM_005874 exon7 c.G1046A p.R349Q AACTGCCGCCATG . 589 282 424 1 C|0.999;T|0.001 0 0 0 0 0 LILRB1 10859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55144512 55144512 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LILRB1-137 NM_001081637 exon7 c.C1004T p.T335M GCCCCACGGTGGC . 356 67 185 0 . 0 0 0 0 0 KIR2DL4 3805 hgsc.bcm.edu 37 19 55324635 55324635 + Silent SNP T T C rs649216 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIR2DL4-70 NM_001080772 exon6 c.C762C p.F254F CCTCTTTACCATC . 71 71 0 0 T|0.653;C|0.347 0 0 0 0 0 FAM71E2 284418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55872251 55872251 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001145402 exon7 c.G781A p.D261N TTCTGTCGGGGCG . 119 27 84 0 . 0 0 0 0 0 SBK2 646643 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56042650 56042650 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SBK2-68 NM_001101401 exon3 c.G316A p.E106K AGAACTCGTACAG . 173 43 20 1 . 0 0 0 0 0 FIZ1 84922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56105009 56105009 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FIZ1-90 NM_032836 exon3 c.G298A p.V100I TGTGGACGACCTA . 295 133 119 0 . 0 0 0 0 0 ZFP28 140612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 57066397 57066397 + Missense_Mutation SNP G G A rs139300625 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZFP28-91 NM_020828 exon8 c.G2243A p.R748H GTCATCGCAGAAG . 120 26 72 0 G|1.000;A|0.000 6 5 1 0 0 ZNF264 9422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57723746 57723746 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF264-92 NM_003417 exon4 c.C1281T p.F427F GCCCTTCGTGTGC . 157 25 98 0 . 2 2 0 0 0 ZNF805 390980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57765484 57765484 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001023563 exon4 c.G1297A p.G433R GAATGCGGAAAGG . 125 52 81 0 . 2 2 0 0 0 ZNF419 79744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58004983 58004983 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF419-90 NM_001098491 exon5 c.G1061A p.S354N TCTATAGCCACAA . 150 26 113 0 . 10 8 2 0 0 ZNF135 7694 broad.mit.edu 37 19 58578302 58578302 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF135-91 NM_007134 exon4 c.G522A p.T174T CTTCACGCCTGTG . 208 6 154 0 . 6 6 0 0 0 ZSCAN18 65982 broad.mit.edu 37 19 58600183 58600183 + Missense_Mutation SNP G G A rs73058515 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZSCAN18-90 NM_001145542 exon3 c.C593T p.A198V GAGCCCGCAGGGG . 89 45 43 2 G|1.000;T|0.000 6 3 3 0 0 TSSC1 7260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 3196229 3196229 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TSSC1-90 NM_003310 exon8 c.C945T p.D315D ATCGTCGTCTACC . 190 18 200 0 . 19 16 3 0 0 TRIM54 57159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27505759 27505759 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TRIM54-227 NM_187841 exon1 c.G160A p.V54I AACGACGTCTTCC . 133 119 170 1 . 0 0 0 0 0 FOSL2 2355 ucsc.edu;bcgsc.ca 37 2 28627094 28627094 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FOSL2-712 NM_005253 exon2 c.C223A p.P75T TCCAACCCATACC . 190 166 190 2 . 5 1 4 0 0 FOXN2 3344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 48602109 48602109 + Missense_Mutation SNP G G A rs200645756 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FOXN2-226 NM_002158 exon7 c.G823A p.G275S AGTTACGGCAATG . 184 153 269 1 G|0.999;A|0.001 0 0 0 0 0 FSHR 2492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 49244660 49244660 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FSHR-527 NM_181446 exon4 c.G342T p.E114D GAAGGCCTCAGGG . 99 87 166 0 . 0 0 0 0 0 NRXN1 9378 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 50149257 50149257 + Missense_Mutation SNP T T A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NRXN1-92 NM_001135659 exon24 c.A4469T p.Y1490F ATGGCATAGAGGA . 163 143 208 2 . 0 0 0 0 0 EML6 400954 hgsc.bcm.edu;bcgsc.ca 37 2 55176077 55176077 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001039753 exon28 c.4063delA p.K1355fs ATCACCAAAAAAA . 75 58 118 1 . 0 0 0 0 0 USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61571010 61571010 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . USP34-579 NM_014709 exon16 c.T2440C p.S814P GGTGAGATGTCAG . 232 201 278 0 . 0 0 0 0 0 TET3 200424 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74273495 74273495 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_144993 exon1 c.G46A p.A16T CTAAGCGCCTCAG . 90 17 98 0 . 0 0 0 0 0 WDR54 84058 broad.mit.edu 37 2 74649393 74649393 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WDR54-90 NM_032118 exon2 c.A113G p.H38R TGGTTCATGGACC . 225 7 104 0 . 9 9 0 0 0 GLI2 2736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 121744055 121744055 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GLI2-954 NM_005270 exon12 c.C2158T p.R720C CAGCTGCGCAAAC . 248 216 167 1 . 4 0 4 0 0 PROC 5624 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 128185950 128185950 + Missense_Mutation SNP C C T rs121918154 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PROC-90 NM_000312 exon9 c.C814T p.R272C CTGCGGCGCTGGG . 125 7 99 0 . 0 0 0 0 0 CCDC74B 91409 bcgsc.ca 37 2 130897620 130897620 + Missense_Mutation SNP A A G rs76485676 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC74B-90 NM_207310 exon6 c.T926C p.V309A TCCGGGACTGCCT . 50 41 70 2 A|0.879;G|0.121 167 0 167 0 0 POTEJ 653781 bcgsc.ca 37 2 131414645 131414645 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . CCGAGGCCCCCCT . 173 137 185 2 . 0 0 0 0 0 NR4A2 4929 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 157186454 157186454 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NR4A2-189 NM_006186 exon3 c.C245T p.P82L GACAGGGGCATTT . 234 15 309 0 . 0 0 0 0 0 ERMN 57471 broad.mit.edu;bcgsc.ca 37 2 158182171 158182171 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ERMN-92 NM_001009959 exon2 c.G23A p.R8Q TGAATCCGATCTG . 83 7 119 1 . 0 0 0 0 0 KCNH7 90134 broad.mit.edu;bcgsc.ca 37 2 163302907 163302907 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KCNH7-95 NM_033272 exon7 c.C1175T p.T392I CGTGGTGTCTGCA . 129 6 188 1 . 0 0 0 0 0 SCN3A 6328 broad.mit.edu;bcgsc.ca 37 2 165947568 165947568 + Missense_Mutation SNP T T A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCN3A-141 NM_006922 exon28 c.A5095T p.M1699L AGATCATGCTGTT . 278 8 418 0 . 0 0 0 0 0 SCN7A 6332 broad.mit.edu 37 2 167298121 167298121 + Silent SNP G G A rs181976611 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCN7A-67 NM_002976 exon14 c.C1942T p.L648L CAAACAGCTTCAT . 234 4 288 0 G|0.999;A|0.001 0 0 0 0 0 COL5A2 1290 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 189898939 189898939 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . COL5A2-92 NM_000393 exon54 c.C4357T p.R1453W CATTCCGCTTCTG . 77 12 91 0 . 0 0 0 0 0 SDPR 8436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 192700699 192700699 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SDPR-92 NM_004657 exon2 c.G1228A p.D410N CCCCATCGGAGCG . 53 46 31 0 . 2 2 0 0 0 SPATS2L 26010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201342532 201342532 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPATS2L-48 NM_001100423 exon13 c.C1455T p.G485G CAAAGGCGGTGCC . 47 21 80 0 . 7 5 2 0 0 EEF1B2 1933 broad.mit.edu 37 2 207025358 207025358 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EEF1B2-227 NM_021121 exon3 c.A127G p.S43G GTGTCCAGCCCAC . 138 6 166 1 . 81 80 1 0 0 EEF1B2 1933 broad.mit.edu 37 2 207025366 207025366 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EEF1B2-227 NM_021121 exon3 c.G135A p.P45P CCCACCGCCTGCC . 138 6 169 1 . 67 67 0 0 0 MDH1B 130752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207615686 207615686 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MDH1B-94 NM_001039845 exon6 c.C1024T p.R342C CAGGGCGTGAATA . 28 16 66 0 . 0 0 0 0 0 SMARCAL1 50485 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 217300105 217300105 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SMARCAL1-293 NM_014140 exon9 c.C1530T p.N510N CATCAACGTCGTG . 190 167 194 2 . 3 0 3 0 0 PLCD4 84812 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219498432 219498432 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLCD4-661 NM_032726 exon11 c.C1554T p.Y518Y CTTCTACGAGATA . 67 58 89 1 . 3 0 3 0 0 SLC4A3 6508 bcgsc.ca 37 2 220505265 220505265 + Silent SNP T T C rs684428 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC4A3-157 NM_201574 exon21 c.T3472C p.L1158L CAGCGTTTGTTGC . 153 6 171 1 T|0.289;C|0.711 242 242 0 0 0 SCG2 7857 ucsc.edu 37 2 224462285 224462285 + Silent SNP C C G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCG2-69 NM_003469 exon2 c.G1716C p.G572G CGGGGGCCCCACA . 15 1 30 0 . 20 16 4 0 0 AGFG1 3267 hgsc.bcm.edu;bcgsc.ca 37 2 228384741 228384744 + Frame_Shift_Del DEL GAAA GAAA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 GAAA GAAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AGFG1-228 NM_004504 exon3 c.339_342del p.113_114del AAAAGTGAAAGAG . 102 91 180 2 . 0 0 0 0 0 UGT1A3 54659 hgsc.bcm.edu;bcgsc.ca 37 2 234638283 234638283 + Frame_Shift_Del DEL T T - rs45586035 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UGT1A3-24 NM_019093 exon1 c.511delT p.F171fs ACTGTGTTTTTTT . 256 207 330 0 T|0.007;-|0.993 0 0 0 0 0 KLHL30 377007 broad.mit.edu 37 2 239059485 239059485 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KLHL30-22 NM_198582 exon8 c.G1516A p.G506S GAGAATGGCGCGC . 211 5 25 0 . 0 0 0 0 0 ANO7 50636 bcgsc.ca 37 2 242157228 242157228 + Silent SNP G G C rs78605785 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANO7-92 NM_001001891 exon20 c.G2262C p.P754P GCGCCCGGTGGCC . 