Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TTLL10	254173	bcgsc.ca	37	1	1120431	1120431	+	Missense_Mutation	SNP	G	G	A	rs1320571	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TTLL10-153	NM_001130045	exon13	c.G1343A	p.S448N	ACATCAGTGACAC	.	268	11	291	0	G|0.839;A|0.161	0	0	0	0	0
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1273448	1273448	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DVL1-658	NM_004421	exon14	c.G1548A	p.Q516Q	CGGGTACTGGTAG	.	31	28	21	0	.	52	0	52	0	0
ATAD3A	55210	hgsc.bcm.edu	37	1	1447693	1447693	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ATAD3A-91	NM_001170535	exon1	c.C45T	p.G15G	TGAAGGCGCGGGG	.	16	15	4	0	.	1	0	1	0	0
CDK11A	728642	ucsc.edu;bcgsc.ca	37	1	1638897	1638897	+	Missense_Mutation	SNP	A	A	G	rs201956539		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CDK11A-14	NM_024011	exon11	c.T1196C	p.L399S	ATGGGCAACAGGG	.	71	58	67	5	A|0.998;G|0.002	40	0	40	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	7	7	1	0	G|0.647;A|0.353	0	0	0	0	0
IL22RA1	58985	bcgsc.ca	37	1	24465113	24465113	+	Silent	SNP	C	C	T	rs10903022	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IL22RA1-91	NM_021258	exon2	c.G135A	p.P45P	GCCCTCCGGCCCG	.	97	5	116	1	C|0.607;N|0.000	0	0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216299	111216299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNA3-95	NM_002232	exon1	c.C1133A	p.S378X	TGGCGCGACAGCT	.	113	3	177	2	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	145075687	145075687	+	Missense_Mutation	SNP	C	C	G	rs78401481	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PDE4DIP-663	NM_022359	exon1	c.G176C	p.S59T	GCCCAGCTCCCGG	.	115	20	16	0	C|0.989;G|0.011	0	0	0	0	0
NES	10763	bcgsc.ca	37	1	156640503	156640503	+	Silent	SNP	C	C	T	rs3828043	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	NES-520	NM_006617	exon4	c.G3477A	p.G1159G	GCTCTTCCCAGGC	.	68	4	91	0	C|0.787;T|0.213	3	3	0	0	0
RNASEL	6041	bcgsc.ca	37	1	182554557	182554557	+	Missense_Mutation	SNP	C	C	T	rs486907	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	RNASEL-336	NM_021133	exon2	c.G1385A	p.R462Q	ACATTTCGGGCAA	.	212	8	241	3	C|0.737;T|0.263	2	2	0	0	0
CAPN2	824	bcgsc.ca	37	1	223933079	223933079	+	Silent	SNP	C	C	T	rs17598	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CAPN2-523	NM_001748	exon4	c.C498T	p.L166L	GCTGCTCTTTGTG	.	114	5	168	2	C|0.742;T|0.258	40	40	0	0	0
PSEN2	5664	bcgsc.ca	37	1	227077809	227077809	+	Silent	SNP	C	C	T	rs75733498	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PSEN2-658	NM_012486	exon9	c.C861T	p.P287P	TGAGCCCATATTC	.	90	5	115	0	C|0.993;T|0.007	22	22	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	6	5	0	0	C|0.643;T|0.357	0	0	0	0	0
FMN2	56776	mdanderson.org	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	FMN2-145	NM_020066	exon5	c.C3111T	p.P1037P	ACTTCCCGGAGCG	.	15	7	13	0	.	0	0	0	0	0
ANKRD30A	91074	ucsc.edu	37	10	37438605	37438605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ANKRD30A-161	NM_052997	exon10	c.A1402G	p.K468E	GCCTTCAAGGTAT	.	121	15	139	2	.	0	0	0	0	0
FAM21C	253725	bcgsc.ca	37	10	46224381	46224381	+	Silent	SNP	C	C	T	rs17157971	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	FAM21C-91	NM_015262	exon3	c.C198T	p.D66D	AGTGGACGGACTA	.	152	8	203	2	C|0.945;T|0.055	1	1	0	0	0
SPOCK2	9806	hgsc.bcm.edu	37	10	73848075	73848075	+	Silent	SNP	C	C	T	rs2306324		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	5	5	0	0	C|0.870;T|0.130	3	3	0	0	0
PGAM1	5223	broad.mit.edu	37	10	99186071	99186071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PGAM1-226	NM_002629	exon1	c.G7T	p.A3S	ATGGCCGCCTACA	.	218	6	99	0	.	285	283	1	0	1
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001134363	exon1	c.G90A	p.R30R	TGCCCGGGCGTCC	.	13	11	0	0	G|0.808;A|0.192	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112540915	112540915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001134363	exon2	c.C548T	p.S183F	GACCCTCCATGAA	.	74	61	98	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	91	6	19	0	.	0	0	0	0	0
