Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 PTCHD2 57540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 11561526 11561526 + Silent SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . PTCHD2-209 NM_020780 exon2 c.G477A p.L159L GCAGCTGCATCTC . 22 8 38 0 . 0 0 0 0 0 VPS13D 55187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12309384 12309384 + Silent SNP T T G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . VPS13D-95 NM_015378 exon6 c.T552G p.A184A AAATGCTGTGAAT . 127 48 65 0 . 0 0 0 0 0 PHC2 1912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 33820015 33820015 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . PHC2-227 NM_198040 exon8 c.G1542A p.P514P TGGGGACGGCTGG . 123 55 81 0 . 1 1 0 0 0 LCE1B 353132 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152785074 152785097 + In_Frame_Del DEL GCTGTGGCTCCAGCTCTGGGGGAA GCTGTGGCTCCAGCTCTGGGGGAA - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 GCTGTGGCTCCAGCTCTGGGGGAA GCTGTGGCTCCAGCTCTGGGGGAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LCE1B-68 NM_178349 exon1 c.152_175del p.51_59del GAGGCTGCTGTGG . 105 22 105 0 . 0 0 0 0 0 LCE1A 353131 hgsc.bcm.edu 37 1 152800122 152800122 + Silent SNP C C T rs148143373 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LCE1A-70 NM_178348 exon1 c.C174T p.G58G TGGGGGCGGCTGC . 73 8 73 0 C|1.000;T|0.000 0 0 0 0 0 LCE1A 353131 bcgsc.ca 37 1 152800131 152800131 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LCE1A-70 NM_178348 exon1 c.C183T p.S61S CTGCAGCTCTGGG . 73 11 78 1 . 0 0 0 0 0 SLC9C2 284525 broad.mit.edu;bcgsc.ca 37 1 173499091 173499091 + Missense_Mutation SNP C C A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . . NM_178527 exon18 c.G2266T p.A756S GTTTGGCATCTTC . 75 6 61 0 . 0 0 0 0 0 DNAH14 127602 broad.mit.edu 37 1 225569241 225569241 + Missense_Mutation SNP T T G rs950210 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . DNAH14-23 NM_001373 exon79 c.T12731G p.F4244C AAATATTTAACTC . 159 5 109 0 T|0.433;G|0.566 1 1 0 0 0 OPN4 94233 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 88419681 88419681 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . OPN4-69 NM_001030015 exon7 c.G863A p.G288D GCAAGGGCAATGG . 174 12 163 0 . 0 0 0 0 0 DNAJC4 3338 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 64001585 64001585 + Missense_Mutation SNP G G T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . DNAJC4-226 NM_005528 exon7 c.G655T p.G219W CGGCTAGGGCAGC . 54 7 60 0 . 151 125 26 0 0 KLRB1 3820 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 9760409 9760409 + Missense_Mutation SNP C C G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . KLRB1-90 NM_002258 exon1 c.G27C p.E9D GTTTAACTCAGCA . 312 127 214 1 . 0 0 0 0 0 TAS2R20 259295 bcgsc.ca 37 12 11150319 11150319 + Silent SNP T T C rs11054143 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TAS2R20-90 NM_176889 exon1 c.A156G p.A52A GGAGACTGCCAGA . 143 6 143 0 T|0.678;C|0.322 1 1 0 0 0 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Silent SNP G G A rs199599214 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TUBA1C-90 NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG . 323 29 352 33 G|0.998;A|0.002 405 130 275 0 0 KRT8 3856 broad.mit.edu 37 12 53298675 53298675 + Missense_Mutation SNP A A C novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . KRT8-92 NM_001256282 exon2 c.T175G p.S59A TGCGGGAACCGGG . 65 5 118 1 . 0 0 0 0 0 EP400 57634 bcgsc.ca 37 12 132547096 132547096 + Silent SNP G G A rs74479394 TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . EP400-520 NM_015409 exon47 c.G8184A p.Q2728Q ACAACAGCAGCAG . 282 12 168 3 . 17 4 13 0 0 SALL2 6297 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 21991730 21991730 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . SALL2-92 NM_005407 exon2 c.G2132A p.R711Q TGCATCCGGACAT . 