115 115 7 0 C|0.028;G|0.842;T|0.130 0 0 0 0 0 CXXC11 285093 hgsc.bcm.edu 37 2 242814035 242814035 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_173821 exon2 c.G328A p.E110K CCGGGCGAGCAGC . 13 10 0 0 . 0 0 0 0 0 PDYN 5173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 1961122 1961122 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDYN-92 NM_001190898 exon4 c.C612A p.Y204X GCGTTTGTACAGG . 88 83 154 0 . 0 0 0 0 0 FASTKD5 60493 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3127458 3127458 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FASTKD5-90 NM_021826 exon2 c.G2259A p.A753A AAGAAACGCCAAC . 133 119 168 2 . 25 0 25 0 0 C20orf27 54976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3734755 3734755 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C20orf27-90 NM_001039140 exon6 c.G550A p.A184T GCTCGGCGCCCAC . 211 55 44 0 . 23 19 4 0 0 ESF1 51575 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 13695562 13695563 + Frame_Shift_Del DEL TT TT - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 TT TT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ESF1-91 NM_001276380 exon14 c.2514_2515del p.838_839del GCTCTGTTTTGGT . 46 40 75 0 . 0 0 0 0 0 DZANK1 55184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18424085 18424085 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001099407 exon8 c.G653A p.R218Q GATGGCCGGGGGG . 215 199 233 0 . 0 0 0 0 0 CST2 1470 bcgsc.ca 37 20 23805918 23805918 + Nonsense_Mutation SNP G G A rs6049157 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CST2-90 NM_001322 exon2 c.C271T p.R91X TGGTTCGGCCCAC . 332 9 372 1 G|0.988;A|0.012 0 0 0 0 0 FAM182A 284800 broad.mit.edu 37 20 26061817 26061817 + RNA SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . TTCTCCTGCTTAG . 60 4 66 1 . 0 0 0 0 0 PLAGL2 5326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 30785207 30785207 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLAGL2-651 NM_002657 exon3 c.G539A p.R180H ACCCGGCGTGAGT . 95 14 71 0 . 0 0 0 0 0 ASXL1 171023 broad.mit.edu 37 20 31022442 31022442 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ASXL1-2057 NM_015338 exon12 c.1927delG p.G643fs ATCGGAGGGGGGG . 29 22 4 0 . 0 0 0 0 0 LOC149950 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 31189498 31189498 + RNA SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . TGCAAACGTAAGG . 107 41 157 0 . 0 0 0 0 0 EPB41L1 2036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34778675 34778675 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EPB41L1-93 NM_001258329 exon12 c.G1256A p.R419H TTGAGCGTTCTTC . 56 47 59 0 . 24 1 23 0 0 PLCG1 5335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 39793679 39793679 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLCG1-911 NM_182811 exon13 c.G1324A p.V442M AAGCCCGTGGAGA . 124 57 169 0 . 14 5 9 0 0 CHD6 84181 broad.mit.edu 37 20 40074318 40074318 + Silent SNP G G A rs139410145 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CHD6-238 NM_032221 exon25 c.C3864T p.G1288G GAACACGCCAATG . 126 5 139 0 G|1.000;A|0.000 2 2 0 0 0 MYBL2 4605 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 42328526 42328526 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYBL2-415 NM_002466 exon7 c.C793T p.R265X GCAGTGCGAACAC . 141 135 191 2 . 0 0 0 0 0 CTSA 5476 broad.mit.edu 37 20 44526395 44526395 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CTSA-91 NM_000308 exon13 c.G1258A p.A420T GACATGGCCTGCA . 122 5 154 0 . 431 417 14 0 0 DIDO1 11083 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 61522425 61522425 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DIDO1-96 NM_080797 exon15 c.G3428A p.R1143H CGGCCACGGCTGC . 167 9 186 0 . 2 2 0 0 0 SCAF4 57466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 33065781 33065781 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCAF4-90 NM_020706 exon12 c.C1339T p.R447X TAGATCGCCTCCT . 72 17 88 0 . 5 5 0 0 0 ITSN1 6453 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 35208767 35208767 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ITSN1-94 NM_001001132 exon29 c.C3492T p.Y1164Y GATGTACGACTAC . 170 76 216 1 . 5 3 2 0 0 SIM2 6493 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 38098480 38098480 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SIM2-90 NM_005069 exon6 c.G604A p.D202N CTGTACGACTCCT . 117 9 112 0 . 0 0 0 0 0 DSCR6 53820 ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38390297 38390297 + Silent SNP C C T rs138756839 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DSCR6-153 NM_018962 exon4 c.C363T p.S121S TGCTTCCGAAGCT . 43 36 55 0 C|0.999;T|0.001 0 0 0 0 0 BRWD1 54014 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 40667746 40667746 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BRWD1-94 NM_018963 exon7 c.532delA p.M178fs TGTGCATTTTTAT . 93 83 104 0 . 0 0 0 0 0 B3GALT5 10317 ucsc.edu;bcgsc.ca 37 21 41033159 41033159 + Missense_Mutation SNP G G A rs144752439 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . B3GALT5-91 NM_033170 exon3 c.G673A p.V225M GGCGACGTGGCGA . 67 59 74 2 G|1.000;A|0.000 0 0 0 0 0 PFKL 5211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45736189 45736189 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PFKL-251 NM_002626 exon8 c.C810T p.N270N CCGCAACGGGAAG . 189 65 97 0 . 12 9 3 0 0 PFKL 5211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45744758 45744758 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PFKL-251 NM_002626 exon18 c.C1835T p.T612M ACATGACGGAGAA . 143 83 76 0 . 46 30 16 0 0 KRTAP10-7 386675 broad.mit.edu 37 21 46020656 46020670 + Splice_Site DEL CTGCTGCGCCCCCAG CTGCTGCGCCCCCAG - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . GCCCCCCTGCTGC . 54 14 11 0 . 0 0 0 0 0 LOC642852 0 broad.mit.edu 37 21 46713303 46713303 + RNA DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . . . . . GCGGAAGGGGGCT . 117 9 117 0 . 0 0 0 0 0 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 46900432 46900432 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . COL18A1-90 NM_030582 exon11 c.C1990T p.R664W GCCCTGCGGGTGA . 50 5 70 0 . 0 0 0 0 0 PRMT2 3275 broad.mit.edu;bcgsc.ca 37 21 48068519 48068519 + Silent SNP G G A rs150978784 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRMT2-91 NM_001242864 exon5 c.G477A p.A159A CTATGCGCGGCCT . 90 5 112 0 G|0.999;A|0.001 18 16 2 0 0 CECR5 27440 hgsc.bcm.edu 37 22 17640022 17640022 + Silent SNP G G C rs11550530 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CECR5-514 NM_033070 exon1 c.C120G p.P40P CTGAGCGGGGCCC . 5 5 0 0 . 0 0 0 0 0 PRODH 5625 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 18900804 18900804 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRODH-289 NM_016335 exon15 c.C1687T p.R563C CACGGCGGGACAA . 187 10 81 0 . 1 1 0 0 0 MN1 4330 hgsc.bcm.edu 37 22 28194988 28194988 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MN1-993 NM_002430 exon1 c.C1544T p.P515L GGGGCCGGATGCT . 103 6 4 0 . 0 0 0 0 0 TTC28 23331 hgsc.bcm.edu;broad.mit.edu 37 22 28389367 28389367 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001145418 exon18 c.5384delC p.P1795fs CTGGTTGGGGGGT . 45 22 7 0 . 0 0 0 0 0 ZNRF3 84133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29444383 29444383 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNRF3-69 NM_001206998 exon7 c.C919T p.R307W GAGCTGCGGGTCA . 161 145 169 1 . 0 0 0 0 0 SLC35E4 339665 hgsc.bcm.edu 37 22 31032952 31032952 + Missense_Mutation SNP T T G rs150781327 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC35E4-90 NM_001001479 exon1 c.T515G p.L172R TCTGCCTGGGGGC . 20 17 0 0 T|0.995;G|0.005 4 0 4 0 0 TMPRSS6 164656 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 37466579 37466579 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMPRSS6-292 NM_153609 exon15 c.1813delG p.A605fs TGAGGGCCCCCCC . 135 112 92 0 . 0 0 0 0 0 BAIAP2L2 80115 broad.mit.edu;bcgsc.ca 37 22 38482353 38482394 + In_Frame_Del DEL TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BAIAP2L2-91 NM_025045 exon12 c.1322_1363del p.441_455del TTGGGGTGCGGGA . 34 0 12 0 . 0 0 0 0 0 CACNA1I 8911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 39966861 39966861 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA1I-135 NM_001003406 exon1 c.C104T p.P35L CCTCCCCGCCAGG . 74 7 33 0 . 1 1 0 0 0 TNRC6B 23112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 40661638 40661638 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TNRC6B-22 NM_001162501 exon5 c.1404delA p.S468fs TGGGTCAAAAAAT . 55 45 67 0 . 0 0 0 0 0 FBLN1 2192 bcgsc.ca 37 22 45959041 45959041 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FBLN1-515 NM_001996 exon15 c.C1947T p.P649P TGTCCCCGAGCCC . 162 6 186 0 . 14 13 1 0 0 MLC1 23209 hgsc.bcm.edu 37 22 50502469 50502469 + Silent SNP A A G rs11568190 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MLC1-91 NM_015166 exon11 c.T1053C p.A351A CTCCCCAGCCAGG . 18 12 0 0 A|0.901;G|0.099 0 0 0 0 0 THUMPD3 25917 bcgsc.ca 37 3 9422210 9422210 + Silent SNP T T C rs2596916 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . THUMPD3-227 NM_001114092 exon7 c.T1032C p.C344C TGACTGTTTCCAT . 73 5 94 0 T|0.410;C|0.590 3 3 0 0 0 GRIP2 80852 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 14552686 14552686 + RNA SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRIP2-69 . . . . GTCCTCGTCCTTC . 89 76 109 0 . 0 0 0 0 0 NR2C2 7182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 15071882 15071882 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NR2C2-226 NM_003298 exon10 c.G1090A p.V364I ATCCACGTCATCA . 183 164 207 0 . 5 2 3 0 0 CTDSPL 10217 bcgsc.ca 37 3 38017252 38017252 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CTDSPL-90 NM_001008392 exon7 c.G572A p.R191Q GGGCCCGGCTCTT . 