DUSP8	1850	hgsc.bcm.edu	37	11	1578741	1578741	+	Silent	SNP	C	C	T	rs182736278		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DUSP8-226	NM_004420	exon7	c.G885A	p.E295E	CTCGTACTCCAGC	.	7	5	0	0	C|0.990;T|0.010	1	0	1	0	0
PTPRJ	5795	broad.mit.edu	37	11	48149412	48149412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PTPRJ-541	NM_001098503	exon7	c.G1174A	p.E392K	GATAACGAGTCGT	.	99	4	121	0	.	1	1	0	0	0
TPCN2	219931	bcgsc.ca	37	11	68837957	68837957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TPCN2-90	NM_139075	exon9	c.G889T	p.V297L	TTCACTGTGATAG	.	16	3	35	0	.	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100095508	100095508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CNTN5-366	NM_001243270	exon15	c.G1969T	p.D657Y	ACAGCAGACAGTG	.	131	119	145	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	378	39	288	15	G|0.998;A|0.002	1589	607	982	0	0
TESPA1	9840	bcgsc.ca	37	12	55368245	55368245	+	Silent	SNP	G	G	A	rs4758993	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001098815	exon2	c.C102T	p.A34A	GGCGGCGGCAGCC	.	168	6	114	0	G|0.625;A|0.375	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81777846	81777846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPFIA2-231	NM_001220476	exon8	c.A940G	p.K314E	CTGTTTTAATGAG	.	282	83	170	0	.	0	0	0	0	0
ABCB9	23457	broad.mit.edu	37	12	123414623	123414623	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ABCB9-90	NM_019625	exon12	c.G2136T	p.V712V	GTCCAGCACCACA	.	219	9	57	1	.	15	13	2	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124239085	124239085	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ATP6V0A2-92	NM_012463	exon18	c.2293+1G>A	.	ACGCACGTAAGTT	.	96	4	83	0	.	0	0	0	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	9	9	0	0	C|0.925;A|0.075	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	67	6	23	0	.	9	9	0	0	0
RTL1	388015	broad.mit.edu	37	14	101349017	101349017	+	Silent	SNP	A	A	G	rs6575805	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	RTL1-46	NM_001134888	exon1	c.T2109C	p.F703F	GAGCGCAAACGGC	.	216	5	145	0	A|0.311;G|0.689	0	0	0	0	0
SPATA5L1	79029	hgsc.bcm.edu	37	15	45695445	45695445	+	Missense_Mutation	SNP	C	C	G	rs143453038		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPATA5L1-94	NM_024063	exon1	c.C818G	p.S273C	AGGGTTCCCGGCC	.	29	27	2	0	C|0.982;G|0.018	1	0	1	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ADAMTS7-226	NM_014272	exon24	c.G5023T	p.A1675S	AGGGGGCGCCGTG	.	50	24	1	0	.	7	7	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	8	8	0	0	C|0.615;G|0.385	0	0	0	0	0
ZFP90	146198	broad.mit.edu	37	16	68597636	68597636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ZFP90-91	NM_133458	exon4	c.G946T	p.G316W	CTCTGTGGGAAAG	.	159	5	83	0	.	10	10	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	MTSS1L-68	NM_138383	exon15	c.G1623T	p.G541G	GGGCAGCCCAGCA	.	79	8	23	2	.	8	8	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	1	0	.	0	0	0	0	0
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10608472	10608472	+	Missense_Mutation	SNP	G	G	A	rs74947284		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_020233	exon2	c.G229A	p.D77N	ATCATCGATGGAT	.	127	113	166	0	G|0.999;A|0.001	6	1	5	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296422	39296422	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_030976	exon1	c.T318C	p.R106R	GCTGGGACGGCAG	.	195	38	65	3	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305775	39305775	+	Missense_Mutation	SNP	T	T	C	rs141265645		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KRTAP4-5-90	NM_033188	exon1	c.A245G	p.Q82R	GTGGTCTGGCAGC	.	42	35	5	0	.	0	0	0	0	0