114 53 90 1 . 0 0 0 0 0 ABHD4 63874 hgsc.bcm.edu 37 14 23078809 23078809 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ABHD4-90 NM_022060 exon6 c.G932A p.R311Q ATGTCCGAGACAT . 80 4 40 0 . 0 0 0 0 0 PLCB2 5330 broad.mit.edu;bcgsc.ca 37 15 40587141 40587141 + Silent SNP C C T rs201613773 TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . PLCB2-275 NM_004573 exon18 c.G1902A p.T634T ACCCATCGTCTGG . 92 41 95 2 C|1.000;T|0.000 1 1 0 0 0 C15orf27 123591 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 76467904 76467904 + Nonsense_Mutation DEL C C - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . C15orf27-90 NM_152335 exon8 c.657delC p.Y219X AGCCTACGTCCTG . 192 76 170 0 . 0 0 0 0 0 KLHDC4 54758 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 87742934 87742934 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . KLHDC4-182 NM_017566 exon10 c.G1384A p.D462N GCAGGTCGCTGAG . 201 53 127 1 . 65 49 16 0 0 SCARF1 8578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 1543262 1543262 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . SCARF1-91 NM_145350 exon6 c.G1083A p.G361G ACAGGACCCCTGA . 195 64 133 0 . 1 1 0 0 0 NOL11 25926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65734087 65734087 + Missense_Mutation SNP A A C novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . NOL11-90 NM_015462 exon13 c.A1528C p.S510R TTCTTGAGGTAAG . 58 26 52 0 . 1 0 1 0 0 CD7 924 broad.mit.edu 37 17 80274162 80274162 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . CD7-90 NM_006137 exon3 c.521delC p.P174fs GCTGCTGGCGGGT . 23 7 50 0 . 0 0 0 0 0 LAMA3 3909 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 21461949 21461949 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LAMA3-100 NM_001127717 exon40 c.G5162A p.G1721D AGGAGGGCTACTA . 189 82 142 0 . 0 0 0 0 0 WDR7 23335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 54348602 54348602 + Missense_Mutation SNP T T C novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . WDR7-93 NM_052834 exon4 c.T325C p.C109R TTAGCTTGCACAC . 196 49 156 0 . 1 1 0 0 0 ZNF516 9658 ucsc.edu 37 18 74154244 74154244 + Missense_Mutation SNP G G T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ZNF516-69 NM_014643 exon3 c.C767A p.A256D CTGAAGGCCTGGC . 85 10 79 6 . 2 2 0 0 0 THOP1 7064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2790453 2790453 + Silent SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . THOP1-92 NM_003249 exon2 c.G51A p.P17P ATCTCCGTGCTCT . 93 50 100 0 . 1 0 1 0 0 ANKRD24 170961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 4210319 4210319 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ANKRD24-68 NM_133475 exon13 c.C1009T p.L337L CGCCTCCTGCAGA . 411 171 426 0 . 1 1 0 0 0 LYPD3 27076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43968541 43968541 + Missense_Mutation SNP C C A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LYPD3-91 NM_014400 exon2 c.G147T p.M49I TGTCTTCATCTTG . 207 29 99 0 . 0 0 0 0 0 LYPD3 27076 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43968550 43968550 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LYPD3-91 NM_014400 exon2 c.G138A p.P46P CTTGTTCGGGGAG . 219 29 112 1 . 0 0 0 0 0 PVRL2 5819 broad.mit.edu 37 19 45381598 45381600 + In_Frame_Del DEL GAG GAG - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . PVRL2-90 NM_002856 exon6 c.1161_1163del p.387_388del GAGGGTGAGGAGG . 200 10 49 0 . 0 0 0 0 0 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25505395 25505395 + Silent SNP T T A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . DNMT3A-1924 NM_175630 exon4 c.A363T p.A121A CTCAGCTGCACCC . 61 27 71 0 . 2 1 1 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179501161 179501161 + Missense_Mutation SNP T T C novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TTN-636 NM_001267550 exon225 c.A41293G p.K13765E TTTCTTTGTTTCC . 