49 27 75 3 . 2 0 2 0 0 TTC21A 199223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39180220 39180220 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TTC21A-91 NM_145755 exon29 c.G3904A p.D1302N CACCCCGACTACC . 106 93 146 1 . 7 0 7 0 0 NKTR 4820 bcgsc.ca 37 3 42660604 42660604 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NKTR-93 NM_005385 exon4 c.G226T p.G76W CAGGGTGGGGACT . 67 4 106 0 . 0 0 0 0 0 CCDC13 152206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42771959 42771959 + Missense_Mutation SNP C C T rs141485184 by1000genomes;alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC13-91 NM_144719 exon13 c.G1718A p.R573Q TGTTACCGTTTCT . 131 115 181 0 C|0.999;G|0.000 0 0 0 0 0 NBEAL2 23218 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 47036641 47036641 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NBEAL2-69 NM_015175 exon13 c.G1416A p.A472A CCTAGCGCAACGC . 109 99 8 0 . 2 1 1 0 0 KIF9 64147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 47312930 47312930 + Missense_Mutation SNP G G A rs201201745 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIF9-91 NM_182902 exon5 c.C388T p.R130C TGGGGCGTTCTTC . 80 8 126 0 G|1.000;A|0.000 0 0 0 0 0 SCAP 22937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 47465429 47465429 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCAP-91 NM_012235 exon9 c.G1144A p.A382T CTTGGGCGATCCG . 88 75 116 0 . 0 0 0 0 0 GPX1 2876 broad.mit.edu 37 3 49395482 49395482 + Missense_Mutation SNP G G C rs75404373 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPX1-68 . . . . TTGCACGGGAAGC . 98 17 17 0 G|0.333;C|0.667 245 245 0 0 0 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49694175 49694175 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BSN-97 NM_003458 exon5 c.C7186T p.R2396W CTAGAGCGGGAAC . 337 123 250 0 . 0 0 0 0 0 SEMA3G 56920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52475300 52475300 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SEMA3G-70 NM_020163 exon7 c.C793T p.R265C CCACGCGGCTGAC . 160 152 123 1 . 0 0 0 0 0 GNL3 26354 bcgsc.ca 37 3 52727736 52727736 + Silent SNP A A G rs4532127 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GNL3-90 NM_014366 exon13 c.A1413G p.E471E ACATGAAGAATTG . 253 8 313 3 A|0.878;G|0.122 45 45 0 0 0 MAGI1 9223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 65365023 65365023 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAGI1-661 NM_015520 exon18 c.G2992A p.D998N CCACGTCGTAGGG . 74 73 32 0 . 3 1 2 0 0 NXPE3 91775 broad.mit.edu;bcgsc.ca 37 3 101520735 101520735 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_145037 exon5 c.C750A p.F250L CTGCTTCAAACCA . 73 30 67 2 . 1 0 1 0 0 PLCXD2 257068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 111432936 111432936 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLCXD2-227 NM_001185106 exon3 c.G827A p.R276Q TTGCCCGGGGCTT . 33 33 18 0 . 0 0 0 0 0 TAGLN3 29114 broad.mit.edu 37 3 111718285 111718285 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TAGLN3-90 NM_001008272 exon2 c.C16T p.P6S AGGGGCCCGAGCT . 59 17 78 2 . 0 0 0 0 0 FBXO40 51725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121341510 121341510 + Missense_Mutation SNP G G A rs143415272 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FBXO40-273 NM_016298 exon3 c.G1234A p.V412I GGCCACGTCATCT . 103 83 129 0 G|1.000;A|0.000 0 0 0 0 0 PLXNA1 5361 broad.mit.edu 37 3 126707544 126707544 + Silent SNP T T G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLXNA1-93 NM_032242 exon1 c.T108G p.G36G CGGGGGTTCACAG . 121 19 16 1 . 1 1 0 0 0 TMCC1 23023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 129370538 129370538 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMCC1-91 NM_001017395 exon6 c.G1748A p.R583Q AGGTTCCGGGCAG . 149 134 161 0 . 2 0 2 0 0 NPHP3 27031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 132407633 132407633 + Missense_Mutation SNP C C T rs150867534 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NPHP3-91 NM_153240 exon21 c.G2986A p.V996M ACTGCACGTATAC . 87 10 79 0 C|0.999;T|0.000 4 4 0 0 0 KY 339855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 134322975 134322975 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KY-24 NM_178554 exon11 c.G1432A p.G478R AGCGCCCGTCGCT . 65 7 72 0 . 0 0 0 0 0 IL20RB 53833 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 136701009 136701009 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IL20RB-91 NM_144717 exon3 c.G223A p.E75K GAGTACGAGAGCC . 140 47 188 0 . 0 0 0 0 0 SLC9A9 285195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142987727 142987727 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC9A9-229 NM_173653 exon15 c.A1700G p.Q567R TAGGCTTGAGGAC . 172 73 233 0 . 0 0 0 0 0 IGSF10 285313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151164728 151164728 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . IGSF10-102 NM_178822 exon4 c.G3041T p.R1014M ATTTTCCTCTGCC . 72 62 112 0 . 0 0 0 0 0 SLITRK3 22865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 164907802 164907802 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLITRK3-100 NM_014926 exon2 c.C817T p.R273X TTTCTCGTAGGTC . 55 50 91 0 . 0 0 0 0 0 MYNN 55892 broad.mit.edu;bcgsc.ca 37 3 169500336 169500336 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYNN-91 NM_001185118 exon6 c.G1304A p.R435H ATGTCCGTAGGCA . 180 7 126 0 . 3 3 0 0 0 DCUN1D1 54165 bcgsc.ca 37 3 182681740 182681740 + Silent SNP C C T rs4859146 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DCUN1D1-91 NM_020640 exon3 c.G318A p.A106A CTTCCACGCAATA . 112 6 174 1 C|0.308;T|0.692 5 5 0 0 0 CHRD 8646 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 184100913 184100913 + Missense_Mutation SNP G G A rs201032668 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CHRD-93 NM_003741 exon10 c.G1175A p.R392H GGCTGCGCATCAG . 74 31 39 1 G|0.999;A|0.000 1 1 0 0 0 ETV5 2119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 185766567 185766567 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ETV5-706 NM_004454 exon13 c.C1394T p.P465L AGGAACGGACGCT . 194 171 232 0 . 4 1 3 0 0 FAM157A 728262 bcgsc.ca 37 3 197880129 197880129 + Missense_Mutation SNP T T C rs28554473 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001145248 exon2 c.T208C p.W70R AAGAACTGGCAGC . 752 300 413 12 . 0 0 0 0 0 FAM157A 728262 bcgsc.ca 37 3 197880139 197880139 + Missense_Mutation SNP A A G rs1820791 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001145248 exon2 c.A218G p.Q73R AGCAGCAGCAGCA . 934 334 488 14 . 0 0 0 0 0 UVSSA 57654 broad.mit.edu 37 4 1373989 1373989 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_020894 exon11 c.C1723T p.R575W GACGGCCGGCTCT . 224 10 24 0 . 2 1 1 0 0 UVSSA 57654 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 4 1374002 1374002 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_020894 exon11 c.G1736A p.R579H GTGAGCGCCAAGA . 161 81 10 0 . 2 0 2 0 0 MFSD10 10227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 2933798 2933798 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MFSD10-68 NM_001120 exon6 c.G776A p.R259H TGGCCACGAGCGA . 133 20 20 0 . 47 37 10 0 0 ADRA2C 152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3768709 3768709 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADRA2C-522 NM_000683 exon1 c.G376A p.V126M TGCGGCGTGTACC . 178 45 25 0 . 3 3 0 0 0 CRMP1 1400 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 5844857 5844857 + Missense_Mutation SNP G G A rs142255876 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CRMP1-92 NM_001014809 exon7 c.C995T p.T332M GGACCCGTGATGC . 359 31 216 0 G|1.000;A|0.000 6 5 1 0 0 SORCS2 57537 broad.mit.edu 37 4 7716056 7716056 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SORCS2-91 NM_020777 exon16 c.G2079A p.A693A GTCGGCGCTCACG . 276 13 75 1 . 0 0 0 0 0 SORCS2 57537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 7738821 7738821 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SORCS2-91 NM_020777 exon26 c.G3337A p.A1113T GTGTACGCCCAAA . 273 110 125 0 . 3 3 0 0 0 WDR1 9948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 10086077 10086077 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WDR1-48 NM_017491 exon9 c.C1029T p.D343D GTGTCCGTCGTGG . 324 54 220 0 . 0 0 0 0 0 FAM184B 27146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 17636715 17636715 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM184B-23 NM_015688 exon16 c.G2806A p.A936T ATGCTGCGTAGTG . 95 29 71 0 . 1 1 0 0 0 SLIT2 9353 broad.mit.edu;bcgsc.ca 37 4 20469421 20469421 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLIT2-521 NM_004787 exon5 c.C442T p.R148C GCTTTCCGTGGGG . 169 8 168 0 . 0 0 0 0 0 PPARGC1A 10891 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 23803958 23803958 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PPARGC1A-230 NM_013261 exon11 c.G2030A p.R677H ATCACACGGCGCT . 177 77 109 1 . 0 0 0 0 0 CCDC149 91050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 24821571 24821571 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC149-68 NM_173463 exon12 c.G1069A p.D357N TGGGGTCGCTGAA . 253 113 150 0 . 17 4 13 0 0 FRYL 285527 hgsc.bcm.edu;bcgsc.ca 37 4 48555392 48555394 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FRYL-69 NM_015030 exon36 c.4273_4275del p.1425_1425del AATGACCTTCTTC . 100 30 85 0 . 0 0 0 0 0 KDR 3791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55973911 55973911 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KDR-2298 NM_002253 exon10 c.G1405A p.E469K TGGGCTCGTTGGC . 282 147 190 0 . 0 0 0 0 0 CLOCK 9575 hgsc.bcm.edu 37 4 56336954 56336954 + Nonsense_Mutation DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CLOCK-515 NM_004898 exon8 c.368delT p.L123X ATTGCTAAAAAAA . 