HELZ	9931	bcgsc.ca	37	17	65190106	65190106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HELZ-92	NM_014877	exon9	c.C534A	p.S178R	TTCCTCGCTGCTT	.	82	4	114	0	.	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;bcgsc.ca	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PRKAR1A-1141	NM_212472	exon11	c.1110delC	p.I370fs	AAACATCCAGCAG	.	120	94	154	2	.	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	9	9	0	0	C|0.780;G|0.220	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	932572	932572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ARID3A-90	NM_005224	exon3	c.C523G	p.R175G	TTCCCCCGAAAGG	.	105	35	12	0	.	1	1	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	18	11	0	0	C|0.766;T|0.234	4	2	2	0	0
PCSK4	54760	hgsc.bcm.edu	37	19	1482150	1482150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PCSK4-90	NM_017573	exon15	c.C1876T	p.R626W	AGAACCGCGGGGG	.	20	7	0	0	.	4	0	4	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	4	4	0	0	A|0.541;G|0.459	1	0	1	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	6	6	0	0	G|0.892;A|0.108	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	11	6	1	0	C|0.752;G|0.248	4	2	2	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8551112	8551112	+	Silent	SNP	G	G	T	rs12977861	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HNRNPM-68	NM_005968	exon14	c.G1800T	p.L600L	GGCCCTGGGCGCT	.	20	10	0	0	G|0.960;T|0.040	75	37	38	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	16	6	0	0	C|0.671;A|0.329	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	6	6	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	7	0	0	A|0.065;C|0.935	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	22	14	2	0	T|0.000;G|0.967	42	12	29	0	1
BLOC1S3	388552	hgsc.bcm.edu	37	19	45682698	45682698	+	Silent	SNP	C	C	A	rs182286598		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	BLOC1S3-90	NM_212550	exon2	c.C144A	p.R48R	GACGCGCGGCCGC	.	33	20	1	0	C|0.995;A|0.005	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	14	11	0	0	C|0.804;T|0.196	22	9	13	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	7	2	0	C|0.254;G|0.746	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	8	5	0	0	A|0.808;G|0.192	3	1	2	0	0
TP53I3	9540	broad.mit.edu	37	2	24307079	24307079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TP53I3-226	NM_147184	exon2	c.A118C	p.N40H	CCCGGTTCAGGGC	.	50	5	41	0	.	5	5	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26537397	26537397	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR113-94	NM_001145168	exon7	c.T1017C	p.L339L	GTATGGAAGTCGA	.	317	276	380	2	.	0	0	0	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	276	36	187	1	G|1.000;|0.000	0	0	0	0	0
IMMT	10989	ucsc.edu;bcgsc.ca	37	2	86400824	86400824	+	Missense_Mutation	SNP	G	G	A	rs1050301	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IMMT-91	NM_006839	exon4	c.C370T	p.P124S	AGGCAGGCTGTTT	.	37	4	34	0	T|0.226;G|0.216;C|0.446;N|0.001;A|0.111	51	51	0	0	0
LIMS1	3987	ucsc.edu	37	2	109293130	109293130	+	Silent	SNP	A	A	G	rs2438733	bycluster;byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LIMS1-522	NM_001193485	exon7	c.A900G	p.A300A	CCTGGCATATTGT	.	50	10	263	4	A|0.500;G|0.500	4	0	4	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	7	7	0	0	A|0.029;G|0.971	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827798	241827798	+	Missense_Mutation	SNP	T	T	C	rs11899555	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C2orf54-90	NM_001085437	exon4	c.A1162G	p.I388V	AGCCGATGCGCGG	.	12	11	2	0	T|0.796;C|0.204	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827805	241827805	+	Silent	SNP	C	C	A	rs75895045		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C2orf54-90	NM_001085437	exon4	c.G1155T	p.P385P	GCGCGGCGGGGGG	.	10	9	2	0	C|0.942;A|0.058	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	.	.	.	.	CTGCAGCCTTCCT	.	86	6	18	0	.	5	5	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	.	.	.	.	TTCTCCTGCTTAG	.	75	7	51	0	.	0	0	0	0	0