105 49 112 0 . 0 0 0 0 0 SMOX 54498 hgsc.bcm.edu 37 20 4162847 4162847 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . SMOX-153 NM_175839 exon5 c.C721T p.R241W TTCATGCGGGTTG . 65 4 63 0 . 0 0 0 0 0 GPCPD1 56261 broad.mit.edu 37 20 5556163 5556163 + Silent SNP T T A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . GPCPD1-90 NM_019593 exon10 c.A897T p.P299P GTATCCTGGTAAT . 112 6 83 0 . 5 5 0 0 0 CST1 1469 broad.mit.edu 37 20 23728528 23728528 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . CST1-91 NM_001898 exon3 c.G351A p.L117L AGAGCACAACTGT . 190 6 113 1 . 0 0 0 0 0 RBL1 5933 hgsc.bcm.edu;bcgsc.ca 37 20 35696518 35696518 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . RBL1-419 NM_183404 exon3 c.G362A p.R121H TCTATACGTTCAC . 51 4 51 0 . 0 0 0 0 0 ZBP1 81030 broad.mit.edu 37 20 56185352 56185352 + Missense_Mutation SNP C C A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ZBP1-228 NM_030776 exon7 c.G946T p.G316W CTTCCCCCTCAGG . 133 4 160 2 . 0 0 0 0 0 TNFRSF6B 8771 bcgsc.ca 37 20 62328267 62328267 + Silent SNP C C T rs2257440 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TNFRSF6B-651 NM_003823 exon1 c.C147T p.C49C GGTGTGCGCCCAG . 47 4 69 0 C|0.779;T|0.221 1 1 0 0 0 TMEM40 55287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 12779634 12779634 + Splice_Site SNP C C G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TMEM40-90 NM_018306 exon8 c.424+1G>C . TATTTACCACTTG . 147 60 127 0 . 0 0 0 0 0 TRAK1 22906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42265106 42265106 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TRAK1-91 NM_001042646 exon16 c.C2739T p.G913G TAGTGGCATCCGG . 161 72 188 0 . 9 4 5 0 0 CACNA1D 776 broad.mit.edu 37 3 53529193 53529195 + Frame_Shift_Del DEL GAT GAT - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . CACNA1D-100 NM_001128840 wholegene TTCGTGGATGATG . 463 7 394 0 . 0 0 0 0 0 ZIC4 84107 bcgsc.ca 37 3 147108756 147108756 + Silent SNP C C G rs17509456 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ZIC4-91 NM_001168378 exon4 c.G1116C p.S372S CGCCGCCGAGGAG . 10 3 54 0 C|0.975;G|0.025 0 0 0 0 0 LXN 56925 broad.mit.edu 37 3 158388792 158388792 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . LXN-90 NM_020169 exon2 c.G146A p.G49E TTATGTCCTCTTC . 356 4 376 0 . 10 10 0 0 0 MUC4 4585 bcgsc.ca 37 3 195509383 195509383 + Missense_Mutation SNP G G T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . MUC4-90 NM_018406 exon2 c.C9068A p.T3023N AGAGGGGTGGCGT . 155 11 489 5 . 0 0 0 0 0 SCFD2 152579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 54231383 54231383 + Missense_Mutation SNP T T G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . SCFD2-93 NM_152540 exon1 c.A726C p.L242F CTGACTTAAGGAA . 159 76 144 0 . 5 3 2 0 0 FRAS1 80144 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 79399070 79399070 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . FRAS1-68 NM_025074 exon55 c.G7953A p.M2651I CAGCATGCCAGCT . 267 113 241 2 . 0 0 0 0 0 TACR3 6870 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 104640739 104640739 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TACR3-525 NM_001059 exon1 c.94delG p.A32fs TGGCCGCCCCGGC . 40 14 88 0 . 0 0 0 0 0 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 114277261 114277261 + Missense_Mutation SNP C C G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . ANK2-583 NM_001148 exon38 c.C7487G p.T2496R CCAAAACAGAACT . 75 28 70 0 . 0 0 0 0 0 TRAM1L1 133022 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 118006510 118006519 + Frame_Shift_Del DEL GAACGGGGGG GAACGGGGGG - novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 GAACGGGGGG GAACGGGGGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . TRAM1L1-90 NM_152402 exon1 c.31_40del p.11_14del GGCTGAGAACGGG . 109 29 108 0 . 