160 85 155 1 . 0 0 0 0 0 HNRPDL 9987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 83347682 83347682 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HNRPDL-91 NM_031372 exon6 c.G1126A p.G376R CATATCCGCCATA . 156 70 116 0 . 119 79 39 1 0 SEC31A 22872 hgsc.bcm.edu 37 4 83785565 83785565 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SEC31A-268 NM_001077206 exon11 c.1384delA p.I462fs CATCAATTTTTTT . 108 56 47 1 . 0 0 0 0 0 PKD2 5311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 88996108 88996108 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PKD2-91 NM_000297 exon14 c.C2667T p.A889A GGTGGCCGAGGTC . 295 78 231 0 . 0 0 0 0 0 FAM13A 10144 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 89670963 89670963 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM13A-70 NM_014883 exon16 c.C2038T p.R680W ACTTCCGGATCTT . 133 37 68 2 . 3 3 0 0 0 PCDH18 54510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 138442414 138442414 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDH18-185 NM_019035 exon4 c.T3177C p.S1059S ATGCGTACTGGCT . 267 104 170 0 . 11 5 6 0 0 MAP9 79884 broad.mit.edu 37 4 156273869 156273869 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAP9-91 NM_001039580 exon13 c.1700delA p.K567fs GCTTCCTTTTTTT . 15 6 8 0 . 0 0 0 0 0 GUCY1B3 2983 broad.mit.edu;bcgsc.ca 37 4 156680986 156680986 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_000857 exon2 c.C51T p.Y17Y CAATTACGGCCCC . 241 121 127 1 . 0 0 0 0 0 FRG1 2483 bcgsc.ca 37 4 190878626 190878626 + Missense_Mutation SNP G G A rs71229055 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FRG1-90 NM_004477 exon6 c.G506A p.S169N CAAAAAGTAAAAC . 929 58 921 16 G|0.500;A|0.500 123 123 0 0 0 CLPTM1L 81037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1339097 1339097 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CLPTM1L-153 NM_030782 exon4 c.G477A p.P159P ACTCGTCGGCTTC . 322 160 133 0 . 1 1 0 0 0 ADAMTS16 170690 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 5146290 5146290 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ADAMTS16-275 NM_139056 exon3 c.G223A p.V75M GATTACGTGTCCC . 221 80 150 1 . 0 0 0 0 0 TRIO 7204 hgsc.bcm.edu 37 5 14488142 14488142 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TRIO-562 NM_007118 exon48 c.G7405A p.G2469S TCTCTCGGCAAGG . 22 7 2 0 . 8 3 5 0 0 MYO10 4651 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 16701081 16701081 + Silent SNP C C T rs150139256 by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MYO10-3 NM_012334 exon25 c.G3423A p.A1141A GGACTGCGCCCCC . 278 124 129 2 C|0.999;T|0.000 1 0 1 0 0 DROSHA 29102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 31526976 31526976 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DROSHA-227 NM_013235 exon4 c.C64T p.R22X CTCCTCGTCCTCG . 60 12 65 0 . 3 3 0 0 0 C1QTNF3 114899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 34043081 34043081 + Silent SNP G G A rs143587337 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C1QTNF3-90 NM_181435 exon1 c.C150T p.S50S GGAGCCGCTACGG . 167 85 98 0 G|1.000;A|0.000 0 0 0 0 0 SLC38A9 153129 broad.mit.edu 37 5 54941671 54941671 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC38A9-68 NM_173514 exon12 c.1113delT p.F371fs ATGAATAAAAAAA . 35 9 34 0 . 0 0 0 0 0 MAP3K1 4214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 56189493 56189493 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAP3K1-956 NM_005921 exon20 c.C4525T p.R1509C GTCTTTCGTACTA . 233 111 186 0 . 2 1 1 0 0 ELOVL7 79993 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 60062450 60062450 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ELOVL7-90 NM_001104558 exon5 c.G344A p.R115H CAGGTACGTGCCA . 240 103 221 1 . 0 0 0 0 0 ELOVL7 79993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 60067887 60067887 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ELOVL7-90 NM_001104558 exon3 c.C98T p.S33L AGAGGCGAGGACA . 262 56 162 0 . 2 2 0 0 0 ZSWIM6 57688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 60839386 60839386 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_020928 exon14 c.G2890A p.V964I ACCATCGTCCGCC . 230 55 141 0 . 2 1 1 0 0 NLN 57486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 65118697 65118697 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NLN-90 NM_020726 exon13 c.C2069A p.P690Q GTGAGCCAAACCA . 168 41 108 0 . 1 1 0 0 0 GFM2 84340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 74028894 74028894 + Missense_Mutation SNP G G A rs139234343 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GFM2-90 NM_032380 exon16 c.C1540T p.R514C CTTCACGCTGAAG . 97 18 77 0 G|1.000;A|0.000 12 11 1 0 0 THBS4 7060 hgsc.bcm.edu 37 5 79331430 79331430 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . THBS4-90 NM_003248 exon1 c.G70A p.A24T GCAGGCGCCCAGG . 12 9 0 0 . 0 0 0 0 0 SERINC5 256987 broad.mit.edu 37 5 79473787 79473787 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SERINC5-1 NM_001174071 exon3 c.G295A p.A99T AACAAGCCATTCC . 151 5 143 0 . 11 11 0 0 0 NR2F1 7025 bcgsc.ca 37 5 92924033 92924033 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NR2F1-227 NM_005654 exon2 c.G874A p.V292I GACCGCGTCGTGG . 207 101 53 2 . 2 0 2 0 0 FNIP1 96459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 131014837 131014837 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FNIP1-92 NM_133372 exon12 c.C1234T p.R412X CAATTCGTGGCAT . 413 220 327 0 . 0 0 0 0 0 SOWAHA 134548 hgsc.bcm.edu 37 5 132149684 132149684 + Missense_Mutation SNP G G C rs40274 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_175873 exon1 c.G371C p.R124P TGGTCCGGGTGCC . 4 4 0 0 G|0.980;C|0.020 0 0 0 0 0 PHF15 23338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 133896521 133896521 + Silent SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHF15-90 NM_015288 exon6 c.T558C p.I186I GGCCATTGAGACG . 437 60 283 0 . 4 4 0 0 0 PHF15 23338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 133896569 133896569 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHF15-90 NM_015288 exon6 c.C606T p.C202C TGTCTGCGACGTG . 491 248 314 0 . 12 2 10 0 0 TRPC7 57113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 135692634 135692634 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001167576 exon2 c.G442A p.D148N CGTCGTCGCGCAG . 162 79 11 0 . 0 0 0 0 0 SIL1 64374 broad.mit.edu 37 5 138282960 138282960 + Missense_Mutation SNP C C T rs192255604 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SIL1-90 NM_001037633 exon11 c.G1232A p.R411H CGGTAGCGGTCCC . 319 9 14 0 C|0.999;T|0.000 219 213 6 0 0 TMEM173 340061 ucsc.edu;bcgsc.ca 37 5 138861257 138861257 + Silent SNP C C T rs149842998 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMEM173-69 NM_198282 exon3 c.G33A p.P11P GGGACACGGGATG . 450 242 278 3 C|0.999;T|0.001 0 0 0 0 0 WDR55 54853 hgsc.bcm.edu;bcgsc.ca 37 5 140049102 140049102 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WDR55-91 NM_017706 exon7 c.1015delA p.K339fs CGGCGCAAAAAAA . 436 209 250 2 . 0 0 0 0 0 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140181912 140181912 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHA3-98 NM_031497 exon1 c.G1130A p.R377H CCGACCGCGACTC . 451 97 221 0 . 1 1 0 0 0 PCDHA7 56141 broad.mit.edu;bcgsc.ca 37 5 140214422 140214422 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHA7-94 NM_031852 exon1 c.T454C p.F152L TCTCGGTTTCCAC . 782 26 517 0 . 0 0 0 0 0 PCDHA13 56136 hgsc.bcm.edu 37 5 140263870 140263870 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHA13-75 NM_031865 exon1 c.G2017A p.G673S GAGAGCGGCCAAG . 129 31 4 0 . 0 0 0 0 0 PCDHB5 26167 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140515676 140515676 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHB5-95 NM_015669 exon1 c.G660A p.P220P GGCTCCGCCCAGG . 201 56 112 2 . 1 1 0 0 0 PCDHB12 56124 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140589396 140589396 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHB12-93 NM_018932 exon1 c.C917A p.P306H CAGCACCTTTGGA . 92 19 88 1 . 1 0 1 0 0 PCDHB13 56123 hgsc.bcm.edu 37 5 140595625 140595625 + Missense_Mutation SNP G G A rs76927815 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHB13-93 NM_018933 exon1 c.G1930A p.V644I GTGCTGGTCAAGG . 24 14 0 0 G|0.500;A|0.500 46 41 5 0 0 PCDHGC4 56098 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140865109 140865109 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PCDHGC4-72 NM_018928 exon1 c.C369T p.I123I AGAGATCGTAGAT . 167 10 127 0 . 0 0 0 0 0 ARAP3 64411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 141051181 141051181 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARAP3-291 NM_022481 exon12 c.C1810T p.R604W GCTTCCGGAAGAG . 195 86 129 0 . 1 1 0 0 0 SCGB3A2 117156 bcgsc.ca 37 5 147261610 147261610 + Silent SNP G G A rs34212847 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SCGB3A2-153 NM_054023 exon3 c.G279A p.V93V CTTGGTGTGACAT . 212 8 122 1 G|0.980;A|0.020 0 0 0 0 0 CSF1R 1436 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 149435889 149435889 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CSF1R-2640 NM_005211 exon18 c.G2335A p.V779M CTGCCACGTCCCG . 416 114 227 2 . 0 0 0 0 0 C1QTNF2 114898 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 159781908 159781908 + Missense_Mutation SNP G G C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C1QTNF2-91 NM_031908 exon2 c.C246G p.S82R AGGCAGGCTGCAG . 33 27 14 0 . 0 0 0 0 0 NUDCD2 134492 hgsc.bcm.edu 37 5 162886888 162886888 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NUDCD2-90 NM_145266 exon1 c.G169A p.G57S GGCCGCCCACCGA . 99 10 17 0 . 