PROCR	10544	broad.mit.edu	37	20	33762727	33762727	+	Missense_Mutation	SNP	G	G	T	rs200377875		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PROCR-226	NM_006404	exon2	c.G293T	p.R98L	TCGTGCGCCTGGT	.	45	5	23	0	.	5	5	0	0	0
IFNAR2	3455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	34634996	34634996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IFNAR2-90	NM_000874	exon9	c.G971A	p.R324H	ACAAGCGTGCATC	.	27	13	38	0	.	2	1	1	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	11	5	0	0	G|0.803;A|0.197	0	0	0	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	21088807	21088807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PI4KA-454	NM_058004	exon33	c.C3776T	p.T1259M	TCCACCGTCATGT	.	191	10	269	0	.	10	10	0	0	0
TAB1	10454	broad.mit.edu	37	22	39826114	39826114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TAB1-522	NM_006116	exon11	c.C1402A	p.H468N	CCCGCCCACTCGC	.	70	3	32	0	.	8	8	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C22orf26-90	NM_018280	exon1	c.C83T	p.P28L	GGGTTGGGGGGGG	.	7	5	0	0	A|0.248;C|0.000;G|0.752	0	0	0	0	0
PLCD1	5333	broad.mit.edu	37	3	38050645	38050645	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLCD1-226	NM_001130964	exon11	c.C1674T	p.N558N	AAAGCCGTTTCCT	.	97	3	83	0	.	0	0	0	0	0
SETD2	29072	broad.mit.edu	37	3	47163592	47163592	+	Nonsense_Mutation	SNP	G	G	C	rs201639149		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SETD2-1273	NM_014159	exon3	c.C2534G	p.S845X	AATTTTGAGTGAT	.	65	3	56	0	G|0.999;C|0.000	2	2	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPX1-68	.	.	.	.	GACTGGGCCGCCG	.	44	20	5	0	.	0	0	0	0	0
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52255624	52255624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TLR9-587	NM_017442	exon2	c.C2708A	p.A903E	CGGAGTGCCCAGC	.	141	11	72	0	.	1	1	0	0	0
GPR171	29909	broad.mit.edu	37	3	150916947	150916947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR171-90	NM_013308	exon3	c.G227A	p.G76D	GCCACACCCAAGT	.	192	4	179	0	.	0	0	0	0	0
ETV5	2119	broad.mit.edu	37	3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ETV5-706	NM_004454	exon7	c.A536C	p.H179P	AGCGAATGGGGGG	.	44	9	46	1	.	7	7	0	0	0
LEPREL1	55214	bcgsc.ca	37	3	189713205	189713205	+	Silent	SNP	T	T	C	rs9821880	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LEPREL1-155	NM_018192	exon2	c.A507G	p.E169E	AGCTGCTTCCACT	.	57	4	78	0	C|0.302;N|0.001	21	21	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	40	8	9	0	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537078	88537078	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DSPP-90	NM_014208	exon5	c.T3264C	p.S1088S	TAGCAGTGACAGC	.	286	12	392	6	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537249	88537249	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DSPP-90	NM_014208	exon5	c.T3435C	p.S1145S	CAGCAGTGACAGC	.	615	30	739	15	.	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	FRG1-90	NM_004477	exon6	c.G506A	p.S169N	CAAAAAGTAAAAC	.	822	34	782	17	G|0.500;A|0.500	72	72	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13870993	13870993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DNAH5-182	NM_001369	exon24	c.C3717A	p.F1239L	CTTATTGAATTCT	.	177	77	117	0	.	0	0	0	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	0	0	0	0	0
PPWD1	23398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64878975	64878975	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPWD1-91	NM_015342	exon8	c.T1461A	p.P487P	AGGACCTAAACGA	.	178	92	140	0	.	16	9	7	0	0
CMYA5	202333	broad.mit.edu	37	5	79041149	79041151	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CMYA5-77	NM_153610	exon4	c.10839_10841del	p.3613_3614del	GGAAGTGAAGAAG	.	672	7	466	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	4	4	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255099	140255099	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_018903	exon1	c.G42C	p.L14L	GCGTCTGCTGCTC	.	101	37	61	0	.	0	0	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	106	38	2	0	G|0.500;A|0.500	33	32	1	0	0