0 0 0 0 0 KLHL3 26249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 136973018 136973018 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . KLHL3-90 NM_017415 exon11 c.C1286T p.T429M CGCCGCGTGTTCA . 178 82 142 0 . 0 0 0 0 0 GABRA1 2554 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 161300197 161300197 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . GABRA1-93 NM_001127644 exon5 c.C330T p.V110V GACAGTCCTCCGG . 72 8 90 0 . 0 0 0 0 0 HIST1H3B 8358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26031919 26031919 + Missense_Mutation SNP C C G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . HIST1H3B-92 NM_003537 exon1 c.G370C p.D124H GGATGTCTTTGGG . 128 51 111 0 . 0 0 0 0 0 MICA 100507436 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31378525 31378525 + Silent SNP C C T rs17206561 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . . NM_001177519 exon2 c.C276T p.N92N AGGGAACGGAAAG . 232 108 196 1 C|0.765;T|0.235 25 16 9 0 0 PRIM2 5558 bcgsc.ca 37 6 57393112 57393112 + RNA SNP T T C rs11964288 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . PRIM2-227 . . . . TTAAAGTCATTCC . 33 9 31 0 T|0.985;C|0.015 0 0 0 0 0 DDO 8528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 110714258 110714258 + Missense_Mutation SNP T T G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . DDO-155 NM_003649 exon5 c.A830C p.E277A CTATTTTCTGCAT . 100 50 98 0 . 13 8 5 0 0 DNAJB9 4189 bcgsc.ca 37 7 108212353 108212353 + Silent SNP G G A rs1043615 byfrequency TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . DNAJB9-226 NM_012328 exon2 c.G183A p.P61P GAGCCCGGATGCT . 127 5 139 1 G|0.543;A|0.457 11 11 0 0 0 RBM28 55131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127954955 127954955 + Missense_Mutation SNP G G A novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . RBM28-92 NM_018077 exon17 c.C1907T p.P636L TGCTCTGGGGGCA . 178 63 153 0 . 15 10 5 0 0 KCNH2 3757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150647026 150647026 + Missense_Mutation SNP C C G novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . KCNH2-94 NM_172056 exon9 c.G2628C p.R876S GCGGATCCTGAAG . 107 34 152 0 . 23 9 14 0 0 GPR124 25960 broad.mit.edu 37 8 37697097 37697097 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . GPR124-157 NM_032777 exon16 c.C2468T p.A823V TCTTTGCGGGGGG . 160 6 109 0 . 0 0 0 0 0 MEGF9 1955 bcgsc.ca 37 9 123421744 123421744 + Silent SNP G G T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . . NM_001080497 exon2 c.C711A p.T237T TTTGCAGGTTTCA . 94 4 103 0 . 1 1 0 0 0 NTMT1 28989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 132395087 132395087 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . . NM_014064 exon2 c.C105T p.G35G GTATGGCCACATC . 175 71 178 0 . 99 65 34 0 0 SNAPC4 6621 broad.mit.edu;bcgsc.ca 37 9 139272547 139272547 + Silent SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . SNAPC4-90 NM_003086 exon21 c.G3732A p.Q1244Q CCCAGGCTGGCGC . 19 5 36 0 . 9 6 3 0 0 BEX5 340542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101409174 101409174 + Missense_Mutation SNP C C T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . BEX5-86 NM_001012978 exon3 c.G64A p.A22T CTAAAGCGGGGGC . 31 27 52 0 . 7 7 0 0 0 F8 2157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 154157135 154157135 + Missense_Mutation SNP T T C novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . F8-182 NM_000132 exon14 c.A4930G p.T1644A CCCAGGTGACTTC . 55 5 66 0 . 0 0 0 0 0 CD7 924 broad.mit.edu 37 17 80274159 80274160 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J1-01A-11D-A29I-10 TCGA-OR-A5J1-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 352062e7-9b06-41cd-880c-38fe268c9bf3 1d288ab9-ab2d-4483-af84-f5d0f5837cda . CD7-90 NM_006137 exon3 c.524_525insA p.A175fs GAGGCTGCTGGCG . 26 8 57 0 . 0 0 0 0 0