4 4 0 0 0 TENM2 57451 broad.mit.edu;bcgsc.ca 37 5 167643865 167643865 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001122679 exon22 c.G4144A p.G1382S CTGCTGGGCTCCA . 258 11 169 0 . 0 0 0 0 0 FGFR4 2264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176520335 176520335 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FGFR4-1460 NM_022963 exon8 c.A1060G p.T354A ACAGGTACTGGGC . 151 56 68 0 . 0 0 0 0 0 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 176638620 176638620 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NSD1-188 NM_022455 exon5 c.C3220T p.R1074C CGAGAACGTGGAG . 456 35 314 0 . 0 0 0 0 0 COL23A1 91522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 177669111 177669111 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . COL23A1-91 NM_173465 exon27 c.G1513A p.G505S TCCGGCCGGGGAC . 156 32 36 0 . 1 1 0 0 0 RNF130 55819 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179394008 179394008 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RNF130-227 NM_018434 exon7 c.G948A p.P316P CAAATTCGGCTGC . 126 59 90 0 . 0 0 0 0 0 PXDC1 221749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 3738356 3738356 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_183373 exon2 c.G283A p.D95N CTATGTCGTGGGC . 88 82 90 0 . 1 0 1 0 0 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12120284 12120284 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HIVEP1-139 NM_002114 exon4 c.G256A p.V86I TTCGCCGTTCTTC . 47 28 40 0 . 0 0 0 0 0 ATXN1 6310 broad.mit.edu 37 6 16327865 16327867 + In_Frame_Del DEL TGC TGC - rs66949327 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATXN1-93 NM_001128164 exon7 c.675_677del p.225_226del CTGAGGTGCTGCT . 44 8 4 0 . 0 0 0 0 0 ATXN1 6310 hgsc.bcm.edu 37 6 16327906 16327906 + Missense_Mutation SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATXN1-93 NM_001128164 exon7 c.G636T p.Q212H CTGCTGCTGATGC . 37 12 3 0 . 1 1 0 0 0 VARS2 57176 bcgsc.ca 37 6 30890885 30890885 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VARS2-26 NM_001167734 exon24 c.C2280T p.G760G AGCGGGCGACTTG . 82 71 73 4 . 0 0 0 0 0 HLA-B 3106 hgsc.bcm.edu 37 6 31323953 31323960 + Frame_Shift_Del DEL CCAGCTTG CCAGCTTG - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 CCAGCTTG CCAGCTTG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HLA-B-90 NM_005514 exon3 c.603_610del p.201_204del CGCGCTCCAGCTT . 49 0 47 0 . 0 0 0 0 0 VARS 7407 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 31759412 31759412 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VARS-93 NM_006295 exon8 c.G1075A p.A359T GGATGGCGTTGGT . 144 123 179 0 . 2 0 2 0 0 CYP21A2 1589 bcgsc.ca 37 6 32007865 32007865 + Silent SNP T T C rs55695018 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CYP21A2-68 . . . . GGGCTCTGGACAG . 278 244 275 5 . 1106 7 1098 1 0 SYNGAP1 8831 broad.mit.edu;bcgsc.ca 37 6 33415649 33415649 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYNGAP1-48 NM_006772 exon18 c.G3824A p.R1275Q TGCGCCGGGACCA . 161 71 70 2 . 3 1 2 0 0 C6orf106 64771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 34558353 34558353 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C6orf106-93 NM_024294 exon5 c.G886A p.G296S ACTGGCCGAAGGG . 76 43 65 0 . 2 2 0 0 0 SRPK1 6732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 35837637 35837637 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SRPK1-359 NM_003137 exon11 c.C1033T p.R345C TATCACGTTCCAT . 89 75 153 0 . 1 0 1 0 0 BRPF3 27154 broad.mit.edu 37 6 36175153 36175153 + Missense_Mutation SNP C C G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BRPF3-92 NM_015695 exon4 c.C1669G p.H557D CTCCGGCATGACT . 265 8 288 0 . 5 5 0 0 0 MDGA1 266727 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 37619964 37619964 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MDGA1-91 NM_153487 exon7 c.C1135T p.R379C ACATGCGTGCCGG . 115 55 140 1 . 0 0 0 0 0 DAAM2 23500 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 39835483 39835483 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DAAM2-228 NM_015345 exon6 c.G626A p.R209H GCCTACGCACAGA . 71 62 106 1 . 1 1 0 0 0 TREM1 54210 bcgsc.ca 37 6 41243926 41243926 + Missense_Mutation SNP G G C rs2234245 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TREM1-577 NM_018643 exon4 c.C642G p.F214L ACTCAGGAATCCA . 161 6 177 2 G|0.729;C|0.271 0 0 0 0 0 CRISP2 7180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49660590 49660590 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CRISP2-91 NM_001142408 exon10 c.C628A p.L210I TTAGGAGATCTTG . 168 156 203 0 . 0 0 0 0 0 PAQR8 85315 broad.mit.edu 37 6 52268989 52268991 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PAQR8-68 NM_133367 exon2 c.978_980del p.326_327del CCTCTCCTTCTTC . 115 8 130 0 . 0 0 0 0 0 EYS 346007 broad.mit.edu 37 6 66005970 66005970 + Silent SNP G G A rs9345601 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EYS-660 NM_001142800 exon12 c.C1809T p.V603V AACATTGACAACA . 107 4 114 0 G|0.404;A|0.596 0 0 0 0 0 LMBRD1 55788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 70423650 70423650 + Missense_Mutation SNP C C T rs143758103 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LMBRD1-91 NM_018368 exon9 c.G802A p.A268T TTAAGGCGCGTTT . 46 44 105 0 A|0.000;C|1.000;T|0.000 0 0 0 0 0 C6orf57 135154 bcgsc.ca 37 6 71289189 71289189 + Missense_Mutation SNP A A G rs1048886 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C6orf57-90 NM_145267 exon2 c.A137G p.Q46R TCAAACAGTCCCT . 63 5 98 0 A|0.787;G|0.213 11 11 0 0 0 DPPA5 340168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 74063857 74063857 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DPPA5-90 NM_001025290 exon1 c.G92A p.R31Q AGCAGCCGCGTCT . 75 32 79 0 . 0 0 0 0 0 BEND3 57673 broad.mit.edu;bcgsc.ca 37 6 107390069 107390069 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BEND3-71 NM_001080450 exon5 c.C2326T p.R776W GCAGCCGCGTGGG . 85 6 51 0 . 1 1 0 0 0 PLAGL1 5325 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 144269186 144269186 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLAGL1-91 NM_001080953 exon6 c.C88T p.R30W ACGGCCGCTCCCT . 274 253 278 2 . 0 0 0 0 0 AKAP12 9590 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 151672365 151672365 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AKAP12-293 NM_005100 exon4 c.2839delC p.P947fs GAAGAACCCCCCA . 33 27 56 0 . 0 0 0 0 0 TBP 6908 bcgsc.ca 37 6 170871058 170871058 + Silent SNP G G A rs113440919 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TBP-91 NM_003194 exon3 c.G234A p.Q78Q GCAGCAGCAGCAG . 89 39 30 2 G|0.500;A|0.500 155 155 0 0 0 ELFN1 392617 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 1784620 1784620 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001128636 exon2 c.G388A p.G130S CTGCGCGGCCTGG . 168 14 33 0 . 0 0 0 0 0 FOXK1 221937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4799094 4799094 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FOXK1-516 NM_001037165 exon7 c.G1564A p.V522I CCCACCGTCACCA . 109 37 17 0 . 4 3 1 0 0 TNRC18 84629 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 5352513 5352515 + In_Frame_Del DEL GAA GAA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 GAA GAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TNRC18-46 NM_001080495 exon27 c.8007_8009del p.2669_2670del GTGGAGGAAGAAG . 55 13 51 0 . 0 0 0 0 0 GRID2IP 392862 ucsc.edu;bcgsc.ca 37 7 6561142 6561142 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001145118 exon6 c.C1002T p.H334H CTTGTCGTGGGAG . 281 91 167 2 . 0 0 0 0 0 DNAH11 8701 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 21646323 21646323 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAH11-146 . . . . TTAATGCAGAAAA . 49 10 38 0 . 2 2 0 0 0 BLVRA 644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 43827548 43827548 + Missense_Mutation SNP G G A rs138715080 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BLVRA-91 NM_001253823 exon4 c.G58A p.G20S CGAGCCGGCTCCG . 264 76 221 0 G|1.000;A|0.000 26 18 8 0 0 POLM 27434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44114081 44114081 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . POLM-229 NM_013284 exon7 c.T884C p.V295A GCATCTACATCGG . 241 142 21 0 . 0 0 0 0 0 OGDH 4967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44747186 44747186 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OGDH-228 NM_002541 exon22 c.G2802A p.S934S GCTGTCGCCATTC . 108 66 99 0 . 0 0 0 0 0 H2AFV 94239 ucsc.edu 37 7 44874113 44874113 + Missense_Mutation SNP T T C rs1802437 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . H2AFV-90 NM_012412 exon5 c.A374G p.Q125R GTTTTCTGCTGTC . 62 11 61 1 T|0.997;C|0.003 160 159 1 0 0 PKD1L1 168507 bcgsc.ca 37 7 47840387 47840387 + Missense_Mutation SNP C C T rs13231277 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PKD1L1-145 NM_138295 exon54 c.G8053A p.A2685T GGAAGGCGTCTGT . 180 8 154 0 C|0.858;T|0.142 0 0 0 0 0 PION 54103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 76942815 76942815 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PION-514 NM_017439 exon28 c.G2261A p.R754Q GGAAGCCGCACAA . 50 21 51 0 . 0 0 0 0 0 CACNA2D1 781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 81637024 81637024 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNA2D1-96 NM_000722 exon16 c.G1411A p.G471S ATTGGCCGGTTAT . 95 34 121 0 . 0 0 0 0 0 GRM3 2913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 86415919 86415919 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRM3-528 NM_000840 exon3 c.G811A p.V271I GCGCGCGTCGTGG . 94 35 16 0 . 0 0 0 0 0 TECPR1 25851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 97854151 97854151 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TECPR1-91 NM_015395 exon19 c.G2652A p.T884T CTGGTCCGTGCCC . 