HK3	3101	broad.mit.edu	37	5	176315851	176315851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HK3-294	NM_002115	exon9	c.T929C	p.I310T	CCTCCGATCATCT	.	98	4	60	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	7	7	0	0	A|0.006;G|0.994	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	9	9	0	0	T|0.441;C|0.559	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920393	51920393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PKHD1-603	NM_170724	exon19	c.T1828A	p.Y610N	GTGTATACTGATC	.	108	93	121	1	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	9	9	0	0	T|0.089;G|0.911	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	14	14	0	0	G|0.456;C|0.544	1	0	1	0	0
GBX1	2636	hgsc.bcm.edu	37	7	150864240	150864240	+	Silent	SNP	G	G	C	rs13241978	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GBX1-68	NM_001098834	exon1	c.C396G	p.A132A	TCGGGCGGCAGTG	.	18	11	1	0	G|0.699;C|0.301	0	0	0	0	0
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	89	4	58	0	.	0	0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73850257	73850257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNB2-158	NM_004770	exon3	c.G2667T	p.L889F	TCACTTGTTTGCC	.	205	5	236	0	.	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	5	5	0	0	C|0.434;G|0.566	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu	37	8	132052342	132052342	+	Missense_Mutation	SNP	C	C	T	rs2228949	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ADCY8-157	NM_001115	exon1	c.G238A	p.A80T	GCGGCGCGTGGTG	.	14	13	0	0	C|0.979;T|0.021	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	16	14	0	0	C|0.707;T|0.293	0	0	0	0	0
DAB2IP	153090	hgsc.bcm.edu	37	9	124535156	124535156	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DAB2IP-91	NM_032552	exon12	c.C2265T	p.A755A	GGTGGCCGGGTGG	.	12	12	0	0	.	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127230891	127230891	+	Missense_Mutation	SNP	G	G	A	rs10760365	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001161808	exon14	c.G2248A	p.V750M	AGGAAGGTGGTAG	.	67	4	89	1	G|0.465;A|0.535	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127231774	127231774	+	Missense_Mutation	SNP	C	C	G	rs1570580	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001161808	exon16	c.C2506G	p.R836G	CGTGCCCGCATGT	.	225	4	204	1	C|0.409;G|0.591	0	0	0	0	0
COL5A1	1289	broad.mit.edu	37	9	137727048	137727048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	COL5A1-524	NM_000093	exon65	c.G5368T	p.A1790S	GGCTGTGCTGTGA	.	87	5	61	1	.	0	0	0	0	0
GPR174	84636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78426661	78426661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR174-130	NM_032553	exon1	c.C157T	p.R53X	ACAAAACGAGCTG	.	104	86	91	1	.	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994407	140994407	+	Missense_Mutation	SNP	C	C	G	rs62611965	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	MAGEC1-133	NM_005462	exon4	c.C1217G	p.S406C	CCCAGTCTCCTCT	.	93	5	114	0	C|0.933;G|0.067	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994419	140994419	+	Missense_Mutation	SNP	T	T	C	rs138268726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	MAGEC1-133	NM_005462	exon4	c.T1229C	p.I410T	TCCAGATTCCTAT	.	94	5	128	0	T|0.932;C|0.068	0	0	0	0	0
CALHM3	119395	hgsc.bcm.edu	37	10	105233174	105233175	+	In_Frame_Ins	INS	-	-	GGGGGCTCAGGCACTGCG	rs143800079		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CALHM3-67	NM_001129742	exon3	c.831_832insCGCAGTGCCTGAGCCCCC	p.P277delinsPAVPEPP	GCCTTCTGGGGGC	.	45	21	28	0	-|0.870;GGGGGCTCAGGCACTGCG|0.130	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305773	39305774	+	Missense_Mutation	DNP	TC	TC	GG	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.QT82HP	GGTGGTCTGGCAG	.	40	17	7	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	4	0	0	0	G|0.721;T|0.279	0	0	0	0	0