150 47 99 0 . 5 5 0 0 0 TRRAP 8295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 98609726 98609726 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TRRAP-923 NM_001244580 exon72 c.C11328T p.D3776D CCGGGACGAGATC . 232 79 183 0 . 29 22 7 0 0 SRRT 51593 broad.mit.edu 37 7 100479332 100479332 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SRRT-92 NM_001128853 exon4 c.304delG p.G102fs TATGCTGGGGGGG . 79 7 51 0 . 0 0 0 0 0 SERPINE1 5054 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100778833 100778833 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SERPINE1-652 NM_000602 exon6 c.G958A p.D320N ATGACCGACATGT . 88 5 104 0 . 0 0 0 0 0 SPDYE6 729597 bcgsc.ca 37 7 101989090 101989090 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPDYE6-1 NM_001146210 exon6 c.C783T p.D261D CTCGTCGTCCTCC . 1622 118 1447 4 . 2 2 0 0 0 DNAJB9 4189 broad.mit.edu 37 7 108212318 108212318 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNAJB9-226 NM_012328 exon2 c.G148T p.A50S AAGTTGGCCATGA . 124 5 103 0 . 1 1 0 0 0 LMOD2 442721 ucsc.edu;bcgsc.ca 37 7 123302045 123302045 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LMOD2-68 NM_207163 exon2 c.C405T p.D135D CAGTGACGAAGAG . 160 107 129 2 . 0 0 0 0 0 LRGUK 136332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 133932369 133932369 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LRGUK-227 NM_144648 exon17 c.G2045A p.R682H GGATACGCCCTGA . 140 80 126 0 . 1 1 0 0 0 NUP205 23165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 135323345 135323345 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NUP205-207 NM_015135 exon38 c.T5306C p.L1769S TCATGTTACAGAG . 185 36 158 0 . 18 12 6 0 0 ATP6V0A4 50617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138417706 138417706 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATP6V0A4-91 NM_130841 exon16 c.C1824T p.H608H GGGGGCGTGCTGA . 183 65 107 0 . 0 0 0 0 0 JHDM1D 80853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139818942 139818942 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . JHDM1D-91 NM_030647 exon9 c.T1217C p.V406A TTGGCTACAAACC . 69 25 61 0 . 0 0 0 0 0 GSTK1 373156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142965205 142965205 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GSTK1-90 NM_001143679 exon6 c.G727A p.V243M ATCACCGTGGCCC . 108 74 119 0 . 199 79 120 0 0 ZNF425 155054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 148801944 148801944 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZNF425-136 NM_001001661 exon4 c.G1019A p.R340H TTCAGGCGGAAGC . 48 14 31 0 . 0 0 0 0 0 SMARCD3 6604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150938652 150938652 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SMARCD3-228 NM_001003801 exon8 c.C865T p.Q289X CATACTGCCACAG . 202 47 114 0 . 124 109 15 0 0 HTR5A 3361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154863297 154863297 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HTR5A-155 NM_024012 exon1 c.C688T p.R230C AAGTTCCGCGTGG . 261 64 110 0 . 0 0 0 0 0 RBM33 155435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 155534695 155534695 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RBM33-23 NM_053043 exon13 c.G2232A p.S744S ACCCTCGCGGGCC . 336 81 139 0 . 1 1 0 0 0 SHH 6469 hgsc.bcm.edu 37 7 155596413 155596413 + Silent SNP C C T rs9333633 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SHH-1134 NM_000193 exon3 c.G570A p.S190S CGCCACCGAGTTC . 29 5 0 0 C|0.996;T|0.004 6 5 1 0 0 NOM1 64434 hgsc.bcm.edu 37 7 156742868 156742868 + Missense_Mutation SNP C C A rs199647631 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NOM1-90 NM_138400 exon1 c.C437A p.P146Q CGCGGCCGTCCCG . 15 10 0 0 C|0.999;A|0.000 0 0 0 0 0 UBE3C 9690 broad.mit.edu;bcgsc.ca 37 7 157000478 157000478 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UBE3C-704 NM_014671 exon13 c.G1658A p.C553Y ATGCATGCCTGGG . 165 6 75 0 . 2 2 0 0 0 UBE3C 9690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 157013470 157013470 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UBE3C-704 NM_014671 exon15 c.G2002A p.V668M CTGGACGGTGAGT . 125 15 52 0 . 0 0 0 0 0 CSMD1 64478 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 3047597 3047597 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CSMD1-86 NM_033225 exon34 c.C5235T p.P1745P GGGCTCGGGGACA . 126 43 126 0 . 0 0 0 0 0 CSMD1 64478 broad.mit.edu;bcgsc.ca 37 8 3432588 3432588 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CSMD1-86 NM_033225 exon10 c.C1223T p.A408V GTTCTCGCTGGAA . 90 28 107 1 . 0 0 0 0 0 RP1L1 94137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 10466464 10466464 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RP1L1-139 NM_178857 exon4 c.C5144T p.T1715M GGGTCCGTGTGGG . 76 23 44 0 . 0 0 0 0 0 NUDT18 79873 bcgsc.ca 37 8 21965113 21965113 + Missense_Mutation SNP T T C rs3739435 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_024815 exon5 c.A670G p.M224V GCTCCATAGGGTC . 131 5 64 0 T|0.476;C|0.524 5 5 0 0 0 SORBS3 10174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22421834 22421834 + Silent SNP G G A rs201952170 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SORBS3-90 NM_005775 exon9 c.G714A p.T238T CTGGACGGAAGAG . 162 104 128 0 G|0.999;A|0.000 0 0 0 0 0 LOXL2 4017 broad.mit.edu;bcgsc.ca 37 8 23174525 23174525 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LOXL2-272 NM_002318 exon9 c.G1573A p.G525R CCTCCCCGTCGTG . 221 11 43 0 . 0 0 0 0 0 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 35579761 35579761 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UNC5D-96 NM_080872 exon9 c.C1151T p.S384L TGTACTCGGGCTT . 222 148 167 0 . 0 0 0 0 0 UNC5D 137970 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 35588557 35588557 + Missense_Mutation SNP C C G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UNC5D-96 NM_080872 exon11 c.C1709G p.A570G ACGGTGCCATCCC . 111 73 143 1 . 2 0 2 0 0 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 41561586 41561586 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ANK1-716 NM_001142446 exon20 c.C2367T p.N789N AGCACCGTTTTTC . 99 59 114 0 . 0 0 0 0 0 OPRK1 4986 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 54147371 54147371 + Silent SNP C C T rs200269505 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OPRK1-70 NM_000912 exon3 c.G558A p.S186S AGATGACGACAGC . 216 69 185 1 . 0 0 0 0 0 OPRK1 4986 hgsc.bcm.edu 37 8 54163562 54163562 + Silent SNP C C A rs1051660 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OPRK1-70 NM_000912 exon2 c.G36T p.P12P AGGGCCCGGCTCC . 6 4 0 0 C|0.895;A|0.105 0 0 0 0 0 BHLHE22 27319 hgsc.bcm.edu 37 8 65493532 65493532 + Missense_Mutation SNP T T A rs62519835 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BHLHE22-90 NM_152414 exon1 c.T185A p.L62Q CGCCCCTGGGCTG . 7 5 0 0 T|0.935;A|0.065 0 0 0 0 0 VCPIP1 80124 hgsc.bcm.edu 37 8 67579170 67579170 + Silent SNP C C A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VCPIP1-662 NM_025054 exon1 c.G24T p.P8P CGGAGGCGGCGGC . 27 19 2 0 . 0 0 0 0 0 ESRP1 54845 hgsc.bcm.edu;bcgsc.ca 37 8 95686611 95686611 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ESRP1-94 NM_001122827 exon12 c.1528delA p.K510fs TGTCATAAAAAAA . 263 174 267 3 . 0 0 0 0 0 ZFPM2 23414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 106814998 106814998 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZFPM2-139 NM_012082 exon8 c.G2688A p.P896P GTTTCCGAATCCA . 55 10 46 0 . 0 0 0 0 0 SYBU 55638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110587864 110587864 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SYBU-227 NM_001099752 exon8 c.G1263A p.T421T TTCCCCCGTGACC . 109 34 129 0 . 32 26 6 0 0 PHF20L1 51105 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 133823330 133823330 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PHF20L1-92 NM_016018 exon9 c.887delA p.E296fs GTGCTGAAAAAAA . 71 43 82 0 . 0 0 0 0 0 ZFAT 57623 broad.mit.edu 37 8 135649757 135649757 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ZFAT-90 NM_001174157 exon3 c.G395A p.R132Q TGCTTCCGCAGCT . 174 5 160 0 . 0 0 0 0 0 FAM135B 51059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 139278014 139278014 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM135B-31 NM_015912 exon4 c.C229T p.R77W CATTCCGGTATAA . 135 9 104 0 . 0 0 0 0 0 GPR20 2843 hgsc.bcm.edu 37 8 142367290 142367290 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GPR20-91 NM_005293 exon2 c.C734T p.T245M AGCACCGTGAGCA . 43 29 6 0 . 0 0 0 0 0 MROH6 642475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144653155 144653155 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001100878 exon4 c.C612T p.A204A GAGCTCGGCTGCT . 97 9 69 0 . 1 0 1 0 0 EPPK1 83481 bcgsc.ca 37 8 144940290 144940290 + Missense_Mutation SNP C C G rs201976887 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EPPK1-25 NM_031308 exon1 c.G7132C p.D2378H TGGGGTCGGCCAG . 284 35 63 0 . 3 3 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998514 144998514 + Silent SNP C C T rs75586449 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLEC-141 NM_201380 exon31 c.G5994A p.A1998A GTTCTCCGCCTCC . 4 4 0 0 C|0.961;T|0.039 11 4 7 0 0 SPATC1 375686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145094825 145094825 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SPATC1-91 NM_001134374 exon2 c.C227T p.P76L TGCCCCCGTCCCC . 107 26 70 0 . 0 0 0 0 0 OPLAH 26873 hgsc.bcm.edu;broad.mit.edu 37 8 145106724 145106724 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . OPLAH-68 NM_017570 exon27 c.3626delG p.G1209fs GGCTCGCCCCCTG . 36 10 5 0 . 0 0 0 0 0 CPSF1 29894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145620718 145620718 + Missense_Mutation SNP G G T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CPSF1-91 NM_013291 exon27 c.C3028A p.P1010T GCCATGGGGCATC . 222 75 108 0 . 78 66 12 0 0 KIFC2 90990 hgsc.bcm.edu 37 8 145697835 145697835 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIFC2-92 NM_145754 exon15 c.T1699C p.W567R ACCCACTGGGACG . 135 82 7 0 . 70 21 49 0 0 RECQL4 9401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145736909 145736909 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RECQL4-1083 NM_004260 exon22 c.G3532A p.G1178R CCTGCCCGTACAC . 182 40 86 0 . 89 64 24 0 1 CBWD1 55871 ucsc.edu;bcgsc.ca 37 9 163985 163985 + Silent SNP A A G rs2482169 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CBWD1-469 NM_001145356 exon5 c.T483C p.Y161Y ATCAAGATAAATA . 186 25 167 3 . 1 0 1 0 0 C9orf66 157983 hgsc.bcm.edu 37 9 215057 215057 + Missense_Mutation SNP T T C rs481905 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C9orf66-514 NM_152569 exon1 c.A340G p.N114D GCAGGTTGCGGCC . 5 5 0 0 T|0.413;C|0.587 0 0 0 0 0 KANK1 23189 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 712006 712006 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KANK1-517 NM_001256876 exon7 c.G1240A p.V414M ATCGTCGTGTACC . 321 24 205 0 . 1 1 0 0 0 KANK1 23189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 738458 738458 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KANK1-517 NM_001256876 exon12 c.C3507T p.S1169S TTACAGCGTGTCC . 274 58 206 0 . 3 2 1 0 0 VLDLR 7436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 2643347 2643347 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VLDLR-516 NM_003383 exon5 c.C636T p.C212C GGTATGCGACGAT . 293 75 165 0 . 4 4 0 0 0 ERMP1 79956 hgsc.bcm.edu 37 9 5832719 5832719 + Missense_Mutation SNP G G C rs13302671 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ERMP1-69 NM_024896 exon1 c.C309G p.H103Q CCCGCGGTGTCCA . 8 6 0 0 G|0.981;C|0.019 0 0 0 0 0 BNC2 54796 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 16419579 16419579 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BNC2-92 NM_017637 exon7 c.C2708T p.S903L TGCGACGAGTCCA . 70 67 67 1 . 0 0 0 0 0 ANKRD18B 441459 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 9 33572324 33572324 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001244752 exon16 c.G2999A p.R1000H TGCTGCGTTGGGC . 266 51 238 0 . 0 0 0 0 0 KIF24 347240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 34306372 34306372 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIF24-22 NM_194313 exon3 c.C691T p.R231C GGGGGCGTTTTCG . 93 85 114 1 . 0 0 0 0 0 TLN1 7094 hgsc.bcm.edu;broad.mit.edu 37 9 35715145 35715145 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TLN1-609 NM_006289 exon21 c.C2665T p.R889W GCAGCCGCTGCTG . 91 5 25 0 . 4 4 0 0 0 TMEM8B 51754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35853771 35853771 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMEM8B-91 NM_001042590 exon13 c.C1353T p.N451N CATCAACGAGCAG . 43 37 13 0 . 16 0 16 0 0 GRHPR 9380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 37428531 37428531 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . GRHPR-90 NM_012203 exon5 c.C455T p.T152M GACTCACGCAGAG . 123 115 30 0 . 75 0 75 0 0 TJP2 9414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 71861604 71861604 + Splice_Site SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TJP2-115 NM_001170414 exon19 c.2498-2A>G . TTCTATAGCTACA . 94 94 80 0 . 0 0 0 0 0 TMEM2 23670 broad.mit.edu;bcgsc.ca 37 9 74305086 74305086 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMEM2-92 NM_013390 exon22 c.G3773A p.R1258H GTCAAGCGGAATG . 244 11 183 0 . 0 0 0 0 0 VPS13A 23230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 79933230 79933230 + Missense_Mutation SNP C C T rs144009026 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . VPS13A-161 NM_001018038 exon41 c.C5036T p.T1679M AAGAAACGGCTTC . 123 113 104 0 C|1.000;T|0.000 0 0 0 0 0 WNK2 65268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 96021245 96021245 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WNK2-765 NM_006648 exon11 c.G2415A p.T805T CATCACGCCCCTG . 288 37 83 0 . 3 3 0 0 0 WNK2 65268 broad.mit.edu 37 9 96021293 96021293 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . WNK2-765 NM_006648 exon11 c.G2463A p.P821P CCTGCCGACCGCG . 248 6 22 0 . 0 0 0 0 0 CCDC180 0 bcgsc.ca 37 9 100070351 100070351 + Silent SNP G G A rs12683119 byfrequency;alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_020893 exon2 c.G138A p.S46S GATGTCGTCAGTG . 386 11 212 0 G|0.813;C|0.187 0 0 0 0 0 NCBP1 4686 hgsc.bcm.edu;bcgsc.ca 37 9 100409836 100409838 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NCBP1-90 NM_002486 exon7 c.674_676del p.225_226del ATCCACAAGAAGA . 71 69 81 2 . 0 0 0 0 0 INVS 27130 broad.mit.edu 37 9 102888723 102888723 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . INVS-92 NM_183245 exon3 c.C165T p.C55C GTATTGCGTGTTG . 236 6 162 0 . 0 0 0 0 0 EPB41L4B 54566 bcgsc.ca 37 9 111956668 111956668 + Silent SNP G G A rs41278379 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EPB41L4B-92 NM_019114 exon21 c.C2055T p.D685D GAGGTCGTCTTCA . 308 15 203 0 G|0.994;A|0.006 0 0 0 0 0 EPB41L4B 54566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 112042162 112042162 + Missense_Mutation SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EPB41L4B-92 NM_019114 exon2 c.T346C p.Y116H AGTGGTACACAAT . 134 32 94 0 . 2 1 1 0 0 C9orf43 257169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 116176059 116176059 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . C9orf43-90 NM_152786 exon3 c.G172A p.V58M CTCACCGTGGTAG . 164 155 119 0 . 0 0 0 0 0 RGS3 5998 hgsc.bcm.edu;broad.mit.edu 37 9 116269824 116269824 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RGS3-227 NM_144488 exon14 c.G1343A p.R448H CCAAGCGCGGGGG . 170 25 8 0 . 2 2 0 0 0 DFNB31 25861 hgsc.bcm.edu 37 9 117166245 117166245 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DFNB31-95 NM_015404 exon10 c.G2349A p.V783V GGTGGACACCGAC . 79 4 31 0 . 0 0 0 0 0 TNC 3371 bcgsc.ca 37 9 117848659 117848659 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TNC-517 NM_002160 exon3 c.G1351A p.E451K TGCCCTCGACACA . 236 45 156 3 . 0 0 0 0 0 RABGAP1 23637 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125861009 125861009 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RABGAP1-500 NM_012197 exon23 c.C2749T p.R917C ATGTGCCGTCGGG . 97 30 70 0 . 21 18 3 0 0 CRB2 286204 hgsc.bcm.edu 37 9 126135831 126135831 + Silent SNP T T C rs7848449 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CRB2-91 NM_173689 exon10 c.T3021C p.A1007A GCTGGCTGAGAAC . 7 6 0 0 T|0.886;C|0.114 0 0 0 0 0 FAM129B 64855 hgsc.bcm.edu 37 9 130269566 130269571 + In_Frame_Del DEL CCGCCC CCGCCC - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 CCGCCC CCGCCC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM129B-68 NM_022833 exon14 c.1794_1799del p.598_600del GGGCTGCCGCCCC . 123 101 2 0 . 0 0 0 0 0 FAM129B 64855 bcgsc.ca 37 9 130289573 130289573 + Missense_Mutation SNP G G C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FAM129B-68 NM_022833 exon3 c.C215G p.S72W TTCCCCGAGAAGA . 147 5 83 0 . 7 7 0 0 0 DNM1 1759 bcgsc.ca 37 9 130984508 130984508 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . DNM1-228 . . . . ACTGCCGGGGCTG . 382 25 245 3 . 2 2 0 0 0 FIBCD1 84929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 133799257 133799257 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FIBCD1-90 NM_001145106 exon5 c.C723T p.P241P GTCTCGGGGCCGG . 331 308 34 0 . 0 0 0 0 0 SNAPC4 6621 broad.mit.edu 37 9 139277995 139277997 + In_Frame_Del DEL GCT GCT - rs34222232 alternate_allele TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SNAPC4-90 NM_003086 exon15 c.1624_1626del p.542_542del CTCCTCGCTGCTG . 130 8 7 0 . 0 0 0 0 0 SDCCAG3 10807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139299638 139299638 + Missense_Mutation SNP G G A rs200655256 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SDCCAG3-90 NM_001039707 exon7 c.C910T p.R304W ACTTCCGCTCAAG . 118 112 80 0 G|0.999;A|0.000 25 0 25 0 0 NOTCH1 4851 hgsc.bcm.edu 37 9 139400219 139400219 + Missense_Mutation SNP G G A rs61751542 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NOTCH1-5459 NM_017617 exon25 c.C4129T p.P1377S TGAAGGGGCCCAG . 10 9 2 0 G|0.990;A|0.010 2 0 2 0 0 LCN10 414332 broad.mit.edu 37 9 139634004 139634004 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LCN10-67 NM_001001712 exon6 c.G576A p.A192A ACGGGACGCTGTG . 314 7 139 1 . 0 0 0 0 0 RABL6 55684 hgsc.bcm.edu;broad.mit.edu 37 9 139734633 139734635 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001173988 exon14 c.1961_1963del p.654_655del CTAAGGAGAAGAA . 254 20 134 0 . 0 0 0 0 0 MAMDC4 158056 hgsc.bcm.edu;bcgsc.ca 37 9 139748110 139748110 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAMDC4-156 NM_206920 exon4 c.G442A p.A148T TACCACGCGGCCT . 136 131 7 0 . 3 0 3 0 0 PNPLA7 375775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140373513 140373513 + Missense_Mutation SNP T T C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PNPLA7-91 NM_001098537 exon24 c.A2758G p.K920E CCAGCTTGGGCAG . 308 49 47 0 . 0 0 0 0 0 ASMTL 8623 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 1522202 1522202 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ASMTL-62 NM_004192 exon13 c.1826delG p.G609fs AGGACACCCCCCA . 292 125 176 0 . 0 0 0 0 0 DHRSX 207063 bcgsc.ca 37 X 2184933 2184933 + Silent SNP G G A rs200644172 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_145177 exon5 c.C444T p.F148F CAGGCCGAAATGT . 1480 658 993 5 G|0.999;A|0.001 34 20 14 0 0 ARSD 414 broad.mit.edu 37 X 2825437 2825437 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ARSD-130 NM_001669 exon10 c.C1657T p.Q553X GGGTCTGCCGATG . 224 9 119 1 . 1 1 0 0 0 TBL1X 6907 ucsc.edu;bcgsc.ca 37 X 9673126 9673126 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TBL1X-131 NM_001139466 exon13 c.G1208A p.R403H GTGACCGCCCAGT . 426 388 306 4 . 2 0 2 0 0 USP9X 8239 hgsc.bcm.edu;broad.mit.edu 37 X 40982957 40982957 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . USP9X-563 NM_001039591 exon2 c.76delC p.P26fs TCTCAGCCCCCCC . 242 13 184 0 . 0 0 0 0 0 CCDC120 90060 hgsc.bcm.edu 37 X 48921959 48921959 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC120-131 NM_001163321 exon6 c.C488T p.A163V CGGCGGCCGCCCG . 21 18 2 0 . 0 0 0 0 0 CCDC120 90060 hgsc.bcm.edu 37 X 48925015 48925015 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CCDC120-131 NM_001163321 exon10 c.C1365T p.A455A CCGGGCCGCCCGG . 21 21 0 0 . 3 0 3 0 0 AKAP4 8852 bcgsc.ca 37 X 49955729 49955729 + Silent SNP C C T rs78668179 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AKAP4-540 NM_003886 exon6 c.G2439A p.E813E CCCCTTCTCTGCT . 117 6 81 0 C|0.961;T|0.039 0 0 0 0 0 UBQLN2 29978 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 56591874 56591874 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . UBQLN2-131 NM_013444 exon1 c.1568delC p.A523fs CTGCAGCCCCCCC . 57 48 21 0 . 0 0 0 0 0 STARD8 9754 broad.mit.edu 37 X 67941902 67941902 + Missense_Mutation SNP C C T rs61735034 byfrequency TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . STARD8-196 NM_001142503 exon11 c.C2473T p.R825C AGCAAACGCAGCC . 169 7 87 2 C|0.998;T|0.002 0 0 0 0 0 TEX11 56159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69902635 69902635 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TEX11-178 NM_001003811 exon15 c.C1090T p.R364C TAAAACGTTCATG . 111 46 88 0 . 0 0 0 0 0 SLC7A3 84889 broad.mit.edu;bcgsc.ca 37 X 70148709 70148709 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . SLC7A3-132 NM_032803 exon3 c.G514A p.V172M GCAACACGAGGCC . 131 6 74 0 . 0 0 0 0 0 KIAA2022 340533 broad.mit.edu;bcgsc.ca 37 X 73960665 73960665 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIAA2022-183 NM_001008537 exon3 c.C3727T p.R1243C CCCCACGGCCAAT . 239 11 176 0 . 0 0 0 0 0 KIAA2022 340533 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 73961524 73961524 + Silent SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KIAA2022-183 NM_001008537 exon3 c.C2868T p.T956T GAGTTGGGTATCT . 137 13 92 0 . 0 0 0 0 0 PRPS1 5631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 106890920 106890920 + Silent SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRPS1-289 NM_002764 exon6 c.C789T p.N263N CAACAACGCATGC . 216 103 167 0 . 30 14 16 0 0 HTR2C 3358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114141204 114141204 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HTR2C-133 NM_001256761 exon6 c.C508T p.R170C GGTGTTCGTGAAC . 251 90 186 0 . 0 0 0 0 0 AGTR2 186 hgsc.bcm.edu;bcgsc.ca 37 X 115303928 115303928 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AGTR2-565 NM_000686 exon3 c.395delT p.I132fs CAAGCATTTTTTT . 72 59 52 0 . 0 0 0 0 0 NKAP 79576 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 119059239 119059239 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . NKAP-132 NM_024528 exon9 c.1192delC p.L398fs TGGCCAGAATCTT . 87 82 60 0 . 0 0 0 0 0 ATP1B4 23439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 119512613 119512613 + Silent SNP C C T rs148650396 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATP1B4-131 NM_001142447 exon7 c.C897T p.Y299Y TTACTACGGCAAA . 95 11 59 0 C|1.000;T|0.000 0 0 0 0 0 BCORL1 63035 hgsc.bcm.edu;bcgsc.ca 37 X 129149050 129149050 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BCORL1-294 NM_021946 exon3 c.2302delA p.K768fs TGTGGCAAAAAGG . 149 133 105 1 . 0 0 0 0 0 MAP7D3 79649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135323411 135323411 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAP7D3-110 NM_024597 exon5 c.G443A p.R148H AAAGTACGATAAA . 105 41 72 0 . 0 0 0 0 0 MAGEA12 4111 broad.mit.edu;bcgsc.ca 37 X 151900357 151900357 + Silent SNP A A G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAGEA12-131 NM_005367 exon2 c.T444C p.P148P GATCACAGGAAAG . 512 14 353 0 . 0 0 0 0 0 MAGEA12 4111 broad.mit.edu;bcgsc.ca 37 X 151900373 151900373 + Missense_Mutation SNP A A C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MAGEA12-131 NM_005367 exon2 c.T428G p.F143C TCCTGGAAATTTC . 481 17 351 0 . 0 0 0 0 0 ATP2B3 492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152807870 152807870 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . ATP2B3-109 NM_001001344 exon4 c.C754T p.R252C CACGTGCGCAAGT . 208 84 38 0 . 11 7 4 0 0 PLXNB3 5365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 153042767 153042767 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PLXNB3-130 NM_001163257 exon31 c.C5101T p.R1701W AGCCTGCGGGAGC . 198 85 15 0 . 97 54 43 0 0 PDZD4 57595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153073942 153073942 + Missense_Mutation SNP G G A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PDZD4-193 NM_032512 exon2 c.C169T p.R57W CCCCCCGGAGGCG . 218 112 53 0 . 6 4 2 0 0 FLNA 2316 bcgsc.ca 37 X 153595114 153595114 + Missense_Mutation SNP C C T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FLNA-599 NM_001456 exon6 c.G973A p.G325R GGTGTCCGGCCGG . 126 117 43 2 . 4 0 4 0 0 PRKAA2 5563 broad.mit.edu;bcgsc.ca 37 1 57173340 57173341 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRKAA2-885 NM_006252 exon9 c.1613_1614insT p.D538fs CCATGGATTTTTT . 88 9 124 0 . 0 0 0 0 0 HIP1R 9026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 123339931 123339932 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . HIP1R-91 NM_003959 exon11 c.972_973insC p.G324fs CACAGGGCCCCCC . 171 60 40 0 . 0 0 0 0 0 EFS 10278 broad.mit.edu 37 14 23826637 23826638 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . EFS-153 NM_005864 exon6 c.1484_1485insG p.A495fs GAGGCTGCCAGCC . 389 8 48 0 . 0 0 0 0 0 TMC5 79838 broad.mit.edu 37 16 19452014 19452015 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TMC5-91 NM_001105249 exon3 c.654_655insT p.P218fs TCCACCCTTTTTT . 233 9 177 0 . 0 0 0 0 0 KRTAP4-3 85290 broad.mit.edu 37 17 39324139 39324140 + In_Frame_Ins INS - - GCAGCAGGTGGTCAG novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . KRTAP4-3-22 NM_033187 exon1 c.286_287insCTGACCACCTGCTGC p.R96delinsLTTCCR TGGTCCTGCAGCA . 285 10 196 0 . 0 0 0 0 0 FLT3LG 2323 hgsc.bcm.edu 37 19 49982165 49982166 + Splice_Site INS - - C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FLT3LG-115 NM_001204502 exon6 c.343-1->C . CTCCCAGCCCCCC . 98 43 25 0 . 0 0 0 0 0 CACNG6 59285 broad.mit.edu 37 19 54496174 54496175 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CACNG6-92 NM_031897 exon1 c.43_44insT p.R15fs CGGCGGCGGGGGG . 11 5 5 0 . 0 0 0 0 0 FILIP1L 11259 hgsc.bcm.edu;bcgsc.ca 37 3 99567122 99567123 + Frame_Shift_Ins INS - - TA novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . FILIP1L-45 NM_001042459 exon5 c.3398_3399insTA p.N1133fs GGTCAGTTATATA . 165 143 260 2 . 0 0 0 0 0 GCSAM 257144 broad.mit.edu;bcgsc.ca 37 3 111845872 111845873 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . . NM_001190259 exon4 c.158_159insA p.I53fs ATGAGTATTTTTT . 24 7 30 0 . 0 0 0 0 0 AMTN 401138 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 71394929 71394930 + Splice_Site INS - - A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . AMTN-153 NM_212557 exon7 c.357+2->A . AATTGGTAAAAAA . 194 63 180 0 . 0 0 0 0 0 LARP7 51574 hgsc.bcm.edu 37 4 113578482 113578483 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . LARP7-93 NM_001267039 exon15 c.1769_1770insA p.X590delinsX ATGATTGAAAAAA . 215 48 160 0 . 0 0 0 0 0 RAD50 10111 hgsc.bcm.edu 37 5 131931451 131931452 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . RAD50-229 NM_005732 exon13 c.2156_2157insA p.L719fs CAGAGCTAAAAAA . 67 16 41 0 . 0 0 0 0 0 TBP 6908 broad.mit.edu 37 6 170871013 170871014 + In_Frame_Ins INS - - CAG rs201732168 TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . TBP-91 NM_003194 exon3 c.189_190insCAG p.Q63delinsQQ ACAACAACAGCAG . 81 48 47 0 -|0.138;CAG|0.862 0 0 0 0 0 BOP1 23246 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 145512978 145512979 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . BOP1-90 NM_015201 exon2 c.107_108insC p.L36fs CAGAGGAGGGGGG . 118 31 94 0 . 0 0 0 0 0 PRRC2B 84726 broad.mit.edu 37 9 134351684 134351685 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . PRRC2B-24 NM_013318 exon15 c.4168_4169insG p.R1390fs GAGCGGCGGGAAG . 159 16 13 0 . 0 0 0 0 0 CAMSAP1 157922 hgsc.bcm.edu;broad.mit.edu 37 9 138719314 138719315 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CAMSAP1-92 NM_015447 exon8 c.1162_1163insC p.V388fs GCTGCACGGGGGG . 178 19 38 0 . 0 0 0 0 0 CAPN6 827 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 110496401 110496402 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CAPN6-195 NM_014289 exon4 c.341_342insA p.T114fs TTTTCTGTTTTTT . 54 49 63 0 . 0 0 0 0 0 MECP2 4204 broad.mit.edu 37 X 153295915 153295916 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . MECP2-226 NM_001110792 exon3 c.1400_1401insG p.E467fs TCTCCCTCCCCTC . 152 11 76 0 . 0 0 0 0 0 CLTB 1212 hgsc.bcm.edu;mdanderson.org 37 5 175843341 175843342 + Missense_Mutation DNP GA GA CG novel TCGA-OR-A5J5-01A-11D-A29I-10 TCGA-OR-A5J5-10A-01D-A29L-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 6471eb9c-c821-4738-b250-d8472bc987ef eff987db-5671-487e-ac2c-4472ae5fdb2e . CLTB-90 NM_001834 exon1 c.T23C p.F8S GACGAGAAGAAGC . 192 0 10 0 . 0 0 0 0 0